Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psuG and psuT are separated by 93 nucleotides psuT and yeiL are separated by 70 nucleotides yeiL and rihB are separated by 129 nucleotides
MCAODC_14505: psuG - pseudouridine-5'-phosphate glycosidase, at 2,854,425 to 2,855,363
psuG
MCAODC_14510: psuT - Putative pseudouridine transporter, at 2,855,457 to 2,856,707
psuT
MCAODC_14515: yeiL - Regulatory protein YeiL, at 2,856,778 to 2,857,476
yeiL
MCAODC_14520: rihB - ribosylpyrimidine nucleosidase, at 2,857,606 to 2,858,547
rihB
Position (kb)
2855
2856
2857 Strain fitness (log2 ratio)
-1
0
1
2 at 2854.804 kb on + strand, within psuG at 2855.166 kb on - strand, within psuG at 2855.166 kb on - strand, within psuG at 2855.192 kb on - strand, within psuG at 2855.216 kb on + strand, within psuG at 2855.457 kb on - strand at 2855.464 kb on + strand at 2855.464 kb on + strand at 2855.503 kb on + strand at 2855.525 kb on + strand at 2855.598 kb on + strand, within psuT at 2855.599 kb on - strand, within psuT at 2855.623 kb on + strand, within psuT at 2855.623 kb on + strand, within psuT at 2855.624 kb on - strand, within psuT at 2855.624 kb on - strand, within psuT at 2855.624 kb on - strand, within psuT at 2855.638 kb on + strand, within psuT at 2855.661 kb on + strand, within psuT at 2855.758 kb on + strand, within psuT at 2855.803 kb on - strand, within psuT at 2855.805 kb on + strand, within psuT at 2855.939 kb on + strand, within psuT at 2855.979 kb on - strand, within psuT at 2856.031 kb on - strand, within psuT at 2856.046 kb on + strand, within psuT at 2856.057 kb on + strand, within psuT at 2856.058 kb on - strand, within psuT at 2856.111 kb on - strand, within psuT at 2856.117 kb on - strand, within psuT at 2856.273 kb on - strand, within psuT at 2856.293 kb on + strand, within psuT at 2856.560 kb on + strand, within psuT at 2857.108 kb on + strand, within yeiL at 2857.275 kb on + strand, within yeiL at 2857.275 kb on + strand, within yeiL at 2857.508 kb on + strand at 2857.513 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 2,854,804 + psuG MCAODC_14505 0.40 -0.3 2,855,166 - psuG MCAODC_14505 0.79 -1.4 2,855,166 - psuG MCAODC_14505 0.79 -0.6 2,855,192 - psuG MCAODC_14505 0.82 +1.3 2,855,216 + psuG MCAODC_14505 0.84 +1.5 2,855,457 - +1.0 2,855,464 + -0.7 2,855,464 + +0.1 2,855,503 + -1.3 2,855,525 + -0.1 2,855,598 + psuT MCAODC_14510 0.11 -0.3 2,855,599 - psuT MCAODC_14510 0.11 +1.0 2,855,623 + psuT MCAODC_14510 0.13 -0.2 2,855,623 + psuT MCAODC_14510 0.13 +0.4 2,855,624 - psuT MCAODC_14510 0.13 -0.9 2,855,624 - psuT MCAODC_14510 0.13 +0.5 2,855,624 - psuT MCAODC_14510 0.13 -0.9 2,855,638 + psuT MCAODC_14510 0.14 -1.7 2,855,661 + psuT MCAODC_14510 0.16 -1.0 2,855,758 + psuT MCAODC_14510 0.24 -0.3 2,855,803 - psuT MCAODC_14510 0.28 -1.5 2,855,805 + psuT MCAODC_14510 0.28 -0.4 2,855,939 + psuT MCAODC_14510 0.39 -1.7 2,855,979 - psuT MCAODC_14510 0.42 -1.2 2,856,031 - psuT MCAODC_14510 0.46 -0.7 2,856,046 + psuT MCAODC_14510 0.47 -1.0 2,856,057 + psuT MCAODC_14510 0.48 -0.0 2,856,058 - psuT MCAODC_14510 0.48 +0.0 2,856,111 - psuT MCAODC_14510 0.52 +1.0 2,856,117 - psuT MCAODC_14510 0.53 -1.3 2,856,273 - psuT MCAODC_14510 0.65 -0.6 2,856,293 + psuT MCAODC_14510 0.67 -0.0 2,856,560 + psuT MCAODC_14510 0.88 +0.2 2,857,108 + yeiL MCAODC_14515 0.47 +1.9 2,857,275 + yeiL MCAODC_14515 0.71 -0.5 2,857,275 + yeiL MCAODC_14515 0.71 +0.2 2,857,508 + +0.3 2,857,513 + +0.2
Or see this region's nucleotide sequence