Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napA and napG are separated by 6 nucleotides napG and napH overlap by 14 nucleotides napH and napH overlap by 4 nucleotides
MCAODC_14305: napA - nitrate reductase catalytic subunit NapA, at 2,811,414 to 2,813,900
napA
MCAODC_14310: napG - ferredoxin-type protein NapG, at 2,813,907 to 2,814,602
napG
MCAODC_14315: napH - quinol dehydrogenase ferredoxin subunit NapH, at 2,814,589 to 2,815,452
napH
MCAODC_14320: napH - quinol dehydrogenase ferredoxin subunit NapH, at 2,815,449 to 2,815,898
napH
Position (kb)
2813
2814
2815 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2812.999 kb on + strand, within napA at 2813.016 kb on + strand, within napA at 2813.036 kb on + strand, within napA at 2813.059 kb on + strand, within napA at 2813.060 kb on - strand, within napA at 2813.060 kb on - strand, within napA at 2813.098 kb on + strand, within napA at 2813.134 kb on + strand, within napA at 2813.134 kb on + strand, within napA at 2813.188 kb on - strand, within napA at 2813.199 kb on + strand, within napA at 2813.200 kb on - strand, within napA at 2813.310 kb on + strand, within napA at 2813.311 kb on - strand, within napA at 2813.361 kb on + strand, within napA at 2813.433 kb on - strand, within napA at 2813.464 kb on - strand, within napA at 2813.466 kb on - strand, within napA at 2813.490 kb on - strand, within napA at 2813.490 kb on - strand, within napA at 2813.600 kb on + strand, within napA at 2813.655 kb on - strand at 2813.784 kb on + strand at 2813.784 kb on + strand at 2813.785 kb on - strand at 2813.785 kb on - strand at 2813.785 kb on - strand at 2813.785 kb on - strand at 2813.785 kb on - strand at 2813.898 kb on + strand at 2813.898 kb on + strand at 2813.899 kb on - strand at 2813.899 kb on - strand at 2813.906 kb on + strand at 2813.906 kb on + strand at 2813.906 kb on + strand at 2813.906 kb on + strand at 2813.906 kb on + strand at 2813.907 kb on - strand at 2813.907 kb on - strand at 2814.134 kb on - strand, within napG at 2814.178 kb on - strand, within napG at 2814.302 kb on - strand, within napG at 2814.464 kb on + strand, within napG at 2814.465 kb on - strand, within napG at 2814.550 kb on + strand at 2814.550 kb on + strand at 2814.551 kb on - strand at 2814.600 kb on + strand at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.748 kb on + strand, within napH at 2814.749 kb on - strand, within napH at 2814.749 kb on - strand, within napH at 2814.751 kb on - strand, within napH at 2814.764 kb on + strand, within napH at 2814.764 kb on + strand, within napH at 2814.862 kb on - strand, within napH at 2814.875 kb on - strand, within napH at 2814.875 kb on - strand, within napH at 2814.896 kb on + strand, within napH at 2814.939 kb on - strand, within napH at 2815.041 kb on - strand, within napH at 2815.154 kb on + strand, within napH at 2815.207 kb on + strand, within napH at 2815.276 kb on - strand, within napH at 2815.313 kb on + strand, within napH at 2815.313 kb on + strand, within napH at 2815.313 kb on + strand, within napH at 2815.314 kb on - strand, within napH at 2815.314 kb on - strand, within napH at 2815.409 kb on + strand at 2815.409 kb on + strand at 2815.413 kb on + strand at 2815.414 kb on - strand at 2815.414 kb on - strand at 2815.423 kb on - strand at 2815.423 kb on - strand at 2815.423 kb on - strand at 2815.423 kb on - strand at 2815.564 kb on + strand, within napH
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 2,812,999 + napA MCAODC_14305 0.64 -0.8 2,813,016 + napA MCAODC_14305 0.64 -0.5 2,813,036 + napA MCAODC_14305 0.65 -1.2 2,813,059 + napA MCAODC_14305 0.66 -0.1 2,813,060 - napA MCAODC_14305 0.66 -1.7 2,813,060 - napA MCAODC_14305 0.66 +0.4 2,813,098 + napA MCAODC_14305 0.68 -0.7 2,813,134 + napA MCAODC_14305 0.69 +1.3 2,813,134 + napA MCAODC_14305 0.69 +0.6 2,813,188 - napA MCAODC_14305 0.71 -0.5 2,813,199 + napA MCAODC_14305 0.72 +2.0 2,813,200 - napA MCAODC_14305 0.72 +0.2 2,813,310 + napA MCAODC_14305 0.76 +1.5 2,813,311 - napA MCAODC_14305 0.76 -1.8 2,813,361 + napA MCAODC_14305 0.78 -0.7 2,813,433 - napA MCAODC_14305 0.81 +0.3 2,813,464 - napA MCAODC_14305 0.82 -1.3 2,813,466 - napA MCAODC_14305 0.83 +0.1 2,813,490 - napA MCAODC_14305 0.83 +0.6 2,813,490 - napA MCAODC_14305 0.83 +0.2 2,813,600 + napA MCAODC_14305 0.88 -1.1 2,813,655 - -2.0 2,813,784 + +0.2 2,813,784 + -0.7 2,813,785 - -0.9 2,813,785 - +0.1 2,813,785 - -1.3 2,813,785 - -0.5 2,813,785 - -2.9 2,813,898 + -0.9 2,813,898 + -0.2 2,813,899 - +1.1 2,813,899 - +0.5 2,813,906 + +0.8 2,813,906 + -0.8 2,813,906 + +0.5 2,813,906 + -0.5 2,813,906 + -0.4 2,813,907 - -0.3 2,813,907 - +0.5 2,814,134 - napG MCAODC_14310 0.33 -0.3 2,814,178 - napG MCAODC_14310 0.39 -0.9 2,814,302 - napG MCAODC_14310 0.57 -0.8 2,814,464 + napG MCAODC_14310 0.80 -0.8 2,814,465 - napG MCAODC_14310 0.80 +1.3 2,814,550 + -0.8 2,814,550 + -0.6 2,814,551 - +1.0 2,814,600 + +0.6 2,814,748 + napH MCAODC_14315 0.18 -1.5 2,814,748 + napH MCAODC_14315 0.18 -0.4 2,814,748 + napH MCAODC_14315 0.18 -0.6 2,814,748 + napH MCAODC_14315 0.18 +0.1 2,814,748 + napH MCAODC_14315 0.18 -0.7 2,814,748 + napH MCAODC_14315 0.18 +0.7 2,814,748 + napH MCAODC_14315 0.18 +1.6 2,814,748 + napH MCAODC_14315 0.18 -1.2 2,814,748 + napH MCAODC_14315 0.18 -0.4 2,814,749 - napH MCAODC_14315 0.19 +1.5 2,814,749 - napH MCAODC_14315 0.19 -2.3 2,814,751 - napH MCAODC_14315 0.19 -1.2 2,814,764 + napH MCAODC_14315 0.20 +0.2 2,814,764 + napH MCAODC_14315 0.20 +0.2 2,814,862 - napH MCAODC_14315 0.32 -0.9 2,814,875 - napH MCAODC_14315 0.33 +1.3 2,814,875 - napH MCAODC_14315 0.33 -0.4 2,814,896 + napH MCAODC_14315 0.36 +1.2 2,814,939 - napH MCAODC_14315 0.41 -2.0 2,815,041 - napH MCAODC_14315 0.52 -0.3 2,815,154 + napH MCAODC_14315 0.65 -1.0 2,815,207 + napH MCAODC_14315 0.72 -0.3 2,815,276 - napH MCAODC_14315 0.80 +0.7 2,815,313 + napH MCAODC_14315 0.84 +0.3 2,815,313 + napH MCAODC_14315 0.84 -1.9 2,815,313 + napH MCAODC_14315 0.84 -1.7 2,815,314 - napH MCAODC_14315 0.84 +0.2 2,815,314 - napH MCAODC_14315 0.84 +1.2 2,815,409 + -0.1 2,815,409 + -1.0 2,815,413 + +0.8 2,815,414 - +0.4 2,815,414 - +2.5 2,815,423 - -0.5 2,815,423 - -0.3 2,815,423 - -1.1 2,815,423 - -0.7 2,815,564 + napH MCAODC_14320 0.26 +0.1
Or see this region's nucleotide sequence