Strain Fitness in Escherichia coli ECRC101 around MCAODC_11270

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcsrA and Ser_trna are separated by 315 nucleotidesSer_trna and Arg_trna are separated by 3 nucleotidesArg_trna and Arg_trna are separated by 64 nucleotidesArg_trna and Arg_trna are separated by 62 nucleotidesArg_trna and Arg_trna are separated by 102 nucleotidesArg_trna and yqaB are separated by 280 nucleotidesyqaB and yqaA overlap by 4 nucleotides MCAODC_11245: csrA - carbon storage regulator CsrA, at 2,241,884 to 2,242,069 csrA MCAODC_11250: Ser_trna - tRNA-Ser(gct), at 2,242,385 to 2,242,477 _trna MCAODC_11255: Arg_trna - tRNA-Arg(acg), at 2,242,481 to 2,242,557 _trna MCAODC_11260: Arg_trna - tRNA-Arg(acg), at 2,242,622 to 2,242,698 _trna MCAODC_11265: Arg_trna - tRNA-Arg(acg), at 2,242,761 to 2,242,837 _trna MCAODC_11270: Arg_trna - tRNA-Arg(acg), at 2,242,940 to 2,243,016 _trna MCAODC_11275: yqaB - fructose-1-phosphate/6-phosphogluconate phosphatase, at 2,243,297 to 2,243,863 yqaB MCAODC_11280: yqaA - Inner membrane protein YqaA, at 2,243,860 to 2,244,288 yqaA Position (kb) 2242 2243 2244Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2242.064 kb on + strandat 2242.068 kb on - strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.128 kb on - strandat 2242.130 kb on - strandat 2242.163 kb on - strandat 2242.163 kb on - strandat 2242.163 kb on - strandat 2242.184 kb on - strandat 2242.219 kb on - strandat 2242.249 kb on - strandat 2242.563 kb on + strandat 2242.570 kb on + strandat 2242.578 kb on + strandat 2242.604 kb on + strandat 2242.711 kb on + strandat 2242.711 kb on + strandat 2242.719 kb on + strandat 2242.719 kb on + strandat 2242.719 kb on + strandat 2242.838 kb on + strandat 2242.867 kb on + strandat 2242.897 kb on + strandat 2242.912 kb on + strandat 2243.017 kb on + strandat 2243.098 kb on + strandat 2243.188 kb on + strandat 2243.196 kb on + strandat 2243.196 kb on + strandat 2243.197 kb on - strandat 2243.255 kb on + strandat 2243.256 kb on - strandat 2243.265 kb on + strandat 2243.265 kb on + strandat 2243.301 kb on - strandat 2243.385 kb on + strand, within yqaBat 2243.389 kb on - strand, within yqaBat 2243.434 kb on + strand, within yqaBat 2243.435 kb on - strand, within yqaBat 2243.456 kb on - strand, within yqaBat 2243.470 kb on + strand, within yqaBat 2243.471 kb on - strand, within yqaBat 2243.532 kb on + strand, within yqaBat 2243.533 kb on - strand, within yqaBat 2243.533 kb on - strand, within yqaBat 2243.539 kb on + strand, within yqaBat 2243.539 kb on + strand, within yqaBat 2243.539 kb on + strand, within yqaBat 2243.540 kb on - strand, within yqaBat 2243.552 kb on - strand, within yqaBat 2243.616 kb on + strand, within yqaBat 2243.679 kb on - strand, within yqaBat 2243.720 kb on - strand, within yqaBat 2243.758 kb on + strand, within yqaBat 2243.919 kb on - strand, within yqaAat 2243.922 kb on - strand, within yqaAat 2244.013 kb on - strand, within yqaAat 2244.013 kb on - strand, within yqaA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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2,242,064 + -1.2
2,242,068 - +0.4
2,242,127 + +0.2
2,242,127 + -1.4
2,242,127 + +0.3
2,242,127 + -0.5
2,242,127 + +0.3
2,242,128 - +0.1
2,242,130 - +0.6
2,242,163 - -2.0
2,242,163 - -1.8
2,242,163 - -0.2
2,242,184 - -1.3
2,242,219 - +0.8
2,242,249 - -0.2
2,242,563 + +0.2
2,242,570 + +0.6
2,242,578 + +0.8
2,242,604 + -0.0
2,242,711 + -0.4
2,242,711 + +0.1
2,242,719 + -1.8
2,242,719 + +0.2
2,242,719 + -0.5
2,242,838 + +0.2
2,242,867 + -0.8
2,242,897 + -2.0
2,242,912 + +1.1
2,243,017 + +0.1
2,243,098 + +0.0
2,243,188 + -0.7
2,243,196 + +0.8
2,243,196 + -1.4
2,243,197 - +0.2
2,243,255 + +0.8
2,243,256 - +0.5
2,243,265 + +0.3
2,243,265 + +0.4
2,243,301 - -0.1
2,243,385 + yqaB MCAODC_11275 0.16 +1.7
2,243,389 - yqaB MCAODC_11275 0.16 +1.5
2,243,434 + yqaB MCAODC_11275 0.24 +0.6
2,243,435 - yqaB MCAODC_11275 0.24 -1.0
2,243,456 - yqaB MCAODC_11275 0.28 -1.6
2,243,470 + yqaB MCAODC_11275 0.31 -0.6
2,243,471 - yqaB MCAODC_11275 0.31 +1.7
2,243,532 + yqaB MCAODC_11275 0.41 -1.3
2,243,533 - yqaB MCAODC_11275 0.42 +1.5
2,243,533 - yqaB MCAODC_11275 0.42 +1.6
2,243,539 + yqaB MCAODC_11275 0.43 +0.4
2,243,539 + yqaB MCAODC_11275 0.43 +1.3
2,243,539 + yqaB MCAODC_11275 0.43 -1.2
2,243,540 - yqaB MCAODC_11275 0.43 -1.7
2,243,552 - yqaB MCAODC_11275 0.45 +0.8
2,243,616 + yqaB MCAODC_11275 0.56 +0.5
2,243,679 - yqaB MCAODC_11275 0.67 -2.8
2,243,720 - yqaB MCAODC_11275 0.75 -1.2
2,243,758 + yqaB MCAODC_11275 0.81 +1.2
2,243,919 - yqaA MCAODC_11280 0.14 -0.1
2,243,922 - yqaA MCAODC_11280 0.14 +1.8
2,244,013 - yqaA MCAODC_11280 0.36 +0.5
2,244,013 - yqaA MCAODC_11280 0.36 -0.9

Or see this region's nucleotide sequence