Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt plsY and folB are separated by 105 nucleotides folB and bacA are separated by 90 nucleotides bacA and cca are separated by 180 nucleotides
MCAODC_09210: plsY - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 1,839,925 to 1,840,542
plsY
MCAODC_09215: folB - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 1,840,648 to 1,841,016
folB
MCAODC_09220: bacA - undecaprenyl-diphosphate phosphatase, at 1,841,107 to 1,841,928
bacA
MCAODC_09230: cca - fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca, at 1,842,109 to 1,843,347
cca
Position (kb) 1841
1842 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1840.139 kb on - strand, within plsY at 1840.139 kb on - strand, within plsY at 1840.150 kb on + strand, within plsY at 1840.237 kb on - strand, within plsY at 1840.237 kb on - strand, within plsY at 1840.288 kb on + strand, within plsY at 1840.288 kb on + strand, within plsY at 1840.289 kb on - strand, within plsY at 1840.289 kb on - strand, within plsY at 1840.315 kb on + strand, within plsY at 1840.315 kb on + strand, within plsY at 1840.316 kb on - strand, within plsY at 1840.375 kb on + strand, within plsY at 1840.375 kb on + strand, within plsY at 1840.376 kb on - strand, within plsY at 1840.396 kb on + strand, within plsY at 1840.396 kb on + strand, within plsY at 1840.396 kb on + strand, within plsY at 1840.396 kb on + strand, within plsY at 1840.397 kb on - strand, within plsY at 1840.397 kb on - strand, within plsY at 1840.397 kb on - strand, within plsY at 1840.397 kb on - strand, within plsY at 1840.397 kb on - strand, within plsY at 1840.397 kb on - strand, within plsY at 1840.397 kb on - strand, within plsY at 1840.398 kb on + strand, within plsY at 1840.398 kb on + strand, within plsY at 1840.398 kb on + strand, within plsY at 1840.398 kb on + strand, within plsY at 1840.398 kb on + strand, within plsY at 1840.399 kb on - strand, within plsY at 1840.399 kb on - strand, within plsY at 1840.399 kb on - strand, within plsY at 1840.399 kb on - strand, within plsY at 1840.399 kb on - strand, within plsY at 1840.399 kb on - strand, within plsY at 1840.399 kb on - strand, within plsY at 1840.403 kb on - strand, within plsY at 1840.403 kb on - strand, within plsY at 1840.411 kb on - strand, within plsY at 1840.506 kb on - strand at 1840.542 kb on + strand at 1840.542 kb on + strand at 1840.542 kb on + strand at 1840.542 kb on + strand at 1840.543 kb on - strand at 1840.543 kb on - strand at 1840.543 kb on - strand at 1840.543 kb on - strand at 1840.543 kb on - strand at 1840.590 kb on - strand at 1840.592 kb on + strand at 1840.592 kb on + strand at 1840.593 kb on - strand at 1840.593 kb on - strand at 1840.996 kb on - strand at 1841.021 kb on - strand at 1841.029 kb on + strand at 1841.030 kb on - strand at 1841.044 kb on + strand at 1841.044 kb on + strand at 1841.045 kb on - strand at 1841.063 kb on + strand at 1841.063 kb on + strand at 1841.064 kb on - strand at 1841.080 kb on - strand at 1841.087 kb on + strand at 1841.089 kb on + strand at 1841.102 kb on + strand at 1841.142 kb on - strand at 1841.196 kb on + strand, within bacA at 1841.196 kb on + strand, within bacA at 1841.197 kb on - strand, within bacA at 1841.202 kb on + strand, within bacA at 1841.202 kb on + strand, within bacA at 1841.203 kb on - strand, within bacA at 1841.203 kb on - strand, within bacA at 1841.203 kb on - strand, within bacA at 1841.203 kb on - strand, within bacA at 1841.288 kb on + strand, within bacA at 1841.288 kb on + strand, within bacA at 1841.288 kb on + strand, within bacA at 1841.289 kb on - strand, within bacA at 1841.375 kb on + strand, within bacA at 1841.476 kb on + strand, within bacA at 1841.477 kb on - strand, within bacA at 1841.477 kb on - strand, within bacA at 1841.559 kb on + strand, within bacA at 1841.559 kb on + strand, within bacA at 1841.559 kb on + strand, within bacA at 1841.560 kb on - strand, within bacA at 1841.560 kb on - strand, within bacA at 1841.560 kb on - strand, within bacA at 1841.560 kb on - strand, within bacA at 1841.560 kb on - strand, within bacA at 1841.566 kb on + strand, within bacA at 1841.566 kb on + strand, within bacA at 1841.566 kb on + strand, within bacA at 1841.566 kb on + strand, within bacA at 1841.567 kb on - strand, within bacA at 1841.580 kb on + strand, within bacA at 1841.743 kb on + strand, within bacA at 1841.743 kb on + strand, within bacA at 1841.832 kb on + strand, within bacA at 1841.854 kb on - strand at 1841.884 kb on + strand at 1841.892 kb on + strand at 1841.892 kb on + strand at 1841.893 kb on - strand at 1841.893 kb on - strand at 1841.911 kb on + strand at 1841.911 kb on + strand at 1841.911 kb on + strand at 1841.911 kb on + strand at 1841.911 kb on + strand at 1841.912 kb on - strand at 1841.912 kb on - strand at 1841.926 kb on + strand at 1841.937 kb on + strand at 1841.938 kb on - strand at 1841.938 kb on - strand at 1841.980 kb on + strand at 1842.035 kb on + strand at 1842.035 kb on + strand at 1842.036 kb on - strand at 1842.036 kb on - strand at 1842.044 kb on + strand at 1842.044 kb on + strand at 1842.045 kb on - strand at 1842.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 1,840,139 - plsY MCAODC_09210 0.35 -0.3 1,840,139 - plsY MCAODC_09210 0.35 -0.8 1,840,150 + plsY MCAODC_09210 0.36 +1.0 1,840,237 - plsY MCAODC_09210 0.50 +0.3 1,840,237 - plsY MCAODC_09210 0.50 -1.6 1,840,288 + plsY MCAODC_09210 0.59 -0.1 1,840,288 + plsY MCAODC_09210 0.59 -1.1 1,840,289 - plsY MCAODC_09210 0.59 -0.9 1,840,289 - plsY MCAODC_09210 0.59 +0.7 1,840,315 + plsY MCAODC_09210 0.63 +1.8 1,840,315 + plsY MCAODC_09210 0.63 -0.5 1,840,316 - plsY MCAODC_09210 0.63 +0.1 1,840,375 + plsY MCAODC_09210 0.73 -3.4 1,840,375 + plsY MCAODC_09210 0.73 -0.2 1,840,376 - plsY MCAODC_09210 0.73 -0.1 1,840,396 + plsY MCAODC_09210 0.76 +1.4 1,840,396 + plsY MCAODC_09210 0.76 -0.3 1,840,396 + plsY MCAODC_09210 0.76 -1.3 1,840,396 + plsY MCAODC_09210 0.76 +0.4 1,840,397 - plsY MCAODC_09210 0.76 -2.5 1,840,397 - plsY MCAODC_09210 0.76 -1.2 1,840,397 - plsY MCAODC_09210 0.76 -2.0 1,840,397 - plsY MCAODC_09210 0.76 +0.5 1,840,397 - plsY MCAODC_09210 0.76 +0.5 1,840,397 - plsY MCAODC_09210 0.76 -0.4 1,840,397 - plsY MCAODC_09210 0.76 +0.2 1,840,398 + plsY MCAODC_09210 0.77 +0.8 1,840,398 + plsY MCAODC_09210 0.77 +1.3 1,840,398 + plsY MCAODC_09210 0.77 +0.5 1,840,398 + plsY MCAODC_09210 0.77 +0.5 1,840,398 + plsY MCAODC_09210 0.77 +1.0 1,840,399 - plsY MCAODC_09210 0.77 -0.2 1,840,399 - plsY MCAODC_09210 0.77 +0.6 1,840,399 - plsY MCAODC_09210 0.77 -0.9 1,840,399 - plsY MCAODC_09210 0.77 +0.3 1,840,399 - plsY MCAODC_09210 0.77 +0.0 1,840,399 - plsY MCAODC_09210 0.77 -0.7 1,840,399 - plsY MCAODC_09210 0.77 +0.1 1,840,403 - plsY MCAODC_09210 0.77 +0.9 1,840,403 - plsY MCAODC_09210 0.77 -1.1 1,840,411 - plsY MCAODC_09210 0.79 +0.6 1,840,506 - -1.4 1,840,542 + +0.3 1,840,542 + -0.1 1,840,542 + +0.3 1,840,542 + +0.1 1,840,543 - +0.3 1,840,543 - +0.4 1,840,543 - -0.5 1,840,543 - +0.5 1,840,543 - +0.3 1,840,590 - +0.1 1,840,592 + +0.8 1,840,592 + -0.2 1,840,593 - +1.7 1,840,593 - -0.8 1,840,996 - +1.3 1,841,021 - -3.1 1,841,029 + -1.0 1,841,030 - -1.1 1,841,044 + -1.4 1,841,044 + +1.2 1,841,045 - +0.5 1,841,063 + -0.4 1,841,063 + -0.7 1,841,064 - -2.7 1,841,080 - -1.5 1,841,087 + +0.3 1,841,089 + -0.6 1,841,102 + -3.0 1,841,142 - -2.5 1,841,196 + bacA MCAODC_09220 0.11 -2.1 1,841,196 + bacA MCAODC_09220 0.11 +0.2 1,841,197 - bacA MCAODC_09220 0.11 -1.6 1,841,202 + bacA MCAODC_09220 0.12 -2.4 1,841,202 + bacA MCAODC_09220 0.12 -1.6 1,841,203 - bacA MCAODC_09220 0.12 -0.3 1,841,203 - bacA MCAODC_09220 0.12 -2.4 1,841,203 - bacA MCAODC_09220 0.12 +1.2 1,841,203 - bacA MCAODC_09220 0.12 -2.8 1,841,288 + bacA MCAODC_09220 0.22 -3.9 1,841,288 + bacA MCAODC_09220 0.22 -0.7 1,841,288 + bacA MCAODC_09220 0.22 -3.8 1,841,289 - bacA MCAODC_09220 0.22 +0.5 1,841,375 + bacA MCAODC_09220 0.33 -2.6 1,841,476 + bacA MCAODC_09220 0.45 -2.4 1,841,477 - bacA MCAODC_09220 0.45 -2.2 1,841,477 - bacA MCAODC_09220 0.45 -2.9 1,841,559 + bacA MCAODC_09220 0.55 -1.5 1,841,559 + bacA MCAODC_09220 0.55 -0.8 1,841,559 + bacA MCAODC_09220 0.55 +0.7 1,841,560 - bacA MCAODC_09220 0.55 -1.5 1,841,560 - bacA MCAODC_09220 0.55 -1.8 1,841,560 - bacA MCAODC_09220 0.55 -1.4 1,841,560 - bacA MCAODC_09220 0.55 -2.3 1,841,560 - bacA MCAODC_09220 0.55 -1.2 1,841,566 + bacA MCAODC_09220 0.56 -2.8 1,841,566 + bacA MCAODC_09220 0.56 -3.9 1,841,566 + bacA MCAODC_09220 0.56 -1.1 1,841,566 + bacA MCAODC_09220 0.56 -1.2 1,841,567 - bacA MCAODC_09220 0.56 -1.8 1,841,580 + bacA MCAODC_09220 0.58 +0.1 1,841,743 + bacA MCAODC_09220 0.77 -0.2 1,841,743 + bacA MCAODC_09220 0.77 -2.6 1,841,832 + bacA MCAODC_09220 0.88 -3.3 1,841,854 - -3.1 1,841,884 + -2.9 1,841,892 + -1.5 1,841,892 + -2.1 1,841,893 - -1.4 1,841,893 - -3.0 1,841,911 + +0.9 1,841,911 + -1.6 1,841,911 + -3.5 1,841,911 + -1.4 1,841,911 + -0.7 1,841,912 - -3.0 1,841,912 - +0.5 1,841,926 + -0.8 1,841,937 + +0.4 1,841,938 - -0.9 1,841,938 - +0.1 1,841,980 + -0.1 1,842,035 + +0.2 1,842,035 + +0.9 1,842,036 - +0.9 1,842,036 - -0.5 1,842,044 + -0.3 1,842,044 + +1.2 1,842,045 - -0.1 1,842,107 - +0.7
Or see this region's nucleotide sequence