Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihS and MCAODC_04540 are separated by 66 nucleotides MCAODC_04540 and tauE are separated by 60 nucleotides
MCAODC_04535: yihS - sulfoquinovose isomerase, at 917,825 to 919,066
yihS
MCAODC_04540: MCAODC_04540 - Aldose epimerase, at 919,133 to 920,035
_04540
MCAODC_04545: tauE - Sulfite exporter TauE/SafE, at 920,096 to 920,971
tauE
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 918.155 kb on + strand, within yihS at 918.234 kb on - strand, within yihS at 918.234 kb on - strand, within yihS at 918.257 kb on + strand, within yihS at 918.258 kb on - strand, within yihS at 918.326 kb on + strand, within yihS at 918.346 kb on + strand, within yihS at 918.369 kb on + strand, within yihS at 918.370 kb on - strand, within yihS at 918.377 kb on + strand, within yihS at 918.378 kb on - strand, within yihS at 918.384 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.458 kb on - strand, within yihS at 918.556 kb on + strand, within yihS at 918.556 kb on + strand, within yihS at 918.589 kb on - strand, within yihS at 918.649 kb on - strand, within yihS at 918.723 kb on - strand, within yihS at 918.723 kb on - strand, within yihS at 918.724 kb on + strand, within yihS at 918.725 kb on - strand, within yihS at 918.809 kb on + strand, within yihS at 918.809 kb on + strand, within yihS at 918.809 kb on + strand, within yihS at 918.810 kb on - strand, within yihS at 918.810 kb on - strand, within yihS at 918.875 kb on + strand, within yihS at 918.928 kb on + strand, within yihS at 918.928 kb on + strand, within yihS at 918.929 kb on - strand, within yihS at 918.929 kb on - strand, within yihS at 918.929 kb on - strand, within yihS at 918.964 kb on + strand at 918.968 kb on + strand at 918.968 kb on + strand at 918.968 kb on + strand at 918.969 kb on - strand at 918.969 kb on - strand at 918.969 kb on - strand at 918.969 kb on - strand at 919.104 kb on + strand at 919.105 kb on - strand at 919.105 kb on - strand at 919.119 kb on + strand at 919.119 kb on + strand at 919.254 kb on + strand, within MCAODC_04540 at 919.254 kb on + strand, within MCAODC_04540 at 919.254 kb on + strand, within MCAODC_04540 at 919.255 kb on - strand, within MCAODC_04540 at 919.255 kb on - strand, within MCAODC_04540 at 919.258 kb on + strand, within MCAODC_04540 at 919.267 kb on + strand, within MCAODC_04540 at 919.267 kb on + strand, within MCAODC_04540 at 919.268 kb on - strand, within MCAODC_04540 at 919.268 kb on - strand, within MCAODC_04540 at 919.309 kb on + strand, within MCAODC_04540 at 919.365 kb on - strand, within MCAODC_04540 at 919.447 kb on - strand, within MCAODC_04540 at 919.447 kb on - strand, within MCAODC_04540 at 919.491 kb on - strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.599 kb on - strand, within MCAODC_04540 at 919.619 kb on + strand, within MCAODC_04540 at 919.619 kb on + strand, within MCAODC_04540 at 919.624 kb on - strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.652 kb on + strand, within MCAODC_04540 at 919.652 kb on + strand, within MCAODC_04540 at 919.653 kb on - strand, within MCAODC_04540 at 919.653 kb on - strand, within MCAODC_04540 at 920.074 kb on + strand at 920.092 kb on + strand at 920.093 kb on - strand at 920.151 kb on + strand at 920.152 kb on - strand at 920.155 kb on + strand at 920.155 kb on + strand at 920.156 kb on - strand at 920.181 kb on - strand at 920.182 kb on + strand at 920.183 kb on - strand at 920.228 kb on - strand, within tauE at 920.307 kb on - strand, within tauE at 920.307 kb on - strand, within tauE at 920.307 kb on - strand, within tauE at 920.356 kb on - strand, within tauE at 920.396 kb on + strand, within tauE at 920.397 kb on - strand, within tauE at 920.409 kb on - strand, within tauE at 920.409 kb on - strand, within tauE at 920.413 kb on - strand, within tauE at 920.459 kb on + strand, within tauE at 920.460 kb on - strand, within tauE at 920.468 kb on + strand, within tauE at 920.469 kb on - strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.474 kb on - strand, within tauE at 920.480 kb on - strand, within tauE at 920.480 kb on - strand, within tauE at 920.480 kb on - strand, within tauE at 920.506 kb on + strand, within tauE at 920.524 kb on + strand, within tauE at 920.525 kb on - strand, within tauE at 920.525 kb on - strand, within tauE at 920.535 kb on + strand, within tauE at 920.547 kb on + strand, within tauE at 920.548 kb on - strand, within tauE at 920.588 kb on + strand, within tauE at 920.588 kb on + strand, within tauE at 920.588 kb on + strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.602 kb on + strand, within tauE at 920.603 kb on - strand, within tauE at 920.603 kb on - strand, within tauE at 920.607 kb on + strand, within tauE at 920.608 kb on - strand, within tauE at 920.768 kb on + strand, within tauE at 920.768 kb on + strand, within tauE at 920.768 kb on + strand, within tauE at 920.768 kb on + strand, within tauE at 920.769 kb on - strand, within tauE at 920.776 kb on + strand, within tauE at 920.777 kb on - strand, within tauE at 920.818 kb on - strand, within tauE at 920.818 kb on - strand, within tauE at 920.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 918,155 + yihS MCAODC_04535 0.27 +0.7 918,234 - yihS MCAODC_04535 0.33 -0.0 918,234 - yihS MCAODC_04535 0.33 -0.7 918,257 + yihS MCAODC_04535 0.35 -0.5 918,258 - yihS MCAODC_04535 0.35 +0.8 918,326 + yihS MCAODC_04535 0.40 -0.2 918,346 + yihS MCAODC_04535 0.42 +1.4 918,369 + yihS MCAODC_04535 0.44 +0.1 918,370 - yihS MCAODC_04535 0.44 -0.5 918,377 + yihS MCAODC_04535 0.44 -0.5 918,378 - yihS MCAODC_04535 0.45 -0.4 918,384 + yihS MCAODC_04535 0.45 +0.3 918,457 + yihS MCAODC_04535 0.51 +1.4 918,457 + yihS MCAODC_04535 0.51 +1.0 918,457 + yihS MCAODC_04535 0.51 -1.6 918,457 + yihS MCAODC_04535 0.51 +0.4 918,458 - yihS MCAODC_04535 0.51 -1.1 918,556 + yihS MCAODC_04535 0.59 +0.6 918,556 + yihS MCAODC_04535 0.59 +0.1 918,589 - yihS MCAODC_04535 0.62 -0.2 918,649 - yihS MCAODC_04535 0.66 -0.5 918,723 - yihS MCAODC_04535 0.72 +0.7 918,723 - yihS MCAODC_04535 0.72 -0.5 918,724 + yihS MCAODC_04535 0.72 -0.1 918,725 - yihS MCAODC_04535 0.72 -1.7 918,809 + yihS MCAODC_04535 0.79 -0.4 918,809 + yihS MCAODC_04535 0.79 +0.7 918,809 + yihS MCAODC_04535 0.79 +0.4 918,810 - yihS MCAODC_04535 0.79 -0.2 918,810 - yihS MCAODC_04535 0.79 -2.0 918,875 + yihS MCAODC_04535 0.85 -0.5 918,928 + yihS MCAODC_04535 0.89 +0.7 918,928 + yihS MCAODC_04535 0.89 -0.7 918,929 - yihS MCAODC_04535 0.89 +0.7 918,929 - yihS MCAODC_04535 0.89 -1.3 918,929 - yihS MCAODC_04535 0.89 +0.1 918,964 + +0.2 918,968 + +2.4 918,968 + +0.3 918,968 + +0.2 918,969 - +0.2 918,969 - +0.9 918,969 - -0.5 918,969 - +0.5 919,104 + +0.1 919,105 - -1.9 919,105 - -0.1 919,119 + -1.1 919,119 + +3.2 919,254 + MCAODC_04540 0.13 +0.2 919,254 + MCAODC_04540 0.13 -1.8 919,254 + MCAODC_04540 0.13 -0.0 919,255 - MCAODC_04540 0.14 +0.3 919,255 - MCAODC_04540 0.14 +0.2 919,258 + MCAODC_04540 0.14 -0.9 919,267 + MCAODC_04540 0.15 +0.4 919,267 + MCAODC_04540 0.15 +0.2 919,268 - MCAODC_04540 0.15 -0.1 919,268 - MCAODC_04540 0.15 -0.4 919,309 + MCAODC_04540 0.19 +0.4 919,365 - MCAODC_04540 0.26 -0.1 919,447 - MCAODC_04540 0.35 +0.4 919,447 - MCAODC_04540 0.35 -0.3 919,491 - MCAODC_04540 0.40 +0.6 919,598 + MCAODC_04540 0.51 -1.7 919,598 + MCAODC_04540 0.51 -0.1 919,598 + MCAODC_04540 0.51 +2.0 919,599 - MCAODC_04540 0.52 +0.2 919,619 + MCAODC_04540 0.54 +0.3 919,619 + MCAODC_04540 0.54 -0.0 919,624 - MCAODC_04540 0.54 -0.9 919,635 + MCAODC_04540 0.56 -0.5 919,635 + MCAODC_04540 0.56 +1.0 919,635 + MCAODC_04540 0.56 +1.2 919,635 + MCAODC_04540 0.56 +0.1 919,652 + MCAODC_04540 0.57 -1.1 919,652 + MCAODC_04540 0.57 +0.4 919,653 - MCAODC_04540 0.58 -0.4 919,653 - MCAODC_04540 0.58 -2.1 920,074 + +0.9 920,092 + -1.3 920,093 - +0.0 920,151 + +0.4 920,152 - -0.9 920,155 + -1.8 920,155 + -0.5 920,156 - -0.6 920,181 - -0.4 920,182 + -0.2 920,183 - -1.3 920,228 - tauE MCAODC_04545 0.15 -0.7 920,307 - tauE MCAODC_04545 0.24 +1.1 920,307 - tauE MCAODC_04545 0.24 -0.2 920,307 - tauE MCAODC_04545 0.24 -1.8 920,356 - tauE MCAODC_04545 0.30 +0.4 920,396 + tauE MCAODC_04545 0.34 +0.6 920,397 - tauE MCAODC_04545 0.34 +1.7 920,409 - tauE MCAODC_04545 0.36 -0.5 920,409 - tauE MCAODC_04545 0.36 -0.4 920,413 - tauE MCAODC_04545 0.36 -0.1 920,459 + tauE MCAODC_04545 0.41 +0.7 920,460 - tauE MCAODC_04545 0.42 +1.8 920,468 + tauE MCAODC_04545 0.42 +0.2 920,469 - tauE MCAODC_04545 0.43 -1.6 920,473 + tauE MCAODC_04545 0.43 +1.5 920,473 + tauE MCAODC_04545 0.43 +0.1 920,473 + tauE MCAODC_04545 0.43 -0.0 920,473 + tauE MCAODC_04545 0.43 -0.3 920,473 + tauE MCAODC_04545 0.43 -0.0 920,474 - tauE MCAODC_04545 0.43 +0.2 920,480 - tauE MCAODC_04545 0.44 -1.2 920,480 - tauE MCAODC_04545 0.44 +0.1 920,480 - tauE MCAODC_04545 0.44 +2.4 920,506 + tauE MCAODC_04545 0.47 -0.0 920,524 + tauE MCAODC_04545 0.49 -2.5 920,525 - tauE MCAODC_04545 0.49 +0.1 920,525 - tauE MCAODC_04545 0.49 +0.4 920,535 + tauE MCAODC_04545 0.50 +0.9 920,547 + tauE MCAODC_04545 0.51 -0.4 920,548 - tauE MCAODC_04545 0.52 +0.4 920,588 + tauE MCAODC_04545 0.56 +1.2 920,588 + tauE MCAODC_04545 0.56 +0.5 920,588 + tauE MCAODC_04545 0.56 +1.2 920,589 - tauE MCAODC_04545 0.56 +0.6 920,589 - tauE MCAODC_04545 0.56 -1.9 920,589 - tauE MCAODC_04545 0.56 +0.2 920,589 - tauE MCAODC_04545 0.56 +0.1 920,589 - tauE MCAODC_04545 0.56 +0.3 920,602 + tauE MCAODC_04545 0.58 -1.3 920,603 - tauE MCAODC_04545 0.58 +0.2 920,603 - tauE MCAODC_04545 0.58 +0.4 920,607 + tauE MCAODC_04545 0.58 +1.1 920,608 - tauE MCAODC_04545 0.58 +0.2 920,768 + tauE MCAODC_04545 0.77 +0.3 920,768 + tauE MCAODC_04545 0.77 -0.8 920,768 + tauE MCAODC_04545 0.77 -0.5 920,768 + tauE MCAODC_04545 0.77 +0.8 920,769 - tauE MCAODC_04545 0.77 -0.4 920,776 + tauE MCAODC_04545 0.78 +0.4 920,777 - tauE MCAODC_04545 0.78 +0.2 920,818 - tauE MCAODC_04545 0.82 -0.2 920,818 - tauE MCAODC_04545 0.82 +2.8 920,923 - -0.6
Or see this region's nucleotide sequence