Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt crfC and yjdM are separated by 401 nucleotides yjdM and yjdN are separated by 258 nucleotides yjdN and phnC are separated by 132 nucleotides phnC and phnD are separated by 24 nucleotides
MCAODC_03110: crfC - clamp-binding protein CrfC, at 630,253 to 632,481
crfC
MCAODC_03115: yjdM - Protein YjdM, at 632,883 to 633,218
yjdM
MCAODC_03130: yjdN - VOC family metalloprotein YjdN, at 633,477 to 633,920
yjdN
MCAODC_03135: phnC - phosphonate ABC transporter ATP-binding protein, at 634,053 to 634,841
phnC
MCAODC_03140: phnD - phosphonate ABC transporter substrate-binding protein, at 634,866 to 635,882
phnD
Position (kb) 633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 632.477 kb on + strand at 632.477 kb on + strand at 632.478 kb on - strand at 632.517 kb on + strand at 632.517 kb on + strand at 632.610 kb on - strand at 632.682 kb on - strand at 632.695 kb on + strand at 632.812 kb on + strand at 632.813 kb on - strand at 632.919 kb on + strand, within yjdM at 632.925 kb on + strand, within yjdM at 632.925 kb on + strand, within yjdM at 632.925 kb on + strand, within yjdM at 632.926 kb on - strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.965 kb on - strand, within yjdM at 633.014 kb on + strand, within yjdM at 633.024 kb on - strand, within yjdM at 633.087 kb on - strand, within yjdM at 633.087 kb on - strand, within yjdM at 633.150 kb on - strand, within yjdM at 633.222 kb on + strand at 633.222 kb on + strand at 633.222 kb on + strand at 633.223 kb on - strand at 633.223 kb on - strand at 633.253 kb on - strand at 633.304 kb on + strand at 633.313 kb on + strand at 633.446 kb on + strand at 633.460 kb on + strand at 633.484 kb on + strand at 633.492 kb on + strand at 633.493 kb on - strand at 633.531 kb on + strand, within yjdN at 633.532 kb on - strand, within yjdN at 633.534 kb on + strand, within yjdN at 633.542 kb on + strand, within yjdN at 633.542 kb on + strand, within yjdN at 633.542 kb on + strand, within yjdN at 633.543 kb on - strand, within yjdN at 633.566 kb on + strand, within yjdN at 633.567 kb on - strand, within yjdN at 633.704 kb on + strand, within yjdN at 633.704 kb on + strand, within yjdN at 633.705 kb on - strand, within yjdN at 633.705 kb on - strand, within yjdN at 633.705 kb on - strand, within yjdN at 633.705 kb on - strand, within yjdN at 633.706 kb on + strand, within yjdN at 633.707 kb on - strand, within yjdN at 633.726 kb on + strand, within yjdN at 633.726 kb on + strand, within yjdN at 633.737 kb on + strand, within yjdN at 633.737 kb on + strand, within yjdN at 633.737 kb on + strand, within yjdN at 633.890 kb on + strand at 633.890 kb on + strand at 633.890 kb on + strand at 633.890 kb on + strand at 633.891 kb on - strand at 633.891 kb on - strand at 633.891 kb on - strand at 633.990 kb on + strand at 634.065 kb on - strand at 634.192 kb on + strand, within phnC at 634.193 kb on - strand, within phnC at 634.193 kb on - strand, within phnC at 634.193 kb on - strand, within phnC at 634.193 kb on - strand, within phnC at 634.201 kb on + strand, within phnC at 634.202 kb on - strand, within phnC at 634.418 kb on + strand, within phnC at 634.453 kb on + strand, within phnC at 634.453 kb on + strand, within phnC at 634.454 kb on - strand, within phnC at 634.492 kb on - strand, within phnC at 634.695 kb on + strand, within phnC at 634.695 kb on + strand, within phnC at 634.696 kb on - strand, within phnC at 634.749 kb on + strand, within phnC at 634.874 kb on + strand at 634.874 kb on + strand at 634.875 kb on - strand at 634.879 kb on + strand at 634.880 kb on - strand at 634.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 632,477 + +0.4 632,477 + +0.2 632,478 - -0.7 632,517 + +0.4 632,517 + -0.8 632,610 - -0.3 632,682 - -0.3 632,695 + -0.5 632,812 + +0.2 632,813 - +0.3 632,919 + yjdM MCAODC_03115 0.11 -2.0 632,925 + yjdM MCAODC_03115 0.12 -1.1 632,925 + yjdM MCAODC_03115 0.12 -0.2 632,925 + yjdM MCAODC_03115 0.12 -0.2 632,926 - yjdM MCAODC_03115 0.13 +0.3 632,943 + yjdM MCAODC_03115 0.18 -1.0 632,943 + yjdM MCAODC_03115 0.18 +0.5 632,943 + yjdM MCAODC_03115 0.18 +0.2 632,943 + yjdM MCAODC_03115 0.18 +2.6 632,943 + yjdM MCAODC_03115 0.18 -0.8 632,943 + yjdM MCAODC_03115 0.18 -1.1 632,943 + yjdM MCAODC_03115 0.18 -0.4 632,943 + yjdM MCAODC_03115 0.18 +0.3 632,944 - yjdM MCAODC_03115 0.18 +0.8 632,944 - yjdM MCAODC_03115 0.18 +0.1 632,944 - yjdM MCAODC_03115 0.18 -0.2 632,944 - yjdM MCAODC_03115 0.18 +1.1 632,944 - yjdM MCAODC_03115 0.18 -0.6 632,944 - yjdM MCAODC_03115 0.18 +0.4 632,944 - yjdM MCAODC_03115 0.18 -0.7 632,944 - yjdM MCAODC_03115 0.18 +0.8 632,944 - yjdM MCAODC_03115 0.18 +0.2 632,944 - yjdM MCAODC_03115 0.18 -0.1 632,944 - yjdM MCAODC_03115 0.18 -0.8 632,965 - yjdM MCAODC_03115 0.24 -0.1 633,014 + yjdM MCAODC_03115 0.39 +0.5 633,024 - yjdM MCAODC_03115 0.42 -1.4 633,087 - yjdM MCAODC_03115 0.61 +0.2 633,087 - yjdM MCAODC_03115 0.61 -2.8 633,150 - yjdM MCAODC_03115 0.79 -0.2 633,222 + -0.3 633,222 + -0.2 633,222 + -1.6 633,223 - -1.4 633,223 - +0.5 633,253 - -1.1 633,304 + +1.8 633,313 + +1.5 633,446 + -1.3 633,460 + +1.7 633,484 + +1.3 633,492 + +0.2 633,493 - +1.4 633,531 + yjdN MCAODC_03130 0.12 -0.7 633,532 - yjdN MCAODC_03130 0.12 -0.3 633,534 + yjdN MCAODC_03130 0.13 -0.7 633,542 + yjdN MCAODC_03130 0.15 -0.8 633,542 + yjdN MCAODC_03130 0.15 +0.6 633,542 + yjdN MCAODC_03130 0.15 +0.5 633,543 - yjdN MCAODC_03130 0.15 +1.3 633,566 + yjdN MCAODC_03130 0.20 +0.4 633,567 - yjdN MCAODC_03130 0.20 +0.2 633,704 + yjdN MCAODC_03130 0.51 +0.1 633,704 + yjdN MCAODC_03130 0.51 +1.1 633,705 - yjdN MCAODC_03130 0.51 +0.9 633,705 - yjdN MCAODC_03130 0.51 -0.3 633,705 - yjdN MCAODC_03130 0.51 -1.1 633,705 - yjdN MCAODC_03130 0.51 +0.0 633,706 + yjdN MCAODC_03130 0.52 -0.4 633,707 - yjdN MCAODC_03130 0.52 -0.4 633,726 + yjdN MCAODC_03130 0.56 +0.6 633,726 + yjdN MCAODC_03130 0.56 +0.3 633,737 + yjdN MCAODC_03130 0.59 -0.1 633,737 + yjdN MCAODC_03130 0.59 -0.1 633,737 + yjdN MCAODC_03130 0.59 +0.0 633,890 + -1.5 633,890 + -0.1 633,890 + +0.7 633,890 + -0.5 633,891 - +0.1 633,891 - -0.5 633,891 - +0.9 633,990 + +1.6 634,065 - +0.1 634,192 + phnC MCAODC_03135 0.18 -0.8 634,193 - phnC MCAODC_03135 0.18 -0.2 634,193 - phnC MCAODC_03135 0.18 -0.2 634,193 - phnC MCAODC_03135 0.18 -1.7 634,193 - phnC MCAODC_03135 0.18 -1.1 634,201 + phnC MCAODC_03135 0.19 +0.3 634,202 - phnC MCAODC_03135 0.19 -0.3 634,418 + phnC MCAODC_03135 0.46 -0.4 634,453 + phnC MCAODC_03135 0.51 +0.2 634,453 + phnC MCAODC_03135 0.51 +0.8 634,454 - phnC MCAODC_03135 0.51 -0.3 634,492 - phnC MCAODC_03135 0.56 +0.6 634,695 + phnC MCAODC_03135 0.81 -0.4 634,695 + phnC MCAODC_03135 0.81 -0.8 634,696 - phnC MCAODC_03135 0.81 +0.2 634,749 + phnC MCAODC_03135 0.88 -0.2 634,874 + +1.5 634,874 + +0.1 634,875 - +0.6 634,879 + -0.5 634,880 - -0.8 634,880 - +0.7
Or see this region's nucleotide sequence