Strain Fitness in Escherichia coli ECRC101 around MCAODC_02835

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsgA and asd are separated by 96 nucleotidesasd and mscM are separated by 21 nucleotides MCAODC_02830: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 568,831 to 569,883 rsgA MCAODC_02835: asd - archaetidylserine decarboxylase, at 569,980 to 570,948 asd MCAODC_02840: mscM - miniconductance mechanosensitive channel MscM, at 570,970 to 574,293 mscM Position (kb) 569 570 571Strain fitness (log2 ratio) -2 -1 0 1at 569.872 kb on - strandat 569.888 kb on + strandat 569.888 kb on + strandat 569.888 kb on + strandat 569.888 kb on + strandat 569.888 kb on + strandat 569.893 kb on + strandat 569.903 kb on + strandat 569.937 kb on + strandat 569.937 kb on + strandat 569.937 kb on + strandat 570.833 kb on + strand, within asdat 570.833 kb on + strand, within asdat 570.833 kb on + strand, within asdat 570.833 kb on + strand, within asdat 570.833 kb on + strand, within asdat 570.837 kb on + strand, within asdat 570.838 kb on - strand, within asdat 570.852 kb on + strandat 570.853 kb on - strandat 570.946 kb on + strandat 570.981 kb on + strandat 571.022 kb on - strandat 571.106 kb on + strandat 571.107 kb on - strandat 571.127 kb on + strandat 571.127 kb on + strandat 571.128 kb on - strandat 571.175 kb on - strandat 571.191 kb on + strandat 571.275 kb on + strandat 571.276 kb on - strandat 571.326 kb on + strand, within mscMat 571.425 kb on - strand, within mscMat 571.425 kb on - strand, within mscMat 571.425 kb on - strand, within mscMat 571.465 kb on - strand, within mscMat 571.465 kb on - strand, within mscMat 571.465 kb on - strand, within mscMat 571.465 kb on - strand, within mscMat 571.465 kb on - strand, within mscMat 571.519 kb on - strand, within mscMat 571.519 kb on - strand, within mscMat 571.519 kb on - strand, within mscMat 571.578 kb on - strand, within mscMat 571.630 kb on + strand, within mscMat 571.631 kb on - strand, within mscMat 571.631 kb on - strand, within mscMat 571.631 kb on - strand, within mscMat 571.631 kb on - strand, within mscMat 571.631 kb on - strand, within mscMat 571.698 kb on + strand, within mscMat 571.699 kb on - strand, within mscMat 571.706 kb on + strand, within mscMat 571.707 kb on - strand, within mscMat 571.773 kb on - strand, within mscMat 571.872 kb on + strand, within mscMat 571.872 kb on + strand, within mscMat 571.873 kb on - strand, within mscMat 571.873 kb on - strand, within mscM

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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569,872 - -0.5
569,888 + -0.0
569,888 + +0.1
569,888 + -1.4
569,888 + -0.3
569,888 + +0.9
569,893 + -0.9
569,903 + -0.2
569,937 + +0.1
569,937 + +1.7
569,937 + -0.5
570,833 + asd MCAODC_02835 0.88 -0.1
570,833 + asd MCAODC_02835 0.88 -0.7
570,833 + asd MCAODC_02835 0.88 -0.2
570,833 + asd MCAODC_02835 0.88 -0.9
570,833 + asd MCAODC_02835 0.88 +0.2
570,837 + asd MCAODC_02835 0.88 +0.2
570,838 - asd MCAODC_02835 0.89 +0.5
570,852 + -0.0
570,853 - +1.1
570,946 + -0.2
570,981 + +0.2
571,022 - +1.3
571,106 + +1.0
571,107 - -2.3
571,127 + -1.1
571,127 + -0.5
571,128 - +0.3
571,175 - +0.1
571,191 + -0.8
571,275 + -0.4
571,276 - -1.7
571,326 + mscM MCAODC_02840 0.11 -0.3
571,425 - mscM MCAODC_02840 0.14 -0.3
571,425 - mscM MCAODC_02840 0.14 -0.3
571,425 - mscM MCAODC_02840 0.14 +0.3
571,465 - mscM MCAODC_02840 0.15 +0.4
571,465 - mscM MCAODC_02840 0.15 -2.3
571,465 - mscM MCAODC_02840 0.15 -0.4
571,465 - mscM MCAODC_02840 0.15 -1.6
571,465 - mscM MCAODC_02840 0.15 -0.9
571,519 - mscM MCAODC_02840 0.17 +0.7
571,519 - mscM MCAODC_02840 0.17 -0.9
571,519 - mscM MCAODC_02840 0.17 -1.5
571,578 - mscM MCAODC_02840 0.18 -0.1
571,630 + mscM MCAODC_02840 0.20 +0.6
571,631 - mscM MCAODC_02840 0.20 +1.6
571,631 - mscM MCAODC_02840 0.20 -0.9
571,631 - mscM MCAODC_02840 0.20 +0.4
571,631 - mscM MCAODC_02840 0.20 +0.3
571,631 - mscM MCAODC_02840 0.20 -0.3
571,698 + mscM MCAODC_02840 0.22 -1.1
571,699 - mscM MCAODC_02840 0.22 -0.6
571,706 + mscM MCAODC_02840 0.22 +0.3
571,707 - mscM MCAODC_02840 0.22 -0.8
571,773 - mscM MCAODC_02840 0.24 +1.0
571,872 + mscM MCAODC_02840 0.27 -0.6
571,872 + mscM MCAODC_02840 0.27 +0.5
571,873 - mscM MCAODC_02840 0.27 -0.3
571,873 - mscM MCAODC_02840 0.27 +1.1

Or see this region's nucleotide sequence