Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mpl and fbp are separated by 175 nucleotides fbp and yjfF are separated by 32 nucleotides
MCAODC_02445: mpl - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase, at 501,444 to 502,817
mpl
MCAODC_02450: fbp - class 1 fructose-bisphosphatase, at 502,993 to 503,991
fbp
MCAODC_02455: yjfF - sugar ABC transporter permease YjfF, at 504,024 to 505,019
yjfF
Position (kb) 502
503
504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 502.167 kb on - strand, within mpl at 502.167 kb on - strand, within mpl at 502.167 kb on - strand, within mpl at 502.169 kb on + strand, within mpl at 502.169 kb on + strand, within mpl at 502.169 kb on + strand, within mpl at 502.170 kb on - strand, within mpl at 502.170 kb on - strand, within mpl at 502.281 kb on - strand, within mpl at 502.333 kb on + strand, within mpl at 502.334 kb on - strand, within mpl at 502.334 kb on - strand, within mpl at 502.414 kb on - strand, within mpl at 502.429 kb on + strand, within mpl at 502.430 kb on - strand, within mpl at 502.553 kb on + strand, within mpl at 502.553 kb on + strand, within mpl at 502.553 kb on + strand, within mpl at 502.553 kb on + strand, within mpl at 502.553 kb on + strand, within mpl at 502.553 kb on + strand, within mpl at 502.553 kb on + strand, within mpl at 502.554 kb on - strand, within mpl at 502.554 kb on - strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.555 kb on + strand, within mpl at 502.556 kb on - strand, within mpl at 502.556 kb on - strand, within mpl at 502.556 kb on - strand, within mpl at 502.556 kb on - strand, within mpl at 502.556 kb on - strand, within mpl at 502.556 kb on - strand, within mpl at 502.619 kb on + strand, within mpl at 502.661 kb on - strand, within mpl at 502.661 kb on - strand, within mpl at 502.661 kb on - strand, within mpl at 502.696 kb on - strand at 502.696 kb on - strand at 502.696 kb on - strand at 502.696 kb on - strand at 502.696 kb on - strand at 502.714 kb on + strand at 502.738 kb on - strand at 502.750 kb on - strand at 502.750 kb on - strand at 502.750 kb on - strand at 502.800 kb on + strand at 502.835 kb on + strand at 502.852 kb on + strand at 502.852 kb on + strand at 502.858 kb on + strand at 502.858 kb on + strand at 502.858 kb on + strand at 502.858 kb on + strand at 502.859 kb on - strand at 502.859 kb on - strand at 502.859 kb on - strand at 502.859 kb on - strand at 502.859 kb on - strand at 502.897 kb on + strand at 502.937 kb on + strand at 502.993 kb on - strand at 503.003 kb on + strand at 503.004 kb on - strand at 503.004 kb on - strand at 503.013 kb on + strand at 503.014 kb on - strand at 503.078 kb on + strand at 503.079 kb on - strand at 503.098 kb on - strand, within fbp at 503.235 kb on + strand, within fbp at 503.305 kb on + strand, within fbp at 503.305 kb on + strand, within fbp at 503.306 kb on - strand, within fbp at 503.306 kb on - strand, within fbp at 503.383 kb on + strand, within fbp at 503.384 kb on - strand, within fbp at 503.394 kb on + strand, within fbp at 503.394 kb on + strand, within fbp at 503.395 kb on - strand, within fbp at 503.395 kb on - strand, within fbp at 503.473 kb on + strand, within fbp at 503.473 kb on + strand, within fbp at 503.473 kb on + strand, within fbp at 503.473 kb on + strand, within fbp at 503.497 kb on + strand, within fbp at 503.497 kb on + strand, within fbp at 503.497 kb on + strand, within fbp at 503.526 kb on + strand, within fbp at 503.526 kb on + strand, within fbp at 503.530 kb on + strand, within fbp at 503.530 kb on + strand, within fbp at 503.530 kb on + strand, within fbp at 503.599 kb on + strand, within fbp at 503.599 kb on + strand, within fbp at 503.600 kb on - strand, within fbp at 503.620 kb on + strand, within fbp at 503.620 kb on + strand, within fbp at 503.621 kb on - strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.626 kb on - strand, within fbp at 503.650 kb on + strand, within fbp at 503.650 kb on + strand, within fbp at 503.650 kb on + strand, within fbp at 503.676 kb on + strand, within fbp at 503.698 kb on - strand, within fbp at 503.698 kb on - strand, within fbp at 503.698 kb on - strand, within fbp at 503.698 kb on - strand, within fbp at 503.707 kb on + strand, within fbp at 503.707 kb on + strand, within fbp at 503.708 kb on - strand, within fbp at 503.710 kb on - strand, within fbp at 503.757 kb on + strand, within fbp at 503.813 kb on - strand, within fbp at 503.880 kb on + strand, within fbp at 503.881 kb on - strand, within fbp at 503.881 kb on - strand, within fbp at 503.889 kb on + strand, within fbp at 503.889 kb on + strand, within fbp at 503.890 kb on - strand, within fbp at 503.943 kb on + strand at 503.944 kb on - strand at 503.944 kb on - strand at 503.967 kb on + strand at 504.099 kb on + strand at 504.100 kb on - strand at 504.174 kb on + strand, within yjfF at 504.175 kb on - strand, within yjfF at 504.175 kb on - strand, within yjfF at 504.175 kb on - strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.179 kb on - strand, within yjfF at 504.179 kb on - strand, within yjfF at 504.179 kb on - strand, within yjfF at 504.222 kb on + strand, within yjfF at 504.223 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.298 kb on - strand, within yjfF at 504.377 kb on + strand, within yjfF at 504.377 kb on + strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.379 kb on + strand, within yjfF at 504.379 kb on + strand, within yjfF at 504.379 kb on + strand, within yjfF at 504.380 kb on - strand, within yjfF at 504.380 kb on - strand, within yjfF at 504.389 kb on + strand, within yjfF at 504.389 kb on + strand, within yjfF at 504.390 kb on - strand, within yjfF at 504.451 kb on + strand, within yjfF at 504.452 kb on - strand, within yjfF at 504.452 kb on - strand, within yjfF at 504.489 kb on + strand, within yjfF at 504.489 kb on + strand, within yjfF at 504.534 kb on + strand, within yjfF at 504.534 kb on + strand, within yjfF at 504.534 kb on + strand, within yjfF at 504.535 kb on - strand, within yjfF at 504.535 kb on - strand, within yjfF at 504.583 kb on + strand, within yjfF at 504.625 kb on + strand, within yjfF at 504.662 kb on + strand, within yjfF at 504.663 kb on - strand, within yjfF at 504.663 kb on - strand, within yjfF at 504.663 kb on - strand, within yjfF at 504.668 kb on + strand, within yjfF at 504.668 kb on + strand, within yjfF at 504.669 kb on - strand, within yjfF at 504.669 kb on - strand, within yjfF at 504.669 kb on - strand, within yjfF at 504.707 kb on + strand, within yjfF at 504.707 kb on + strand, within yjfF at 504.909 kb on - strand, within yjfF at 504.964 kb on + strand at 504.964 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 502,167 - mpl MCAODC_02445 0.53 +0.3 502,167 - mpl MCAODC_02445 0.53 -0.1 502,167 - mpl MCAODC_02445 0.53 +1.5 502,169 + mpl MCAODC_02445 0.53 +1.7 502,169 + mpl MCAODC_02445 0.53 +0.7 502,169 + mpl MCAODC_02445 0.53 +0.3 502,170 - mpl MCAODC_02445 0.53 +1.0 502,170 - mpl MCAODC_02445 0.53 +1.1 502,281 - mpl MCAODC_02445 0.61 +0.4 502,333 + mpl MCAODC_02445 0.65 -0.9 502,334 - mpl MCAODC_02445 0.65 -0.7 502,334 - mpl MCAODC_02445 0.65 +0.9 502,414 - mpl MCAODC_02445 0.71 +1.5 502,429 + mpl MCAODC_02445 0.72 -0.8 502,430 - mpl MCAODC_02445 0.72 +1.0 502,553 + mpl MCAODC_02445 0.81 -0.2 502,553 + mpl MCAODC_02445 0.81 +1.7 502,553 + mpl MCAODC_02445 0.81 +0.7 502,553 + mpl MCAODC_02445 0.81 -0.3 502,553 + mpl MCAODC_02445 0.81 +0.2 502,553 + mpl MCAODC_02445 0.81 +0.2 502,553 + mpl MCAODC_02445 0.81 -1.2 502,554 - mpl MCAODC_02445 0.81 -1.2 502,554 - mpl MCAODC_02445 0.81 -0.3 502,555 + mpl MCAODC_02445 0.81 +0.3 502,555 + mpl MCAODC_02445 0.81 +2.4 502,555 + mpl MCAODC_02445 0.81 -0.5 502,555 + mpl MCAODC_02445 0.81 +0.6 502,555 + mpl MCAODC_02445 0.81 -0.3 502,555 + mpl MCAODC_02445 0.81 +1.6 502,555 + mpl MCAODC_02445 0.81 +0.1 502,555 + mpl MCAODC_02445 0.81 +0.7 502,555 + mpl MCAODC_02445 0.81 +0.6 502,555 + mpl MCAODC_02445 0.81 +0.4 502,556 - mpl MCAODC_02445 0.81 +1.2 502,556 - mpl MCAODC_02445 0.81 +0.5 502,556 - mpl MCAODC_02445 0.81 +0.3 502,556 - mpl MCAODC_02445 0.81 -0.7 502,556 - mpl MCAODC_02445 0.81 +0.5 502,556 - mpl MCAODC_02445 0.81 +1.2 502,619 + mpl MCAODC_02445 0.86 -0.4 502,661 - mpl MCAODC_02445 0.89 -1.3 502,661 - mpl MCAODC_02445 0.89 +1.3 502,661 - mpl MCAODC_02445 0.89 +0.3 502,696 - +0.1 502,696 - +0.2 502,696 - +0.3 502,696 - +0.3 502,696 - -0.2 502,714 + +0.9 502,738 - +1.9 502,750 - +0.8 502,750 - -1.7 502,750 - +0.7 502,800 + -0.4 502,835 + -0.1 502,852 + -1.3 502,852 + +0.9 502,858 + +0.6 502,858 + +1.3 502,858 + -0.6 502,858 + +0.3 502,859 - +2.0 502,859 - -0.1 502,859 - -1.2 502,859 - -0.0 502,859 - +0.2 502,897 + +0.9 502,937 + +0.8 502,993 - -4.1 503,003 + -0.7 503,004 - -0.3 503,004 - -1.6 503,013 + -1.6 503,014 - -2.7 503,078 + -1.5 503,079 - -2.3 503,098 - fbp MCAODC_02450 0.11 -0.5 503,235 + fbp MCAODC_02450 0.24 -3.4 503,305 + fbp MCAODC_02450 0.31 -3.4 503,305 + fbp MCAODC_02450 0.31 -2.1 503,306 - fbp MCAODC_02450 0.31 -0.2 503,306 - fbp MCAODC_02450 0.31 -1.5 503,383 + fbp MCAODC_02450 0.39 -3.3 503,384 - fbp MCAODC_02450 0.39 -3.5 503,394 + fbp MCAODC_02450 0.40 -3.3 503,394 + fbp MCAODC_02450 0.40 -2.3 503,395 - fbp MCAODC_02450 0.40 -0.7 503,395 - fbp MCAODC_02450 0.40 +1.0 503,473 + fbp MCAODC_02450 0.48 -1.5 503,473 + fbp MCAODC_02450 0.48 -3.5 503,473 + fbp MCAODC_02450 0.48 -0.6 503,473 + fbp MCAODC_02450 0.48 -3.4 503,497 + fbp MCAODC_02450 0.50 -2.9 503,497 + fbp MCAODC_02450 0.50 -1.4 503,497 + fbp MCAODC_02450 0.50 -2.1 503,526 + fbp MCAODC_02450 0.53 -2.0 503,526 + fbp MCAODC_02450 0.53 -1.4 503,530 + fbp MCAODC_02450 0.54 -3.4 503,530 + fbp MCAODC_02450 0.54 -1.7 503,530 + fbp MCAODC_02450 0.54 -3.1 503,599 + fbp MCAODC_02450 0.61 -3.3 503,599 + fbp MCAODC_02450 0.61 -2.3 503,600 - fbp MCAODC_02450 0.61 -1.6 503,620 + fbp MCAODC_02450 0.63 -2.3 503,620 + fbp MCAODC_02450 0.63 -2.5 503,621 - fbp MCAODC_02450 0.63 -0.6 503,625 + fbp MCAODC_02450 0.63 -2.1 503,625 + fbp MCAODC_02450 0.63 +0.4 503,625 + fbp MCAODC_02450 0.63 -1.7 503,625 + fbp MCAODC_02450 0.63 -2.7 503,625 + fbp MCAODC_02450 0.63 -0.9 503,626 - fbp MCAODC_02450 0.63 -0.5 503,650 + fbp MCAODC_02450 0.66 -1.1 503,650 + fbp MCAODC_02450 0.66 +0.6 503,650 + fbp MCAODC_02450 0.66 -0.2 503,676 + fbp MCAODC_02450 0.68 -2.6 503,698 - fbp MCAODC_02450 0.71 -1.4 503,698 - fbp MCAODC_02450 0.71 -0.8 503,698 - fbp MCAODC_02450 0.71 -0.9 503,698 - fbp MCAODC_02450 0.71 -3.0 503,707 + fbp MCAODC_02450 0.71 -2.8 503,707 + fbp MCAODC_02450 0.71 +2.3 503,708 - fbp MCAODC_02450 0.72 -2.4 503,710 - fbp MCAODC_02450 0.72 -1.7 503,757 + fbp MCAODC_02450 0.76 -2.4 503,813 - fbp MCAODC_02450 0.82 -2.8 503,880 + fbp MCAODC_02450 0.89 -0.1 503,881 - fbp MCAODC_02450 0.89 -2.2 503,881 - fbp MCAODC_02450 0.89 +0.7 503,889 + fbp MCAODC_02450 0.90 -2.4 503,889 + fbp MCAODC_02450 0.90 -2.7 503,890 - fbp MCAODC_02450 0.90 -2.4 503,943 + -2.0 503,944 - -2.5 503,944 - -0.6 503,967 + -0.6 504,099 + +0.3 504,100 - -0.1 504,174 + yjfF MCAODC_02455 0.15 +1.1 504,175 - yjfF MCAODC_02455 0.15 +0.5 504,175 - yjfF MCAODC_02455 0.15 +1.1 504,175 - yjfF MCAODC_02455 0.15 +2.3 504,178 + yjfF MCAODC_02455 0.15 -0.7 504,178 + yjfF MCAODC_02455 0.15 +0.4 504,178 + yjfF MCAODC_02455 0.15 -1.1 504,178 + yjfF MCAODC_02455 0.15 +0.2 504,179 - yjfF MCAODC_02455 0.16 -1.5 504,179 - yjfF MCAODC_02455 0.16 -1.3 504,179 - yjfF MCAODC_02455 0.16 +0.8 504,222 + yjfF MCAODC_02455 0.20 -1.3 504,223 - yjfF MCAODC_02455 0.20 -0.9 504,226 - yjfF MCAODC_02455 0.20 +0.7 504,226 - yjfF MCAODC_02455 0.20 -1.0 504,226 - yjfF MCAODC_02455 0.20 -1.2 504,226 - yjfF MCAODC_02455 0.20 +1.0 504,298 - yjfF MCAODC_02455 0.28 -0.7 504,377 + yjfF MCAODC_02455 0.35 +0.4 504,377 + yjfF MCAODC_02455 0.35 -0.4 504,378 - yjfF MCAODC_02455 0.36 -1.0 504,378 - yjfF MCAODC_02455 0.36 +0.2 504,378 - yjfF MCAODC_02455 0.36 -1.0 504,378 - yjfF MCAODC_02455 0.36 +0.7 504,378 - yjfF MCAODC_02455 0.36 -0.2 504,378 - yjfF MCAODC_02455 0.36 -0.9 504,379 + yjfF MCAODC_02455 0.36 -1.7 504,379 + yjfF MCAODC_02455 0.36 +0.8 504,379 + yjfF MCAODC_02455 0.36 +0.9 504,380 - yjfF MCAODC_02455 0.36 +0.3 504,380 - yjfF MCAODC_02455 0.36 +0.7 504,389 + yjfF MCAODC_02455 0.37 -0.8 504,389 + yjfF MCAODC_02455 0.37 +0.1 504,390 - yjfF MCAODC_02455 0.37 -0.1 504,451 + yjfF MCAODC_02455 0.43 -0.6 504,452 - yjfF MCAODC_02455 0.43 +0.3 504,452 - yjfF MCAODC_02455 0.43 +0.8 504,489 + yjfF MCAODC_02455 0.47 +0.0 504,489 + yjfF MCAODC_02455 0.47 +0.0 504,534 + yjfF MCAODC_02455 0.51 -0.6 504,534 + yjfF MCAODC_02455 0.51 +1.7 504,534 + yjfF MCAODC_02455 0.51 +0.2 504,535 - yjfF MCAODC_02455 0.51 +0.2 504,535 - yjfF MCAODC_02455 0.51 +2.6 504,583 + yjfF MCAODC_02455 0.56 -0.2 504,625 + yjfF MCAODC_02455 0.60 +1.3 504,662 + yjfF MCAODC_02455 0.64 +2.3 504,663 - yjfF MCAODC_02455 0.64 +1.0 504,663 - yjfF MCAODC_02455 0.64 +0.5 504,663 - yjfF MCAODC_02455 0.64 +0.7 504,668 + yjfF MCAODC_02455 0.65 -1.5 504,668 + yjfF MCAODC_02455 0.65 +1.2 504,669 - yjfF MCAODC_02455 0.65 -0.3 504,669 - yjfF MCAODC_02455 0.65 -0.9 504,669 - yjfF MCAODC_02455 0.65 +0.5 504,707 + yjfF MCAODC_02455 0.69 -0.2 504,707 + yjfF MCAODC_02455 0.69 -0.4 504,909 - yjfF MCAODC_02455 0.89 +0.9 504,964 + +0.6 504,964 + +0.1
Or see this region's nucleotide sequence