Strain Fitness in Escherichia coli ECRC101 around MCAODC_02130

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimE and fimB are separated by 477 nucleotides MCAODC_02125: fimE - type 1 fimbria switch DNA invertase FimE, at 418,076 to 418,672 fimE MCAODC_02130: fimB - type 1 fimbria switch DNA invertase FimB, at 419,150 to 419,752 fimB Position (kb) 419 420Strain fitness (log2 ratio) -2 -1 0 1 2at 418.150 kb on + strand, within fimEat 418.160 kb on - strand, within fimEat 418.160 kb on - strand, within fimEat 418.161 kb on + strand, within fimEat 418.161 kb on + strand, within fimEat 418.162 kb on - strand, within fimEat 418.166 kb on + strand, within fimEat 418.167 kb on - strand, within fimEat 418.167 kb on - strand, within fimEat 418.172 kb on - strand, within fimEat 418.208 kb on + strand, within fimEat 418.208 kb on + strand, within fimEat 418.259 kb on + strand, within fimEat 418.260 kb on - strand, within fimEat 418.264 kb on + strand, within fimEat 418.265 kb on - strand, within fimEat 418.265 kb on - strand, within fimEat 418.265 kb on - strand, within fimEat 418.363 kb on + strand, within fimEat 418.364 kb on - strand, within fimEat 418.367 kb on + strand, within fimEat 418.367 kb on + strand, within fimEat 418.368 kb on - strand, within fimEat 418.409 kb on + strand, within fimEat 418.410 kb on - strand, within fimEat 418.546 kb on + strand, within fimEat 418.550 kb on - strand, within fimEat 418.579 kb on + strand, within fimEat 418.579 kb on + strand, within fimEat 418.588 kb on - strand, within fimEat 418.675 kb on + strandat 418.678 kb on + strandat 418.688 kb on - strandat 418.698 kb on + strandat 418.699 kb on - strandat 418.748 kb on + strandat 418.873 kb on + strandat 419.103 kb on + strandat 419.146 kb on - strandat 419.224 kb on + strand, within fimBat 419.226 kb on + strand, within fimBat 419.273 kb on - strand, within fimBat 419.285 kb on + strand, within fimBat 419.286 kb on - strand, within fimBat 419.380 kb on + strand, within fimBat 419.380 kb on + strand, within fimBat 419.380 kb on + strand, within fimBat 419.381 kb on - strand, within fimBat 419.381 kb on - strand, within fimBat 419.381 kb on - strand, within fimBat 419.384 kb on - strand, within fimBat 419.388 kb on + strand, within fimBat 419.458 kb on - strand, within fimBat 419.554 kb on - strand, within fimBat 419.674 kb on + strand, within fimBat 419.793 kb on - strandat 419.804 kb on - strandat 419.911 kb on + strandat 419.912 kb on - strandat 419.996 kb on - strandat 420.033 kb on - strandat 420.201 kb on - strandat 420.261 kb on + strandat 420.274 kb on - strandat 420.284 kb on + strandat 420.285 kb on - strandat 420.316 kb on + strandat 420.334 kb on + strandat 420.335 kb on - strandat 420.348 kb on - strandat 420.354 kb on + strandat 420.403 kb on + strandat 420.438 kb on + strandat 420.439 kb on - strandat 420.439 kb on - strandat 420.439 kb on - strandat 420.474 kb on - strandat 420.496 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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418,150 + fimE MCAODC_02125 0.12 -0.3
418,160 - fimE MCAODC_02125 0.14 +1.9
418,160 - fimE MCAODC_02125 0.14 -0.5
418,161 + fimE MCAODC_02125 0.14 +0.1
418,161 + fimE MCAODC_02125 0.14 +0.5
418,162 - fimE MCAODC_02125 0.14 +1.9
418,166 + fimE MCAODC_02125 0.15 -0.3
418,167 - fimE MCAODC_02125 0.15 +2.0
418,167 - fimE MCAODC_02125 0.15 +0.3
418,172 - fimE MCAODC_02125 0.16 -2.6
418,208 + fimE MCAODC_02125 0.22 +0.4
418,208 + fimE MCAODC_02125 0.22 -1.3
418,259 + fimE MCAODC_02125 0.31 +0.6
418,260 - fimE MCAODC_02125 0.31 -0.5
418,264 + fimE MCAODC_02125 0.31 +1.7
418,265 - fimE MCAODC_02125 0.32 -0.7
418,265 - fimE MCAODC_02125 0.32 +0.6
418,265 - fimE MCAODC_02125 0.32 -0.9
418,363 + fimE MCAODC_02125 0.48 -0.7
418,364 - fimE MCAODC_02125 0.48 -1.4
418,367 + fimE MCAODC_02125 0.49 -2.4
418,367 + fimE MCAODC_02125 0.49 -0.1
418,368 - fimE MCAODC_02125 0.49 -0.1
418,409 + fimE MCAODC_02125 0.56 +0.5
418,410 - fimE MCAODC_02125 0.56 +0.5
418,546 + fimE MCAODC_02125 0.79 -0.1
418,550 - fimE MCAODC_02125 0.79 +0.2
418,579 + fimE MCAODC_02125 0.84 +0.0
418,579 + fimE MCAODC_02125 0.84 +1.3
418,588 - fimE MCAODC_02125 0.86 +0.9
418,675 + -0.2
418,678 + +1.2
418,688 - +0.2
418,698 + +0.5
418,699 - -1.1
418,748 + -1.6
418,873 + -0.2
419,103 + -0.3
419,146 - -0.1
419,224 + fimB MCAODC_02130 0.12 +0.5
419,226 + fimB MCAODC_02130 0.13 -0.1
419,273 - fimB MCAODC_02130 0.20 +0.2
419,285 + fimB MCAODC_02130 0.22 -0.2
419,286 - fimB MCAODC_02130 0.23 -1.6
419,380 + fimB MCAODC_02130 0.38 -0.8
419,380 + fimB MCAODC_02130 0.38 -0.5
419,380 + fimB MCAODC_02130 0.38 +0.5
419,381 - fimB MCAODC_02130 0.38 +0.3
419,381 - fimB MCAODC_02130 0.38 -0.0
419,381 - fimB MCAODC_02130 0.38 -0.2
419,384 - fimB MCAODC_02130 0.39 +0.3
419,388 + fimB MCAODC_02130 0.39 +1.3
419,458 - fimB MCAODC_02130 0.51 -0.8
419,554 - fimB MCAODC_02130 0.67 -1.1
419,674 + fimB MCAODC_02130 0.87 -0.5
419,793 - -0.0
419,804 - +0.2
419,911 + -0.4
419,912 - +0.2
419,996 - +0.5
420,033 - -0.5
420,201 - +0.9
420,261 + +1.1
420,274 - +0.4
420,284 + -0.0
420,285 - -0.6
420,316 + +0.3
420,334 + +0.6
420,335 - +0.9
420,348 - -0.5
420,354 + -0.2
420,403 + -0.3
420,438 + -0.6
420,439 - -0.5
420,439 - +0.9
420,439 - -0.5
420,474 - -0.8
420,496 + +0.4

Or see this region's nucleotide sequence