Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gmrSD and yjiS are separated by 96 nucleotides yjiS and yjiR are separated by 176 nucleotides yjiR and MCAODC_01970 are separated by 242 nucleotides MCAODC_01970 and rpnD overlap by 26 nucleotides
MCAODC_01955: gmrSD - DUF262 domain-containing protein, at 379,608 to 380,489
gmrSD
MCAODC_01960: yjiS - DUF1127 domain-containing protein, at 380,586 to 380,750
yjiS
MCAODC_01965: yjiR - Uncharacterized HTH-type transcriptional regulator YjiR, at 380,927 to 382,339
yjiR
MCAODC_01970: MCAODC_01970 - Putative transposase, YhgA-like, at 382,582 to 382,782
_01970
MCAODC_01975: rpnD - Recombination-promoting nuclease RpnD, at 382,757 to 383,539
rpnD
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 379.960 kb on - strand, within gmrSD at 379.960 kb on - strand, within gmrSD at 380.035 kb on + strand, within gmrSD at 380.149 kb on + strand, within gmrSD at 380.294 kb on - strand, within gmrSD at 380.307 kb on + strand, within gmrSD at 380.307 kb on + strand, within gmrSD at 380.308 kb on - strand, within gmrSD at 380.310 kb on - strand, within gmrSD at 380.310 kb on - strand, within gmrSD at 380.310 kb on - strand, within gmrSD at 380.312 kb on - strand, within gmrSD at 380.312 kb on - strand, within gmrSD at 380.312 kb on - strand, within gmrSD at 380.341 kb on - strand, within gmrSD at 380.341 kb on - strand, within gmrSD at 380.342 kb on + strand, within gmrSD at 380.343 kb on - strand, within gmrSD at 380.410 kb on + strand at 380.411 kb on - strand at 380.422 kb on + strand at 380.432 kb on + strand at 380.466 kb on + strand at 380.566 kb on - strand at 380.580 kb on + strand at 380.581 kb on - strand at 380.581 kb on - strand at 380.581 kb on - strand at 380.646 kb on + strand, within yjiS at 380.646 kb on + strand, within yjiS at 380.765 kb on + strand at 380.766 kb on - strand at 380.806 kb on + strand at 380.807 kb on - strand at 380.807 kb on - strand at 380.819 kb on - strand at 380.904 kb on - strand at 380.922 kb on - strand at 380.955 kb on + strand at 380.955 kb on + strand at 380.956 kb on - strand at 380.956 kb on - strand at 380.956 kb on - strand at 380.956 kb on - strand at 381.021 kb on + strand at 381.133 kb on + strand, within yjiR at 381.133 kb on + strand, within yjiR at 381.214 kb on + strand, within yjiR at 381.309 kb on + strand, within yjiR at 381.310 kb on - strand, within yjiR at 381.328 kb on + strand, within yjiR at 381.329 kb on - strand, within yjiR at 381.375 kb on + strand, within yjiR at 381.376 kb on - strand, within yjiR at 381.493 kb on + strand, within yjiR at 381.505 kb on + strand, within yjiR at 381.533 kb on + strand, within yjiR at 381.650 kb on - strand, within yjiR at 381.650 kb on - strand, within yjiR at 381.676 kb on + strand, within yjiR at 381.677 kb on - strand, within yjiR at 381.679 kb on + strand, within yjiR at 381.679 kb on + strand, within yjiR at 381.680 kb on - strand, within yjiR at 381.695 kb on - strand, within yjiR at 381.774 kb on - strand, within yjiR at 381.862 kb on + strand, within yjiR at 381.868 kb on + strand, within yjiR at 381.869 kb on - strand, within yjiR at 381.869 kb on - strand, within yjiR at 381.931 kb on + strand, within yjiR at 381.931 kb on + strand, within yjiR at 381.931 kb on + strand, within yjiR at 381.931 kb on + strand, within yjiR at 381.938 kb on + strand, within yjiR at 381.955 kb on + strand, within yjiR at 381.955 kb on + strand, within yjiR at 381.956 kb on - strand, within yjiR at 382.007 kb on + strand, within yjiR at 382.007 kb on + strand, within yjiR at 382.007 kb on + strand, within yjiR at 382.008 kb on - strand, within yjiR at 382.008 kb on - strand, within yjiR at 382.008 kb on - strand, within yjiR at 382.040 kb on + strand, within yjiR at 382.040 kb on + strand, within yjiR at 382.040 kb on + strand, within yjiR at 382.061 kb on + strand, within yjiR at 382.061 kb on + strand, within yjiR at 382.062 kb on - strand, within yjiR at 382.062 kb on - strand, within yjiR at 382.062 kb on - strand, within yjiR at 382.062 kb on - strand, within yjiR at 382.063 kb on + strand, within yjiR at 382.063 kb on + strand, within yjiR at 382.063 kb on + strand, within yjiR at 382.063 kb on + strand, within yjiR at 382.064 kb on - strand, within yjiR at 382.064 kb on - strand, within yjiR at 382.102 kb on + strand, within yjiR at 382.105 kb on + strand, within yjiR at 382.106 kb on - strand, within yjiR at 382.106 kb on - strand, within yjiR at 382.137 kb on + strand, within yjiR at 382.238 kb on + strand at 382.238 kb on + strand at 382.239 kb on - strand at 382.243 kb on + strand at 382.338 kb on - strand at 382.343 kb on - strand at 382.343 kb on - strand at 382.397 kb on + strand at 382.397 kb on + strand at 382.413 kb on + strand at 382.413 kb on + strand at 382.414 kb on - strand at 382.414 kb on - strand at 382.434 kb on + strand at 382.601 kb on + strand at 382.630 kb on + strand, within MCAODC_01970 at 382.631 kb on - strand, within MCAODC_01970 at 382.631 kb on - strand, within MCAODC_01970 at 382.673 kb on - strand, within MCAODC_01970 at 382.759 kb on - strand at 382.783 kb on + strand at 382.783 kb on + strand at 382.809 kb on - strand at 382.841 kb on + strand, within rpnD at 382.841 kb on + strand, within rpnD at 382.841 kb on + strand, within rpnD at 382.842 kb on - strand, within rpnD at 382.842 kb on - strand, within rpnD at 382.842 kb on - strand, within rpnD at 382.852 kb on + strand, within rpnD at 382.853 kb on - strand, within rpnD at 382.886 kb on + strand, within rpnD at 382.898 kb on + strand, within rpnD at 382.899 kb on - strand, within rpnD at 382.910 kb on + strand, within rpnD at 382.910 kb on + strand, within rpnD at 382.911 kb on - strand, within rpnD at 382.924 kb on + strand, within rpnD at 382.943 kb on + strand, within rpnD at 382.947 kb on - strand, within rpnD at 382.949 kb on + strand, within rpnD at 382.949 kb on + strand, within rpnD at 382.964 kb on - strand, within rpnD at 382.991 kb on - strand, within rpnD at 383.063 kb on - strand, within rpnD at 383.086 kb on + strand, within rpnD at 383.086 kb on + strand, within rpnD at 383.087 kb on - strand, within rpnD at 383.089 kb on - strand, within rpnD at 383.089 kb on - strand, within rpnD at 383.089 kb on - strand, within rpnD at 383.169 kb on + strand, within rpnD at 383.219 kb on + strand, within rpnD at 383.219 kb on + strand, within rpnD at 383.219 kb on + strand, within rpnD at 383.219 kb on + strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.220 kb on - strand, within rpnD at 383.222 kb on - strand, within rpnD at 383.247 kb on + strand, within rpnD at 383.248 kb on - strand, within rpnD at 383.270 kb on - strand, within rpnD at 383.270 kb on - strand, within rpnD at 383.275 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.307 kb on + strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.308 kb on - strand, within rpnD at 383.311 kb on + strand, within rpnD at 383.311 kb on + strand, within rpnD at 383.311 kb on + strand, within rpnD at 383.312 kb on - strand, within rpnD at 383.312 kb on - strand, within rpnD at 383.312 kb on - strand, within rpnD at 383.312 kb on - strand, within rpnD at 383.313 kb on + strand, within rpnD at 383.313 kb on + strand, within rpnD at 383.314 kb on - strand, within rpnD at 383.314 kb on - strand, within rpnD at 383.314 kb on - strand, within rpnD
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 379,960 - gmrSD MCAODC_01955 0.40 -0.2 379,960 - gmrSD MCAODC_01955 0.40 +0.5 380,035 + gmrSD MCAODC_01955 0.48 -0.6 380,149 + gmrSD MCAODC_01955 0.61 +0.2 380,294 - gmrSD MCAODC_01955 0.78 +0.3 380,307 + gmrSD MCAODC_01955 0.79 -0.3 380,307 + gmrSD MCAODC_01955 0.79 +0.3 380,308 - gmrSD MCAODC_01955 0.79 -0.0 380,310 - gmrSD MCAODC_01955 0.80 +1.4 380,310 - gmrSD MCAODC_01955 0.80 +1.2 380,310 - gmrSD MCAODC_01955 0.80 -0.6 380,312 - gmrSD MCAODC_01955 0.80 -1.4 380,312 - gmrSD MCAODC_01955 0.80 -0.4 380,312 - gmrSD MCAODC_01955 0.80 -0.2 380,341 - gmrSD MCAODC_01955 0.83 +1.9 380,341 - gmrSD MCAODC_01955 0.83 -1.1 380,342 + gmrSD MCAODC_01955 0.83 +1.2 380,343 - gmrSD MCAODC_01955 0.83 -1.4 380,410 + +0.8 380,411 - -1.0 380,422 + -0.2 380,432 + -0.4 380,466 + -1.9 380,566 - +1.4 380,580 + +0.8 380,581 - +1.2 380,581 - +1.2 380,581 - +0.4 380,646 + yjiS MCAODC_01960 0.36 -0.0 380,646 + yjiS MCAODC_01960 0.36 +1.2 380,765 + +0.7 380,766 - -1.3 380,806 + -0.3 380,807 - -1.1 380,807 - -0.7 380,819 - +0.3 380,904 - -0.9 380,922 - +0.5 380,955 + +1.8 380,955 + -1.3 380,956 - -1.1 380,956 - +0.3 380,956 - -0.1 380,956 - +0.1 381,021 + -2.1 381,133 + yjiR MCAODC_01965 0.15 -0.9 381,133 + yjiR MCAODC_01965 0.15 -0.3 381,214 + yjiR MCAODC_01965 0.20 -0.0 381,309 + yjiR MCAODC_01965 0.27 +0.4 381,310 - yjiR MCAODC_01965 0.27 -2.8 381,328 + yjiR MCAODC_01965 0.28 -0.1 381,329 - yjiR MCAODC_01965 0.28 +1.9 381,375 + yjiR MCAODC_01965 0.32 +0.8 381,376 - yjiR MCAODC_01965 0.32 +0.3 381,493 + yjiR MCAODC_01965 0.40 -0.3 381,505 + yjiR MCAODC_01965 0.41 +0.5 381,533 + yjiR MCAODC_01965 0.43 -1.0 381,650 - yjiR MCAODC_01965 0.51 +0.3 381,650 - yjiR MCAODC_01965 0.51 +0.4 381,676 + yjiR MCAODC_01965 0.53 -1.6 381,677 - yjiR MCAODC_01965 0.53 -1.6 381,679 + yjiR MCAODC_01965 0.53 -0.8 381,679 + yjiR MCAODC_01965 0.53 +1.0 381,680 - yjiR MCAODC_01965 0.53 +2.0 381,695 - yjiR MCAODC_01965 0.54 -0.1 381,774 - yjiR MCAODC_01965 0.60 -0.8 381,862 + yjiR MCAODC_01965 0.66 +0.1 381,868 + yjiR MCAODC_01965 0.67 -0.1 381,869 - yjiR MCAODC_01965 0.67 -0.9 381,869 - yjiR MCAODC_01965 0.67 -0.4 381,931 + yjiR MCAODC_01965 0.71 -0.7 381,931 + yjiR MCAODC_01965 0.71 +0.9 381,931 + yjiR MCAODC_01965 0.71 +3.7 381,931 + yjiR MCAODC_01965 0.71 -0.1 381,938 + yjiR MCAODC_01965 0.72 +1.1 381,955 + yjiR MCAODC_01965 0.73 +0.4 381,955 + yjiR MCAODC_01965 0.73 -0.4 381,956 - yjiR MCAODC_01965 0.73 -0.0 382,007 + yjiR MCAODC_01965 0.76 +1.3 382,007 + yjiR MCAODC_01965 0.76 -1.0 382,007 + yjiR MCAODC_01965 0.76 -0.3 382,008 - yjiR MCAODC_01965 0.77 -2.3 382,008 - yjiR MCAODC_01965 0.77 -2.3 382,008 - yjiR MCAODC_01965 0.77 +0.4 382,040 + yjiR MCAODC_01965 0.79 +2.0 382,040 + yjiR MCAODC_01965 0.79 -0.0 382,040 + yjiR MCAODC_01965 0.79 -0.7 382,061 + yjiR MCAODC_01965 0.80 -0.1 382,061 + yjiR MCAODC_01965 0.80 -1.2 382,062 - yjiR MCAODC_01965 0.80 +0.4 382,062 - yjiR MCAODC_01965 0.80 +1.2 382,062 - yjiR MCAODC_01965 0.80 +0.3 382,062 - yjiR MCAODC_01965 0.80 -0.3 382,063 + yjiR MCAODC_01965 0.80 -2.8 382,063 + yjiR MCAODC_01965 0.80 +0.8 382,063 + yjiR MCAODC_01965 0.80 +0.3 382,063 + yjiR MCAODC_01965 0.80 -1.0 382,064 - yjiR MCAODC_01965 0.80 -2.1 382,064 - yjiR MCAODC_01965 0.80 +2.5 382,102 + yjiR MCAODC_01965 0.83 +0.1 382,105 + yjiR MCAODC_01965 0.83 -1.3 382,106 - yjiR MCAODC_01965 0.83 +0.7 382,106 - yjiR MCAODC_01965 0.83 -0.1 382,137 + yjiR MCAODC_01965 0.86 +0.7 382,238 + -0.3 382,238 + -0.3 382,239 - +1.7 382,243 + +0.2 382,338 - +1.0 382,343 - -0.2 382,343 - +1.0 382,397 + -0.9 382,397 + +0.0 382,413 + -2.5 382,413 + +0.9 382,414 - -0.2 382,414 - -0.7 382,434 + -0.3 382,601 + +0.3 382,630 + MCAODC_01970 0.24 -0.5 382,631 - MCAODC_01970 0.24 -0.1 382,631 - MCAODC_01970 0.24 -0.6 382,673 - MCAODC_01970 0.45 +0.5 382,759 - -0.5 382,783 + -0.2 382,783 + -0.4 382,809 - +0.6 382,841 + rpnD MCAODC_01975 0.11 +0.3 382,841 + rpnD MCAODC_01975 0.11 +1.7 382,841 + rpnD MCAODC_01975 0.11 +1.3 382,842 - rpnD MCAODC_01975 0.11 -0.6 382,842 - rpnD MCAODC_01975 0.11 +0.1 382,842 - rpnD MCAODC_01975 0.11 -0.3 382,852 + rpnD MCAODC_01975 0.12 -0.6 382,853 - rpnD MCAODC_01975 0.12 -1.5 382,886 + rpnD MCAODC_01975 0.16 -1.1 382,898 + rpnD MCAODC_01975 0.18 +0.4 382,899 - rpnD MCAODC_01975 0.18 -0.5 382,910 + rpnD MCAODC_01975 0.20 -0.9 382,910 + rpnD MCAODC_01975 0.20 +0.7 382,911 - rpnD MCAODC_01975 0.20 +0.9 382,924 + rpnD MCAODC_01975 0.21 -0.5 382,943 + rpnD MCAODC_01975 0.24 +0.6 382,947 - rpnD MCAODC_01975 0.24 -0.2 382,949 + rpnD MCAODC_01975 0.25 +1.4 382,949 + rpnD MCAODC_01975 0.25 +0.3 382,964 - rpnD MCAODC_01975 0.26 +0.5 382,991 - rpnD MCAODC_01975 0.30 +0.3 383,063 - rpnD MCAODC_01975 0.39 -0.1 383,086 + rpnD MCAODC_01975 0.42 +0.5 383,086 + rpnD MCAODC_01975 0.42 +1.7 383,087 - rpnD MCAODC_01975 0.42 +0.9 383,089 - rpnD MCAODC_01975 0.42 +0.4 383,089 - rpnD MCAODC_01975 0.42 -1.1 383,089 - rpnD MCAODC_01975 0.42 +0.4 383,169 + rpnD MCAODC_01975 0.53 +1.7 383,219 + rpnD MCAODC_01975 0.59 +0.9 383,219 + rpnD MCAODC_01975 0.59 -0.3 383,219 + rpnD MCAODC_01975 0.59 -0.1 383,219 + rpnD MCAODC_01975 0.59 +0.5 383,220 - rpnD MCAODC_01975 0.59 -0.4 383,220 - rpnD MCAODC_01975 0.59 -0.4 383,220 - rpnD MCAODC_01975 0.59 -0.6 383,220 - rpnD MCAODC_01975 0.59 -0.5 383,220 - rpnD MCAODC_01975 0.59 -1.1 383,220 - rpnD MCAODC_01975 0.59 -0.5 383,220 - rpnD MCAODC_01975 0.59 -0.2 383,220 - rpnD MCAODC_01975 0.59 -1.5 383,222 - rpnD MCAODC_01975 0.59 +0.5 383,247 + rpnD MCAODC_01975 0.63 +0.7 383,248 - rpnD MCAODC_01975 0.63 -0.2 383,270 - rpnD MCAODC_01975 0.66 +1.7 383,270 - rpnD MCAODC_01975 0.66 +0.3 383,275 + rpnD MCAODC_01975 0.66 -0.2 383,307 + rpnD MCAODC_01975 0.70 +0.1 383,307 + rpnD MCAODC_01975 0.70 -0.4 383,307 + rpnD MCAODC_01975 0.70 +1.7 383,307 + rpnD MCAODC_01975 0.70 -0.7 383,307 + rpnD MCAODC_01975 0.70 -1.4 383,307 + rpnD MCAODC_01975 0.70 +0.4 383,307 + rpnD MCAODC_01975 0.70 +1.5 383,307 + rpnD MCAODC_01975 0.70 -1.4 383,308 - rpnD MCAODC_01975 0.70 +0.3 383,308 - rpnD MCAODC_01975 0.70 +1.1 383,308 - rpnD MCAODC_01975 0.70 +0.9 383,308 - rpnD MCAODC_01975 0.70 +0.1 383,308 - rpnD MCAODC_01975 0.70 -0.4 383,308 - rpnD MCAODC_01975 0.70 -0.3 383,308 - rpnD MCAODC_01975 0.70 -0.1 383,308 - rpnD MCAODC_01975 0.70 +1.4 383,308 - rpnD MCAODC_01975 0.70 -1.4 383,308 - rpnD MCAODC_01975 0.70 -0.2 383,308 - rpnD MCAODC_01975 0.70 +0.5 383,308 - rpnD MCAODC_01975 0.70 -2.2 383,308 - rpnD MCAODC_01975 0.70 +0.7 383,308 - rpnD MCAODC_01975 0.70 +0.1 383,311 + rpnD MCAODC_01975 0.71 +1.2 383,311 + rpnD MCAODC_01975 0.71 -1.3 383,311 + rpnD MCAODC_01975 0.71 -1.2 383,312 - rpnD MCAODC_01975 0.71 +0.3 383,312 - rpnD MCAODC_01975 0.71 +1.0 383,312 - rpnD MCAODC_01975 0.71 +0.8 383,312 - rpnD MCAODC_01975 0.71 +0.5 383,313 + rpnD MCAODC_01975 0.71 +1.6 383,313 + rpnD MCAODC_01975 0.71 +0.9 383,314 - rpnD MCAODC_01975 0.71 +0.3 383,314 - rpnD MCAODC_01975 0.71 +0.2 383,314 - rpnD MCAODC_01975 0.71 +0.8
Or see this region's nucleotide sequence