Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafJ and lpcA are separated by 104 nucleotides lpcA and fadE are separated by 239 nucleotides fadE and ivy are separated by 42 nucleotides ivy and yafV are separated by 180 nucleotides
MCAODC_00290: yafJ - class II glutamine amidotransferase, at 31,533 to 32,300
yafJ
MCAODC_00295: lpcA - D-sedoheptulose 7-phosphate isomerase, at 32,405 to 32,983
lpcA
MCAODC_00300: fadE - acyl-CoA dehydrogenase FadE, at 33,223 to 35,667
fadE
MCAODC_00305: ivy - Ivy family C-type lysozyme inhibitor, at 35,710 to 36,156
ivy
MCAODC_00310: yafV - 2-oxoglutaramate amidase, at 36,337 to 37,107
yafV
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.249 kb on + strand at 32.258 kb on + strand at 32.378 kb on - strand at 32.406 kb on + strand at 32.406 kb on + strand at 32.407 kb on - strand at 32.407 kb on - strand at 32.410 kb on + strand at 32.411 kb on - strand at 32.411 kb on - strand at 32.411 kb on - strand at 32.411 kb on - strand at 32.411 kb on - strand at 32.411 kb on - strand at 32.411 kb on - strand at 33.008 kb on - strand at 33.008 kb on - strand at 33.008 kb on - strand at 33.008 kb on - strand at 33.052 kb on + strand at 33.053 kb on - strand at 33.053 kb on - strand at 33.065 kb on + strand at 33.066 kb on - strand at 33.098 kb on - strand at 33.098 kb on - strand at 33.177 kb on - strand at 33.208 kb on - strand at 33.208 kb on - strand at 33.208 kb on - strand at 33.274 kb on + strand at 33.274 kb on + strand at 33.275 kb on - strand at 33.291 kb on - strand at 33.291 kb on - strand at 33.291 kb on - strand at 33.291 kb on - strand at 33.291 kb on - strand at 33.408 kb on + strand at 33.408 kb on + strand at 33.409 kb on - strand at 33.409 kb on - strand at 33.414 kb on + strand at 33.414 kb on + strand at 33.414 kb on + strand at 33.437 kb on + strand at 33.561 kb on + strand, within fadE at 33.561 kb on + strand, within fadE at 33.561 kb on + strand, within fadE at 33.561 kb on + strand, within fadE at 33.561 kb on + strand, within fadE at 33.561 kb on + strand, within fadE at 33.561 kb on + strand, within fadE at 33.562 kb on - strand, within fadE at 33.562 kb on - strand, within fadE at 33.562 kb on - strand, within fadE at 33.562 kb on - strand, within fadE at 33.562 kb on - strand, within fadE at 33.618 kb on - strand, within fadE at 33.763 kb on + strand, within fadE at 33.763 kb on + strand, within fadE at 33.763 kb on + strand, within fadE at 33.764 kb on - strand, within fadE at 33.895 kb on + strand, within fadE at 34.057 kb on + strand, within fadE at 34.058 kb on - strand, within fadE at 34.063 kb on - strand, within fadE at 34.063 kb on - strand, within fadE at 34.149 kb on + strand, within fadE at 34.149 kb on + strand, within fadE at 34.152 kb on + strand, within fadE at 34.152 kb on + strand, within fadE at 34.152 kb on + strand, within fadE at 34.152 kb on + strand, within fadE at 34.152 kb on + strand, within fadE at 34.152 kb on + strand, within fadE at 34.153 kb on - strand, within fadE at 34.153 kb on - strand, within fadE at 34.447 kb on - strand, within fadE at 34.495 kb on + strand, within fadE at 34.495 kb on + strand, within fadE at 34.499 kb on + strand, within fadE at 34.499 kb on + strand, within fadE at 34.524 kb on + strand, within fadE at 34.524 kb on + strand, within fadE at 34.525 kb on - strand, within fadE at 34.525 kb on - strand, within fadE at 34.528 kb on + strand, within fadE at 34.537 kb on - strand, within fadE at 34.575 kb on + strand, within fadE at 34.575 kb on + strand, within fadE at 34.575 kb on + strand, within fadE at 34.575 kb on + strand, within fadE at 34.576 kb on - strand, within fadE at 34.576 kb on - strand, within fadE at 34.576 kb on - strand, within fadE at 34.576 kb on - strand, within fadE at 34.576 kb on - strand, within fadE at 34.576 kb on - strand, within fadE at 34.576 kb on - strand, within fadE at 34.579 kb on + strand, within fadE at 34.579 kb on + strand, within fadE at 34.579 kb on + strand, within fadE at 34.580 kb on - strand, within fadE at 34.580 kb on - strand, within fadE at 34.580 kb on - strand, within fadE at 34.588 kb on - strand, within fadE at 34.647 kb on + strand, within fadE at 34.647 kb on + strand, within fadE at 34.647 kb on + strand, within fadE at 34.681 kb on + strand, within fadE at 34.682 kb on - strand, within fadE at 34.777 kb on + strand, within fadE at 34.777 kb on + strand, within fadE at 34.777 kb on + strand, within fadE at 34.778 kb on - strand, within fadE at 34.778 kb on - strand, within fadE at 34.848 kb on + strand, within fadE at 34.849 kb on - strand, within fadE at 34.849 kb on - strand, within fadE at 34.945 kb on + strand, within fadE at 34.946 kb on - strand, within fadE at 34.948 kb on + strand, within fadE at 34.949 kb on - strand, within fadE at 34.949 kb on - strand, within fadE at 34.949 kb on - strand, within fadE at 35.040 kb on + strand, within fadE at 35.066 kb on + strand, within fadE at 35.077 kb on + strand, within fadE at 35.078 kb on - strand, within fadE at 35.078 kb on - strand, within fadE at 35.156 kb on + strand, within fadE at 35.170 kb on + strand, within fadE at 35.170 kb on + strand, within fadE at 35.198 kb on + strand, within fadE at 35.269 kb on + strand, within fadE at 35.270 kb on - strand, within fadE at 35.298 kb on + strand, within fadE at 35.343 kb on + strand, within fadE at 35.343 kb on + strand, within fadE at 35.343 kb on + strand, within fadE at 35.344 kb on - strand, within fadE at 35.344 kb on - strand, within fadE at 35.359 kb on + strand, within fadE at 35.360 kb on - strand, within fadE at 35.545 kb on - strand at 35.580 kb on + strand at 35.580 kb on + strand at 35.583 kb on + strand at 35.628 kb on - strand at 35.666 kb on - strand at 35.673 kb on + strand at 35.673 kb on + strand at 35.712 kb on - strand at 35.778 kb on + strand, within ivy at 35.779 kb on - strand, within ivy at 35.875 kb on - strand, within ivy at 35.875 kb on - strand, within ivy at 35.901 kb on + strand, within ivy at 35.948 kb on + strand, within ivy at 35.948 kb on + strand, within ivy at 35.949 kb on - strand, within ivy at 35.969 kb on - strand, within ivy at 35.985 kb on + strand, within ivy at 35.986 kb on - strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.987 kb on + strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 35.988 kb on - strand, within ivy at 36.021 kb on + strand, within ivy at 36.022 kb on - strand, within ivy at 36.042 kb on + strand, within ivy at 36.043 kb on - strand, within ivy at 36.043 kb on - strand, within ivy at 36.088 kb on + strand, within ivy at 36.088 kb on + strand, within ivy at 36.089 kb on - strand, within ivy at 36.172 kb on + strand at 36.187 kb on - strand at 36.187 kb on - strand at 36.187 kb on - strand at 36.190 kb on - strand at 36.197 kb on + strand at 36.257 kb on - strand at 36.291 kb on - strand at 36.320 kb on + strand at 36.331 kb on + strand at 36.331 kb on + strand at 36.332 kb on - strand at 36.332 kb on - strand at 36.429 kb on + strand, within yafV at 36.429 kb on + strand, within yafV at 36.430 kb on - strand, within yafV at 36.430 kb on - strand, within yafV at 36.430 kb on - strand, within yafV at 36.432 kb on + strand, within yafV at 36.468 kb on + strand, within yafV at 36.468 kb on + strand, within yafV at 36.521 kb on + strand, within yafV at 36.521 kb on + strand, within yafV at 36.585 kb on - strand, within yafV at 36.654 kb on + strand, within yafV at 36.655 kb on - strand, within yafV at 36.655 kb on - strand, within yafV
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 32,249 + +0.1 32,258 + -1.4 32,378 - -0.6 32,406 + +1.0 32,406 + +0.9 32,407 - +0.2 32,407 - +0.6 32,410 + -1.2 32,411 - +1.0 32,411 - -0.7 32,411 - +0.4 32,411 - +0.8 32,411 - +0.6 32,411 - -0.5 32,411 - -0.7 33,008 - +0.2 33,008 - -0.9 33,008 - -2.4 33,008 - +0.3 33,052 + -2.7 33,053 - -2.4 33,053 - -1.4 33,065 + -1.1 33,066 - -1.2 33,098 - -1.0 33,098 - -0.3 33,177 - -0.8 33,208 - -0.5 33,208 - -0.2 33,208 - +0.6 33,274 + -1.1 33,274 + +1.5 33,275 - +0.7 33,291 - -0.6 33,291 - -0.0 33,291 - -0.6 33,291 - -1.1 33,291 - +0.0 33,408 + -1.2 33,408 + -0.2 33,409 - -0.7 33,409 - +0.3 33,414 + -1.0 33,414 + +0.5 33,414 + +0.8 33,437 + +1.3 33,561 + fadE MCAODC_00300 0.14 -0.2 33,561 + fadE MCAODC_00300 0.14 +2.0 33,561 + fadE MCAODC_00300 0.14 +0.4 33,561 + fadE MCAODC_00300 0.14 -1.6 33,561 + fadE MCAODC_00300 0.14 +0.0 33,561 + fadE MCAODC_00300 0.14 +0.8 33,561 + fadE MCAODC_00300 0.14 +0.4 33,562 - fadE MCAODC_00300 0.14 -0.4 33,562 - fadE MCAODC_00300 0.14 +0.6 33,562 - fadE MCAODC_00300 0.14 +0.8 33,562 - fadE MCAODC_00300 0.14 -0.4 33,562 - fadE MCAODC_00300 0.14 -2.2 33,618 - fadE MCAODC_00300 0.16 +2.2 33,763 + fadE MCAODC_00300 0.22 +0.8 33,763 + fadE MCAODC_00300 0.22 +0.2 33,763 + fadE MCAODC_00300 0.22 -0.5 33,764 - fadE MCAODC_00300 0.22 -0.9 33,895 + fadE MCAODC_00300 0.27 -0.0 34,057 + fadE MCAODC_00300 0.34 -0.6 34,058 - fadE MCAODC_00300 0.34 -0.6 34,063 - fadE MCAODC_00300 0.34 +0.4 34,063 - fadE MCAODC_00300 0.34 -0.8 34,149 + fadE MCAODC_00300 0.38 -0.1 34,149 + fadE MCAODC_00300 0.38 -0.3 34,152 + fadE MCAODC_00300 0.38 -0.6 34,152 + fadE MCAODC_00300 0.38 -0.5 34,152 + fadE MCAODC_00300 0.38 +0.7 34,152 + fadE MCAODC_00300 0.38 -0.4 34,152 + fadE MCAODC_00300 0.38 +0.7 34,152 + fadE MCAODC_00300 0.38 -0.4 34,153 - fadE MCAODC_00300 0.38 +0.4 34,153 - fadE MCAODC_00300 0.38 +0.0 34,447 - fadE MCAODC_00300 0.50 -1.5 34,495 + fadE MCAODC_00300 0.52 -0.5 34,495 + fadE MCAODC_00300 0.52 -0.2 34,499 + fadE MCAODC_00300 0.52 +0.4 34,499 + fadE MCAODC_00300 0.52 +1.4 34,524 + fadE MCAODC_00300 0.53 -0.3 34,524 + fadE MCAODC_00300 0.53 -0.8 34,525 - fadE MCAODC_00300 0.53 -0.4 34,525 - fadE MCAODC_00300 0.53 -0.6 34,528 + fadE MCAODC_00300 0.53 -0.9 34,537 - fadE MCAODC_00300 0.54 +0.2 34,575 + fadE MCAODC_00300 0.55 +0.3 34,575 + fadE MCAODC_00300 0.55 -0.4 34,575 + fadE MCAODC_00300 0.55 -0.7 34,575 + fadE MCAODC_00300 0.55 +0.4 34,576 - fadE MCAODC_00300 0.55 +1.1 34,576 - fadE MCAODC_00300 0.55 +0.1 34,576 - fadE MCAODC_00300 0.55 +1.4 34,576 - fadE MCAODC_00300 0.55 -1.5 34,576 - fadE MCAODC_00300 0.55 +1.6 34,576 - fadE MCAODC_00300 0.55 +0.4 34,576 - fadE MCAODC_00300 0.55 -1.1 34,579 + fadE MCAODC_00300 0.55 +0.1 34,579 + fadE MCAODC_00300 0.55 +0.2 34,579 + fadE MCAODC_00300 0.55 +0.2 34,580 - fadE MCAODC_00300 0.56 +0.2 34,580 - fadE MCAODC_00300 0.56 -0.1 34,580 - fadE MCAODC_00300 0.56 +0.4 34,588 - fadE MCAODC_00300 0.56 +0.3 34,647 + fadE MCAODC_00300 0.58 -0.2 34,647 + fadE MCAODC_00300 0.58 +1.3 34,647 + fadE MCAODC_00300 0.58 -0.4 34,681 + fadE MCAODC_00300 0.60 -0.1 34,682 - fadE MCAODC_00300 0.60 +1.1 34,777 + fadE MCAODC_00300 0.64 +0.1 34,777 + fadE MCAODC_00300 0.64 -0.1 34,777 + fadE MCAODC_00300 0.64 -0.3 34,778 - fadE MCAODC_00300 0.64 -0.9 34,778 - fadE MCAODC_00300 0.64 +0.5 34,848 + fadE MCAODC_00300 0.66 +0.6 34,849 - fadE MCAODC_00300 0.67 +0.6 34,849 - fadE MCAODC_00300 0.67 -0.4 34,945 + fadE MCAODC_00300 0.70 +0.6 34,946 - fadE MCAODC_00300 0.70 -0.0 34,948 + fadE MCAODC_00300 0.71 +0.5 34,949 - fadE MCAODC_00300 0.71 +0.0 34,949 - fadE MCAODC_00300 0.71 -0.0 34,949 - fadE MCAODC_00300 0.71 -1.1 35,040 + fadE MCAODC_00300 0.74 -1.2 35,066 + fadE MCAODC_00300 0.75 -0.1 35,077 + fadE MCAODC_00300 0.76 +0.0 35,078 - fadE MCAODC_00300 0.76 -1.0 35,078 - fadE MCAODC_00300 0.76 +1.1 35,156 + fadE MCAODC_00300 0.79 -1.6 35,170 + fadE MCAODC_00300 0.80 -0.2 35,170 + fadE MCAODC_00300 0.80 -0.2 35,198 + fadE MCAODC_00300 0.81 -0.2 35,269 + fadE MCAODC_00300 0.84 -0.8 35,270 - fadE MCAODC_00300 0.84 -2.4 35,298 + fadE MCAODC_00300 0.85 +0.1 35,343 + fadE MCAODC_00300 0.87 +1.0 35,343 + fadE MCAODC_00300 0.87 +0.3 35,343 + fadE MCAODC_00300 0.87 -0.9 35,344 - fadE MCAODC_00300 0.87 +0.2 35,344 - fadE MCAODC_00300 0.87 -0.4 35,359 + fadE MCAODC_00300 0.87 +0.6 35,360 - fadE MCAODC_00300 0.87 -0.7 35,545 - -0.7 35,580 + +0.1 35,580 + +0.3 35,583 + -0.3 35,628 - -2.3 35,666 - -0.7 35,673 + +1.0 35,673 + -0.2 35,712 - -1.7 35,778 + ivy MCAODC_00305 0.15 -0.6 35,779 - ivy MCAODC_00305 0.15 -0.3 35,875 - ivy MCAODC_00305 0.37 +0.1 35,875 - ivy MCAODC_00305 0.37 +1.1 35,901 + ivy MCAODC_00305 0.43 +1.4 35,948 + ivy MCAODC_00305 0.53 +0.0 35,948 + ivy MCAODC_00305 0.53 -0.3 35,949 - ivy MCAODC_00305 0.53 -0.4 35,969 - ivy MCAODC_00305 0.58 +0.3 35,985 + ivy MCAODC_00305 0.62 -0.5 35,986 - ivy MCAODC_00305 0.62 +0.1 35,987 + ivy MCAODC_00305 0.62 -0.7 35,987 + ivy MCAODC_00305 0.62 +0.6 35,987 + ivy MCAODC_00305 0.62 +0.6 35,987 + ivy MCAODC_00305 0.62 +0.5 35,987 + ivy MCAODC_00305 0.62 -1.0 35,987 + ivy MCAODC_00305 0.62 +1.2 35,987 + ivy MCAODC_00305 0.62 +0.8 35,987 + ivy MCAODC_00305 0.62 +1.1 35,987 + ivy MCAODC_00305 0.62 -0.5 35,987 + ivy MCAODC_00305 0.62 -0.7 35,988 - ivy MCAODC_00305 0.62 +0.2 35,988 - ivy MCAODC_00305 0.62 -1.1 35,988 - ivy MCAODC_00305 0.62 -0.3 35,988 - ivy MCAODC_00305 0.62 -0.6 35,988 - ivy MCAODC_00305 0.62 -0.5 35,988 - ivy MCAODC_00305 0.62 +0.6 35,988 - ivy MCAODC_00305 0.62 -1.3 35,988 - ivy MCAODC_00305 0.62 -0.3 35,988 - ivy MCAODC_00305 0.62 +0.7 35,988 - ivy MCAODC_00305 0.62 +0.4 35,988 - ivy MCAODC_00305 0.62 -0.3 35,988 - ivy MCAODC_00305 0.62 +0.2 36,021 + ivy MCAODC_00305 0.70 -0.3 36,022 - ivy MCAODC_00305 0.70 +0.9 36,042 + ivy MCAODC_00305 0.74 -1.3 36,043 - ivy MCAODC_00305 0.74 +0.1 36,043 - ivy MCAODC_00305 0.74 +1.4 36,088 + ivy MCAODC_00305 0.85 +0.5 36,088 + ivy MCAODC_00305 0.85 -1.4 36,089 - ivy MCAODC_00305 0.85 -0.0 36,172 + +0.6 36,187 - -0.8 36,187 - -2.0 36,187 - -0.1 36,190 - -0.8 36,197 + -0.6 36,257 - -0.8 36,291 - +0.4 36,320 + -0.5 36,331 + -0.6 36,331 + +0.4 36,332 - -0.7 36,332 - -0.2 36,429 + yafV MCAODC_00310 0.12 -1.3 36,429 + yafV MCAODC_00310 0.12 -0.4 36,430 - yafV MCAODC_00310 0.12 -1.6 36,430 - yafV MCAODC_00310 0.12 +0.8 36,430 - yafV MCAODC_00310 0.12 -0.0 36,432 + yafV MCAODC_00310 0.12 -0.1 36,468 + yafV MCAODC_00310 0.17 +1.1 36,468 + yafV MCAODC_00310 0.17 +0.2 36,521 + yafV MCAODC_00310 0.24 -0.3 36,521 + yafV MCAODC_00310 0.24 -0.6 36,585 - yafV MCAODC_00310 0.32 +0.5 36,654 + yafV MCAODC_00310 0.41 +0.9 36,655 - yafV MCAODC_00310 0.41 -1.6 36,655 - yafV MCAODC_00310 0.41 +1.0
Or see this region's nucleotide sequence