Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12010

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
3,177,305	+		ABI39_RS12005	0.18	+0.7
3,177,335	-		ABI39_RS12005	0.21	-0.4
3,177,457	-		ABI39_RS12005	0.31	+0.9
3,177,479	+		ABI39_RS12005	0.32	+1.4
3,177,481	+		ABI39_RS12005	0.33	+1.5
3,177,482	-		ABI39_RS12005	0.33	-0.3
3,177,483	+		ABI39_RS12005	0.33	+0.9
3,177,484	-		ABI39_RS12005	0.33	+0.2
3,177,580	+		ABI39_RS12005	0.40	+2.6
3,177,580	+		ABI39_RS12005	0.40	+0.0
3,177,581	-		ABI39_RS12005	0.41	+0.1
3,177,602	+		ABI39_RS12005	0.42	-0.2
3,177,616	-		ABI39_RS12005	0.43	+0.2
3,177,691	+		ABI39_RS12005	0.49	+0.3
3,177,720	-		ABI39_RS12005	0.52	-1.5
3,177,746	-		ABI39_RS12005	0.54	-0.6
3,177,761	-		ABI39_RS12005	0.55	+1.1
3,177,780	-		ABI39_RS12005	0.56	-0.3
3,177,805	+		ABI39_RS12005	0.58	+3.5
3,177,806	-		ABI39_RS12005	0.59	-1.3
3,177,839	+		ABI39_RS12005	0.61	+2.1
3,177,916	+		ABI39_RS12005	0.67	+3.2
3,177,947	+		ABI39_RS12005	0.70	-0.2
3,177,964	+		ABI39_RS12005	0.71	+1.6
3,178,052	+		ABI39_RS12005	0.78	+1.2
3,178,057	-		ABI39_RS12005	0.79	-0.8
3,178,100	-		ABI39_RS12005	0.82	+0.1
3,178,101	+		ABI39_RS12005	0.82	+2.4
3,178,101	+		ABI39_RS12005	0.82	+3.3
3,178,102	-		ABI39_RS12005	0.82	-1.1
3,178,302	-				-0.5
3,178,322	+				+2.8
3,178,428	+		ABI39_RS12010	0.12	+1.5
3,178,429	-		ABI39_RS12010	0.12	+0.5
3,178,429	-		ABI39_RS12010	0.12	+0.8
3,178,540	-		ABI39_RS12010	0.22	+0.1
3,178,540	-		ABI39_RS12010	0.22	+0.3
3,178,553	+		ABI39_RS12010	0.23	+1.5
3,178,567	-		ABI39_RS12010	0.25	+0.8
3,178,623	-		ABI39_RS12010	0.30	+0.5
3,178,677	-		ABI39_RS12010	0.35	+0.8
3,178,716	-		ABI39_RS12010	0.38	+2.1
3,178,718	-		ABI39_RS12010	0.38	-0.5
3,178,740	-		ABI39_RS12010	0.40	+0.6
3,178,825	+		ABI39_RS12010	0.48	+1.9
3,178,833	-		ABI39_RS12010	0.49	-1.3
3,178,860	-		ABI39_RS12010	0.51	-1.1
3,179,012	+		ABI39_RS12010	0.65	+2.3
3,179,054	+		ABI39_RS12010	0.69	+2.0
3,179,055	-		ABI39_RS12010	0.69	-0.0
3,179,099	+		ABI39_RS12010	0.73	+2.7
3,179,135	-		ABI39_RS12010	0.76	-0.1
3,179,135	-		ABI39_RS12010	0.76	-0.8
3,179,166	-		ABI39_RS12010	0.79	+0.3
3,179,180	+		ABI39_RS12010	0.81	+6.0
3,179,180	+		ABI39_RS12010	0.81	+3.9
3,179,191	+		ABI39_RS12010	0.82	+2.4
3,179,196	-		ABI39_RS12010	0.82	+0.1
3,179,209	+		ABI39_RS12010	0.83	+3.6
3,179,231	+		ABI39_RS12010	0.85	+1.5
3,179,236	+		ABI39_RS12010	0.86	+4.4
3,179,309	+				+2.5
3,179,357	-				-1.0
3,179,392	-				-1.1
3,179,411	-				+0.9
3,179,417	+				+1.5
3,179,484	+				+0.5
3,179,532	-		ABI39_RS12015	0.15	+0.2
3,179,561	+		ABI39_RS12015	0.18	+3.0
3,179,598	-		ABI39_RS12015	0.22	-2.1
3,179,657	+		ABI39_RS12015	0.28	+2.3
3,179,751	+		ABI39_RS12015	0.38	+3.9
3,179,752	-		ABI39_RS12015	0.38	-0.4
3,179,752	-		ABI39_RS12015	0.38	+0.3
3,179,819	+		ABI39_RS12015	0.45	+1.2
3,179,876	-		ABI39_RS12015	0.52	-0.2
3,179,911	+		ABI39_RS12015	0.55	+1.9
3,179,933	+		ABI39_RS12015	0.58	+3.3
3,179,940	+		ABI39_RS12015	0.58	+2.3
3,179,971	+		ABI39_RS12015	0.62	+3.0
3,180,017	+		ABI39_RS12015	0.67	+3.9
3,180,018	-		ABI39_RS12015	0.67	-0.3
3,180,148	+		ABI39_RS12015	0.81	+3.3
3,180,162	+		ABI39_RS12015	0.82	+3.7
3,180,163	-		ABI39_RS12015	0.82	+0.4
3,180,163	-		ABI39_RS12015	0.82	-0.3
3,180,164	+		ABI39_RS12015	0.82	+3.2
3,180,164	+		ABI39_RS12015	0.82	+3.1
3,180,165	-		ABI39_RS12015	0.83	+0.8
3,180,257	-				+1.0
3,180,260	+				+3.3
3,180,260	+				+2.9
3,180,267	-				+0.2
3,180,325	-				-0.3
3,180,327	+				+2.4
3,180,335	+				+1.2
3,180,344	-				+0.5
3,180,344	-				+0.0
3,180,368	-				+0.0
3,180,388	-				-2.5