Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11110

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
2,970,172	+				+0.3
2,970,173	-				+0.0
2,970,207	+				+0.3
2,970,208	-				+0.1
2,970,213	+				+0.3
2,970,326	-		ABI39_RS11105	0.14	+0.4
2,970,609	+		ABI39_RS11105	0.44	+0.3
2,970,778	+		ABI39_RS11105	0.62	+1.0
2,970,856	+		ABI39_RS11105	0.70	-1.3
2,970,857	-		ABI39_RS11105	0.70	+0.1
2,970,911	+		ABI39_RS11105	0.76	+0.2
2,970,915	+		ABI39_RS11105	0.76	-0.5
2,970,915	+		ABI39_RS11105	0.76	+0.5
2,970,916	-		ABI39_RS11105	0.76	+2.1
2,970,917	+		ABI39_RS11105	0.76	-0.1
2,970,939	-		ABI39_RS11105	0.79	+0.8
2,971,004	-		ABI39_RS11105	0.85	+0.4
2,971,084	-				+1.1
2,971,085	+				+0.5
2,971,105	+				-0.3
2,971,157	-				+0.8
2,971,160	+				+2.5
2,971,160	+				+0.6
2,971,297	-		ABI39_RS11110	0.13	+3.0
2,971,322	+		ABI39_RS11110	0.15	+1.2
2,971,323	-		ABI39_RS11110	0.15	+4.7
2,971,323	-		ABI39_RS11110	0.15	+2.3
2,971,323	-		ABI39_RS11110	0.15	+2.6
2,971,357	+		ABI39_RS11110	0.18	+0.5
2,971,358	-		ABI39_RS11110	0.18	+2.1
2,971,358	-		ABI39_RS11110	0.18	+2.5
2,971,369	-		ABI39_RS11110	0.19	+3.9
2,971,591	+		ABI39_RS11110	0.37	+0.7
2,971,592	-		ABI39_RS11110	0.37	+2.6
2,971,592	-		ABI39_RS11110	0.37	+3.5
2,971,601	-		ABI39_RS11110	0.38	+2.1
2,971,604	+		ABI39_RS11110	0.38	+0.9
2,971,773	+		ABI39_RS11110	0.52	+1.5
2,971,846	+		ABI39_RS11110	0.58	-0.4
2,971,948	+		ABI39_RS11110	0.67	+1.0
2,971,948	+		ABI39_RS11110	0.67	+1.4
2,972,272	+				+0.7
2,972,274	+				+0.3
2,972,362	-				+3.1
2,972,362	-				+3.3
2,972,362	-				+1.9
2,972,365	+				+0.8
2,972,366	-				+1.9
2,972,366	-				+2.0
2,972,378	-				+2.4
2,972,401	-				+1.2
2,972,602	+		ABI39_RS11115	0.22	+0.4
2,972,618	+		ABI39_RS11115	0.24	+0.5
2,972,956	+		ABI39_RS11115	0.54	+0.1
2,972,956	+		ABI39_RS11115	0.54	+1.4
2,973,002	+		ABI39_RS11115	0.58	-1.3
2,973,070	+		ABI39_RS11115	0.64	+1.2
2,973,070	+		ABI39_RS11115	0.64	+1.2
2,973,070	+		ABI39_RS11115	0.64	-0.7
2,973,071	-		ABI39_RS11115	0.64	+3.3
2,973,076	+		ABI39_RS11115	0.65	-0.0
2,973,155	-		ABI39_RS11115	0.72	+1.6
2,973,176	-		ABI39_RS11115	0.74	+1.4
2,973,177	+		ABI39_RS11115	0.74	+0.3
2,973,229	-		ABI39_RS11115	0.79	+2.0
2,973,246	+		ABI39_RS11115	0.80	+0.1
2,973,303	+		ABI39_RS11115	0.85	+0.5