Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04530

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
1,274,847	-		ABI39_RS04520	0.90	-0.4
1,274,856	+				-0.2
1,274,872	-				+0.3
1,274,894	+				-0.0
1,274,920	-				-0.1
1,275,028	+				-0.3
1,275,107	+				+0.7
1,275,109	+				+0.7
1,275,242	-		ABI39_RS04525	0.20	-0.4
1,275,244	+		ABI39_RS04525	0.20	-1.0
1,275,272	-		ABI39_RS04525	0.25	+0.6
1,275,286	+		ABI39_RS04525	0.27	+1.4
1,275,288	+		ABI39_RS04525	0.27	-0.1
1,275,300	+		ABI39_RS04525	0.29	-0.1
1,275,316	+		ABI39_RS04525	0.32	+1.0
1,275,364	+		ABI39_RS04525	0.40	+0.4
1,275,365	-		ABI39_RS04525	0.40	+0.6
1,275,392	-		ABI39_RS04525	0.45	+0.6
1,275,626	+		ABI39_RS04525	0.83	-0.1
1,275,626	+		ABI39_RS04525	0.83	+0.0
1,275,648	-		ABI39_RS04525	0.87	+0.9
1,275,843	-				-0.8
1,275,846	+				-0.0
1,275,846	+				-0.4
1,275,848	+				-0.1
1,275,849	-				+0.5
1,275,850	+				-0.2
1,275,850	+				+0.4
1,275,851	-				+1.0
1,275,851	-				+1.3
1,275,851	-				+0.3
1,275,853	-				-0.5
1,275,894	+				+0.2
1,275,970	+				-0.2
1,275,973	+				+0.0
1,276,064	+		ABI39_RS04530	0.14	-0.5
1,276,163	+		ABI39_RS04530	0.21	-3.1
1,276,164	-		ABI39_RS04530	0.21	+0.0
1,276,273	+		ABI39_RS04530	0.27	-0.2
1,276,274	-		ABI39_RS04530	0.27	-0.2
1,276,347	+		ABI39_RS04530	0.32	-0.3
1,276,410	-		ABI39_RS04530	0.36	+0.0
1,276,410	-		ABI39_RS04530	0.36	-1.3
1,276,411	+		ABI39_RS04530	0.36	+0.2
1,276,412	-		ABI39_RS04530	0.36	-0.6
1,276,504	+		ABI39_RS04530	0.42	-0.4
1,276,531	+		ABI39_RS04530	0.43	-0.3
1,276,621	-		ABI39_RS04530	0.49	-0.4
1,276,634	+		ABI39_RS04530	0.50	+0.2
1,276,646	-		ABI39_RS04530	0.50	+0.9
1,276,666	-		ABI39_RS04530	0.51	-0.4
1,276,698	+		ABI39_RS04530	0.53	-0.6
1,276,699	-		ABI39_RS04530	0.54	+0.1
1,276,729	-		ABI39_RS04530	0.55	-0.4
1,276,742	+		ABI39_RS04530	0.56	+0.3
1,276,847	+		ABI39_RS04530	0.63	-1.8
1,276,847	+		ABI39_RS04530	0.63	+0.9
1,276,847	+		ABI39_RS04530	0.63	-0.3
1,276,856	+		ABI39_RS04530	0.63	+0.2
1,276,856	+		ABI39_RS04530	0.63	-2.0
1,276,875	-		ABI39_RS04530	0.64	+0.8
1,276,875	-		ABI39_RS04530	0.64	-0.8
1,276,889	+		ABI39_RS04530	0.65	-0.6
1,276,978	-		ABI39_RS04530	0.71	-0.8
1,277,025	-		ABI39_RS04530	0.74	+0.6
1,277,121	+		ABI39_RS04530	0.79	+0.1
1,277,693	+				-0.1
1,277,809	+				-0.0
1,277,813	-				-0.7
1,277,905	+				+0.6
1,277,909	-				+0.5
1,277,909	-				-0.4
1,277,911	+				+0.5
1,277,912	-				+0.9
1,278,073	+		ABI39_RS04535	0.13	+0.5
1,278,073	+		ABI39_RS04535	0.13	-0.6
1,278,074	-		ABI39_RS04535	0.13	-0.1
1,278,230	+		ABI39_RS04535	0.18	+0.4
1,278,231	-		ABI39_RS04535	0.18	+0.7
1,278,231	-		ABI39_RS04535	0.18	-0.7
1,278,233	-		ABI39_RS04535	0.18	+1.2
1,278,323	-		ABI39_RS04535	0.21	+0.7
1,278,410	+		ABI39_RS04535	0.23	-0.6
1,278,411	-		ABI39_RS04535	0.23	+2.9
1,278,411	-		ABI39_RS04535	0.23	+0.2
1,278,415	-		ABI39_RS04535	0.24	-0.5