Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03415 and ABI39_RS03420 are separated by 449 nucleotides ABI39_RS03420 and ABI39_RS03425 are separated by 95 nucleotides
ABI39_RS03415: ABI39_RS03415 - RNA polymerase sigma-70 factor, at 983,845 to 984,435
_RS03415
ABI39_RS03420: ABI39_RS03420 - glycosyl hydrolase 43 family protein, at 984,885 to 986,426
_RS03420
ABI39_RS03425: ABI39_RS03425 - alpha-galactosidase, at 986,522 to 988,678
_RS03425
Position (kb) 984
985
986
987 Strain fitness (log2 ratio) -2
-1
0
1 at 983.957 kb on - strand, within ABI39_RS03415 at 984.002 kb on - strand, within ABI39_RS03415 at 984.042 kb on + strand, within ABI39_RS03415 at 984.186 kb on + strand, within ABI39_RS03415 at 984.201 kb on + strand, within ABI39_RS03415 at 984.205 kb on - strand, within ABI39_RS03415 at 984.330 kb on + strand, within ABI39_RS03415 at 984.333 kb on - strand, within ABI39_RS03415 at 984.335 kb on - strand, within ABI39_RS03415 at 984.335 kb on - strand, within ABI39_RS03415 at 984.347 kb on + strand, within ABI39_RS03415 at 984.348 kb on - strand, within ABI39_RS03415 at 984.490 kb on - strand at 984.505 kb on + strand at 984.526 kb on + strand at 984.545 kb on + strand at 984.782 kb on + strand at 984.792 kb on - strand at 984.836 kb on + strand at 984.839 kb on - strand at 984.839 kb on - strand at 984.840 kb on + strand at 984.840 kb on + strand at 984.840 kb on + strand at 984.862 kb on - strand at 984.952 kb on + strand at 984.998 kb on - strand at 985.084 kb on - strand, within ABI39_RS03420 at 985.269 kb on + strand, within ABI39_RS03420 at 985.270 kb on - strand, within ABI39_RS03420 at 985.298 kb on + strand, within ABI39_RS03420 at 985.513 kb on - strand, within ABI39_RS03420 at 985.523 kb on + strand, within ABI39_RS03420 at 985.644 kb on - strand, within ABI39_RS03420 at 985.674 kb on + strand, within ABI39_RS03420 at 985.724 kb on - strand, within ABI39_RS03420 at 985.745 kb on + strand, within ABI39_RS03420 at 985.746 kb on - strand, within ABI39_RS03420 at 985.790 kb on - strand, within ABI39_RS03420 at 985.790 kb on - strand, within ABI39_RS03420 at 985.792 kb on + strand, within ABI39_RS03420 at 985.793 kb on - strand, within ABI39_RS03420 at 985.889 kb on + strand, within ABI39_RS03420 at 985.897 kb on - strand, within ABI39_RS03420 at 985.936 kb on + strand, within ABI39_RS03420 at 985.936 kb on + strand, within ABI39_RS03420 at 985.937 kb on - strand, within ABI39_RS03420 at 985.937 kb on - strand, within ABI39_RS03420 at 985.986 kb on + strand, within ABI39_RS03420 at 986.141 kb on + strand, within ABI39_RS03420 at 986.173 kb on + strand, within ABI39_RS03420 at 986.173 kb on + strand, within ABI39_RS03420 at 986.267 kb on + strand, within ABI39_RS03420 at 986.267 kb on + strand, within ABI39_RS03420 at 986.316 kb on - strand at 986.323 kb on - strand at 986.476 kb on + strand at 986.492 kb on + strand at 986.498 kb on - strand at 986.756 kb on + strand, within ABI39_RS03425 at 986.767 kb on + strand, within ABI39_RS03425 at 986.787 kb on + strand, within ABI39_RS03425 at 986.787 kb on + strand, within ABI39_RS03425 at 986.787 kb on + strand, within ABI39_RS03425 at 986.788 kb on - strand, within ABI39_RS03425 at 986.792 kb on - strand, within ABI39_RS03425 at 986.832 kb on + strand, within ABI39_RS03425 at 986.833 kb on - strand, within ABI39_RS03425 at 986.836 kb on + strand, within ABI39_RS03425 at 986.896 kb on - strand, within ABI39_RS03425 at 987.001 kb on + strand, within ABI39_RS03425 at 987.002 kb on - strand, within ABI39_RS03425 at 987.223 kb on - strand, within ABI39_RS03425 at 987.229 kb on + strand, within ABI39_RS03425 at 987.267 kb on + strand, within ABI39_RS03425 at 987.325 kb on + strand, within ABI39_RS03425 at 987.358 kb on - strand, within ABI39_RS03425 at 987.358 kb on - strand, within ABI39_RS03425 at 987.366 kb on - strand, within ABI39_RS03425 at 987.409 kb on - strand, within ABI39_RS03425
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) remove 983,957 - ABI39_RS03415 0.19 -0.1 984,002 - ABI39_RS03415 0.27 -1.4 984,042 + ABI39_RS03415 0.33 +0.3 984,186 + ABI39_RS03415 0.58 -0.6 984,201 + ABI39_RS03415 0.60 -0.3 984,205 - ABI39_RS03415 0.61 -0.7 984,330 + ABI39_RS03415 0.82 +0.6 984,333 - ABI39_RS03415 0.83 +0.1 984,335 - ABI39_RS03415 0.83 +0.5 984,335 - ABI39_RS03415 0.83 -0.2 984,347 + ABI39_RS03415 0.85 +0.7 984,348 - ABI39_RS03415 0.85 +0.6 984,490 - -1.2 984,505 + +0.4 984,526 + -0.0 984,545 + -0.6 984,782 + +0.4 984,792 - +0.6 984,836 + -0.3 984,839 - -0.4 984,839 - -0.0 984,840 + +0.0 984,840 + +0.9 984,840 + +0.2 984,862 - -0.1 984,952 + +0.3 984,998 - -0.8 985,084 - ABI39_RS03420 0.13 +1.0 985,269 + ABI39_RS03420 0.25 -0.4 985,270 - ABI39_RS03420 0.25 +0.1 985,298 + ABI39_RS03420 0.27 +1.3 985,513 - ABI39_RS03420 0.41 +0.2 985,523 + ABI39_RS03420 0.41 -0.2 985,644 - ABI39_RS03420 0.49 +0.3 985,674 + ABI39_RS03420 0.51 -0.0 985,724 - ABI39_RS03420 0.54 +0.5 985,745 + ABI39_RS03420 0.56 +0.3 985,746 - ABI39_RS03420 0.56 -0.1 985,790 - ABI39_RS03420 0.59 +0.1 985,790 - ABI39_RS03420 0.59 +0.2 985,792 + ABI39_RS03420 0.59 +0.3 985,793 - ABI39_RS03420 0.59 -0.1 985,889 + ABI39_RS03420 0.65 -0.2 985,897 - ABI39_RS03420 0.66 +0.6 985,936 + ABI39_RS03420 0.68 +0.9 985,936 + ABI39_RS03420 0.68 +0.7 985,937 - ABI39_RS03420 0.68 -0.7 985,937 - ABI39_RS03420 0.68 -2.0 985,986 + ABI39_RS03420 0.71 -0.0 986,141 + ABI39_RS03420 0.81 -0.8 986,173 + ABI39_RS03420 0.84 +1.5 986,173 + ABI39_RS03420 0.84 +1.0 986,267 + ABI39_RS03420 0.90 -0.8 986,267 + ABI39_RS03420 0.90 +0.5 986,316 - +0.8 986,323 - +0.2 986,476 + +0.8 986,492 + -0.1 986,498 - -0.4 986,756 + ABI39_RS03425 0.11 -0.1 986,767 + ABI39_RS03425 0.11 -0.2 986,787 + ABI39_RS03425 0.12 +0.7 986,787 + ABI39_RS03425 0.12 +0.4 986,787 + ABI39_RS03425 0.12 +1.2 986,788 - ABI39_RS03425 0.12 +0.4 986,792 - ABI39_RS03425 0.13 +0.6 986,832 + ABI39_RS03425 0.14 -0.4 986,833 - ABI39_RS03425 0.14 -0.1 986,836 + ABI39_RS03425 0.15 +0.6 986,896 - ABI39_RS03425 0.17 +0.3 987,001 + ABI39_RS03425 0.22 +0.2 987,002 - ABI39_RS03425 0.22 -0.6 987,223 - ABI39_RS03425 0.32 +0.1 987,229 + ABI39_RS03425 0.33 +0.4 987,267 + ABI39_RS03425 0.35 -0.3 987,325 + ABI39_RS03425 0.37 +0.1 987,358 - ABI39_RS03425 0.39 +0.9 987,358 - ABI39_RS03425 0.39 +0.4 987,366 - ABI39_RS03425 0.39 -0.8 987,409 - ABI39_RS03425 0.41 +0.9
Or see this region's nucleotide sequence