Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02895

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02890 and ABI39_RS02895 are separated by 318 nucleotidesABI39_RS02895 and ABI39_RS02900 are separated by 21 nucleotidesABI39_RS02900 and ABI39_RS02905 are separated by 100 nucleotides ABI39_RS02890: ABI39_RS02890 - GH92 family glycosyl hydrolase, at 835,200 to 837,392 _RS02890 ABI39_RS02895: ABI39_RS02895 - ATP-binding protein, at 837,711 to 838,841 _RS02895 ABI39_RS02900: ABI39_RS02900 - hypothetical protein, at 838,863 to 839,504 _RS02900 ABI39_RS02905: ABI39_RS02905 - SusD family outer membrane lipoprotein NanU, at 839,605 to 841,194 _RS02905 Position (kb) 837 838 839Strain fitness (log2 ratio) -1 0 1at 837.013 kb on - strand, within ABI39_RS02890at 837.021 kb on - strand, within ABI39_RS02890at 837.192 kb on + strandat 837.305 kb on + strandat 837.305 kb on + strandat 837.359 kb on - strandat 837.379 kb on - strandat 837.420 kb on + strandat 837.420 kb on + strandat 837.421 kb on - strandat 837.542 kb on - strandat 837.557 kb on + strandat 837.644 kb on - strandat 837.646 kb on - strandat 838.385 kb on + strand, within ABI39_RS02895

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
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837,013 - ABI39_RS02890 0.83 -0.7
837,021 - ABI39_RS02890 0.83 -0.6
837,192 + -0.8
837,305 + -0.8
837,305 + +0.2
837,359 - -0.8
837,379 - +1.0
837,420 + -0.7
837,420 + +0.7
837,421 - +0.6
837,542 - -0.2
837,557 + +0.7
837,644 - -0.3
837,646 - +0.3
838,385 + ABI39_RS02895 0.60 -0.5

Or see this region's nucleotide sequence