Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01085 and ABI39_RS01090 are separated by 82 nucleotides ABI39_RS01090 and ABI39_RS01095 are separated by 11 nucleotides ABI39_RS01095 and ABI39_RS01100 are separated by 2 nucleotides
ABI39_RS01085: ABI39_RS01085 - iron-containing alcohol dehydrogenase, at 346,290 to 347,684
_RS01085
ABI39_RS01090: ABI39_RS01090 - FimB/Mfa2 family fimbrial subunit, at 347,767 to 348,717
_RS01090
ABI39_RS01095: ABI39_RS01095 - ABC transporter ATP-binding protein, at 348,729 to 349,388
_RS01095
ABI39_RS01100: ABI39_RS01100 - tRNA threonylcarbamoyladenosine dehydratase, at 349,391 to 350,113
_RS01100
Position (kb) 347
348
349 Strain fitness (log2 ratio) -1
0
1 at 346.796 kb on - strand, within ABI39_RS01085 at 346.878 kb on + strand, within ABI39_RS01085 at 347.004 kb on - strand, within ABI39_RS01085 at 347.098 kb on + strand, within ABI39_RS01085 at 347.099 kb on - strand, within ABI39_RS01085 at 347.099 kb on - strand, within ABI39_RS01085 at 347.182 kb on + strand, within ABI39_RS01085 at 347.213 kb on + strand, within ABI39_RS01085 at 347.281 kb on + strand, within ABI39_RS01085 at 347.288 kb on + strand, within ABI39_RS01085 at 347.483 kb on + strand, within ABI39_RS01085 at 347.571 kb on - strand at 347.592 kb on - strand at 347.680 kb on + strand at 347.681 kb on - strand at 347.725 kb on - strand at 347.765 kb on - strand at 347.804 kb on + strand at 347.876 kb on + strand, within ABI39_RS01090 at 347.876 kb on + strand, within ABI39_RS01090 at 347.898 kb on + strand, within ABI39_RS01090 at 347.912 kb on - strand, within ABI39_RS01090 at 347.930 kb on + strand, within ABI39_RS01090 at 347.959 kb on + strand, within ABI39_RS01090 at 347.972 kb on - strand, within ABI39_RS01090 at 348.073 kb on + strand, within ABI39_RS01090 at 348.073 kb on + strand, within ABI39_RS01090 at 348.079 kb on - strand, within ABI39_RS01090 at 348.117 kb on - strand, within ABI39_RS01090 at 348.177 kb on - strand, within ABI39_RS01090 at 348.201 kb on + strand, within ABI39_RS01090 at 348.209 kb on - strand, within ABI39_RS01090 at 348.350 kb on + strand, within ABI39_RS01090 at 348.357 kb on + strand, within ABI39_RS01090 at 348.368 kb on - strand, within ABI39_RS01090 at 348.382 kb on + strand, within ABI39_RS01090 at 348.632 kb on + strand at 348.727 kb on + strand at 348.756 kb on + strand at 348.757 kb on - strand at 349.447 kb on - strand at 349.610 kb on - strand, within ABI39_RS01100 at 349.670 kb on - strand, within ABI39_RS01100 at 349.703 kb on - strand, within ABI39_RS01100 at 349.707 kb on - strand, within ABI39_RS01100 at 349.707 kb on - strand, within ABI39_RS01100 at 349.709 kb on - strand, within ABI39_RS01100 at 349.709 kb on - strand, within ABI39_RS01100
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) remove 346,796 - ABI39_RS01085 0.36 -1.4 346,878 + ABI39_RS01085 0.42 -1.4 347,004 - ABI39_RS01085 0.51 +1.1 347,098 + ABI39_RS01085 0.58 +0.7 347,099 - ABI39_RS01085 0.58 +0.3 347,099 - ABI39_RS01085 0.58 +0.0 347,182 + ABI39_RS01085 0.64 -0.5 347,213 + ABI39_RS01085 0.66 -0.7 347,281 + ABI39_RS01085 0.71 +0.4 347,288 + ABI39_RS01085 0.72 -0.1 347,483 + ABI39_RS01085 0.86 +0.4 347,571 - -0.3 347,592 - +0.1 347,680 + +0.4 347,681 - -0.3 347,725 - -0.9 347,765 - -0.3 347,804 + +0.2 347,876 + ABI39_RS01090 0.11 -0.8 347,876 + ABI39_RS01090 0.11 -0.7 347,898 + ABI39_RS01090 0.14 -0.5 347,912 - ABI39_RS01090 0.15 +0.8 347,930 + ABI39_RS01090 0.17 -0.7 347,959 + ABI39_RS01090 0.20 -0.3 347,972 - ABI39_RS01090 0.22 +0.1 348,073 + ABI39_RS01090 0.32 +0.3 348,073 + ABI39_RS01090 0.32 -0.3 348,079 - ABI39_RS01090 0.33 -0.4 348,117 - ABI39_RS01090 0.37 -0.3 348,177 - ABI39_RS01090 0.43 +0.0 348,201 + ABI39_RS01090 0.46 +0.6 348,209 - ABI39_RS01090 0.46 -0.4 348,350 + ABI39_RS01090 0.61 -0.7 348,357 + ABI39_RS01090 0.62 -0.1 348,368 - ABI39_RS01090 0.63 -0.3 348,382 + ABI39_RS01090 0.65 -0.5 348,632 + +0.5 348,727 + +1.1 348,756 + -0.8 348,757 - +0.7 349,447 - -0.1 349,610 - ABI39_RS01100 0.30 +0.1 349,670 - ABI39_RS01100 0.39 -0.7 349,703 - ABI39_RS01100 0.43 -0.2 349,707 - ABI39_RS01100 0.44 +1.0 349,707 - ABI39_RS01100 0.44 +0.7 349,709 - ABI39_RS01100 0.44 -0.6 349,709 - ABI39_RS01100 0.44 +0.9
Or see this region's nucleotide sequence