Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cmoM and elyC are separated by 135 nucleotides elyC and ycbJ overlap by 24 nucleotides ycbJ and kdsB are separated by 153 nucleotides kdsB and ycaR overlap by 4 nucleotides
MCAODC_24810: cmoM - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 1,676,748 to 1,677,533
cmoM
MCAODC_24815: elyC - envelope biogenesis factor ElyC, at 1,677,669 to 1,678,448
elyC
MCAODC_24820: ycbJ - Uncharacterized protein YcbJ, at 1,678,425 to 1,679,318
ycbJ
MCAODC_24825: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase, at 1,679,472 to 1,680,218
kdsB
MCAODC_24830: ycaR - protein YcaR, at 1,680,215 to 1,680,397
ycaR
Position (kb)
1678
1679
1680 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1677.482 kb on - strand at 1677.482 kb on - strand at 1677.489 kb on - strand at 1677.619 kb on - strand at 1677.619 kb on - strand at 1677.619 kb on - strand at 1677.619 kb on - strand at 1677.621 kb on + strand at 1677.621 kb on + strand at 1677.622 kb on - strand at 1677.622 kb on - strand at 1677.622 kb on - strand at 1677.641 kb on + strand at 1677.641 kb on + strand at 1677.641 kb on + strand at 1677.641 kb on + strand at 1677.642 kb on - strand at 1677.642 kb on - strand at 1677.642 kb on - strand at 1677.642 kb on - strand at 1677.642 kb on - strand at 1677.642 kb on - strand at 1677.643 kb on + strand at 1677.643 kb on + strand at 1677.643 kb on + strand at 1677.644 kb on - strand at 1677.644 kb on - strand at 1677.677 kb on + strand at 1677.678 kb on - strand at 1677.678 kb on - strand at 1677.701 kb on + strand at 1677.730 kb on + strand at 1677.730 kb on + strand at 1677.731 kb on - strand at 1677.731 kb on - strand at 1677.794 kb on + strand, within elyC at 1677.794 kb on + strand, within elyC at 1677.823 kb on + strand, within elyC at 1677.909 kb on + strand, within elyC at 1677.909 kb on + strand, within elyC at 1677.909 kb on + strand, within elyC at 1677.909 kb on + strand, within elyC at 1677.911 kb on + strand, within elyC at 1677.911 kb on + strand, within elyC at 1677.912 kb on - strand, within elyC at 1677.933 kb on + strand, within elyC at 1677.935 kb on + strand, within elyC at 1677.966 kb on - strand, within elyC at 1678.012 kb on + strand, within elyC at 1678.012 kb on + strand, within elyC at 1678.012 kb on + strand, within elyC at 1678.079 kb on + strand, within elyC at 1678.090 kb on + strand, within elyC at 1678.090 kb on + strand, within elyC at 1678.136 kb on + strand, within elyC at 1678.136 kb on + strand, within elyC at 1678.137 kb on - strand, within elyC at 1678.283 kb on - strand, within elyC at 1678.367 kb on + strand, within elyC at 1678.368 kb on - strand, within elyC at 1678.478 kb on + strand at 1678.490 kb on + strand at 1678.525 kb on + strand, within ycbJ at 1678.525 kb on + strand, within ycbJ at 1678.526 kb on - strand, within ycbJ at 1678.526 kb on - strand, within ycbJ at 1678.526 kb on - strand, within ycbJ at 1678.526 kb on - strand, within ycbJ at 1678.526 kb on - strand, within ycbJ at 1678.576 kb on + strand, within ycbJ at 1678.608 kb on - strand, within ycbJ at 1678.653 kb on + strand, within ycbJ at 1678.654 kb on - strand, within ycbJ at 1678.678 kb on - strand, within ycbJ at 1678.764 kb on + strand, within ycbJ at 1678.764 kb on + strand, within ycbJ at 1678.765 kb on - strand, within ycbJ at 1678.805 kb on + strand, within ycbJ at 1678.830 kb on - strand, within ycbJ at 1678.854 kb on + strand, within ycbJ at 1678.904 kb on + strand, within ycbJ at 1678.904 kb on + strand, within ycbJ at 1678.905 kb on - strand, within ycbJ at 1679.092 kb on + strand, within ycbJ at 1679.105 kb on + strand, within ycbJ at 1679.105 kb on + strand, within ycbJ at 1679.105 kb on + strand, within ycbJ at 1679.105 kb on + strand, within ycbJ at 1679.171 kb on + strand, within ycbJ at 1679.174 kb on + strand, within ycbJ at 1679.218 kb on + strand, within ycbJ at 1679.286 kb on + strand at 1679.286 kb on + strand at 1679.366 kb on + strand at 1679.366 kb on + strand at 1679.367 kb on - strand at 1679.428 kb on + strand at 1679.428 kb on + strand at 1679.428 kb on + strand at 1679.429 kb on - strand at 1679.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 1,677,482 - -1.4 1,677,482 - -1.2 1,677,489 - -0.2 1,677,619 - -2.3 1,677,619 - -0.2 1,677,619 - +1.1 1,677,619 - -1.4 1,677,621 + +0.1 1,677,621 + +1.7 1,677,622 - +0.7 1,677,622 - +2.1 1,677,622 - -0.8 1,677,641 + -0.5 1,677,641 + -0.8 1,677,641 + -1.2 1,677,641 + -0.2 1,677,642 - -0.0 1,677,642 - +1.4 1,677,642 - +0.5 1,677,642 - +0.2 1,677,642 - -0.7 1,677,642 - +1.1 1,677,643 + -1.1 1,677,643 + -0.6 1,677,643 + +1.4 1,677,644 - -0.9 1,677,644 - +0.4 1,677,677 + +0.2 1,677,678 - +2.5 1,677,678 - +0.1 1,677,701 + +1.7 1,677,730 + -0.2 1,677,730 + -3.0 1,677,731 - +0.7 1,677,731 - +0.1 1,677,794 + elyC MCAODC_24815 0.16 +0.2 1,677,794 + elyC MCAODC_24815 0.16 -1.7 1,677,823 + elyC MCAODC_24815 0.20 -0.9 1,677,909 + elyC MCAODC_24815 0.31 +1.1 1,677,909 + elyC MCAODC_24815 0.31 -0.3 1,677,909 + elyC MCAODC_24815 0.31 -1.1 1,677,909 + elyC MCAODC_24815 0.31 -1.7 1,677,911 + elyC MCAODC_24815 0.31 +0.2 1,677,911 + elyC MCAODC_24815 0.31 +0.8 1,677,912 - elyC MCAODC_24815 0.31 -0.5 1,677,933 + elyC MCAODC_24815 0.34 -1.1 1,677,935 + elyC MCAODC_24815 0.34 +0.1 1,677,966 - elyC MCAODC_24815 0.38 +0.7 1,678,012 + elyC MCAODC_24815 0.44 -0.7 1,678,012 + elyC MCAODC_24815 0.44 +1.0 1,678,012 + elyC MCAODC_24815 0.44 +0.7 1,678,079 + elyC MCAODC_24815 0.53 -1.8 1,678,090 + elyC MCAODC_24815 0.54 -0.5 1,678,090 + elyC MCAODC_24815 0.54 -1.0 1,678,136 + elyC MCAODC_24815 0.60 +0.6 1,678,136 + elyC MCAODC_24815 0.60 +1.7 1,678,137 - elyC MCAODC_24815 0.60 +1.9 1,678,283 - elyC MCAODC_24815 0.79 +0.5 1,678,367 + elyC MCAODC_24815 0.89 -0.1 1,678,368 - elyC MCAODC_24815 0.90 +0.2 1,678,478 + +1.1 1,678,490 + +0.9 1,678,525 + ycbJ MCAODC_24820 0.11 +0.5 1,678,525 + ycbJ MCAODC_24820 0.11 -0.2 1,678,526 - ycbJ MCAODC_24820 0.11 +1.3 1,678,526 - ycbJ MCAODC_24820 0.11 +0.7 1,678,526 - ycbJ MCAODC_24820 0.11 -0.4 1,678,526 - ycbJ MCAODC_24820 0.11 -0.2 1,678,526 - ycbJ MCAODC_24820 0.11 -2.0 1,678,576 + ycbJ MCAODC_24820 0.17 +1.5 1,678,608 - ycbJ MCAODC_24820 0.20 +0.9 1,678,653 + ycbJ MCAODC_24820 0.26 -0.2 1,678,654 - ycbJ MCAODC_24820 0.26 -0.4 1,678,678 - ycbJ MCAODC_24820 0.28 -0.4 1,678,764 + ycbJ MCAODC_24820 0.38 -2.4 1,678,764 + ycbJ MCAODC_24820 0.38 +0.4 1,678,765 - ycbJ MCAODC_24820 0.38 +1.2 1,678,805 + ycbJ MCAODC_24820 0.43 -1.5 1,678,830 - ycbJ MCAODC_24820 0.45 +1.0 1,678,854 + ycbJ MCAODC_24820 0.48 +0.1 1,678,904 + ycbJ MCAODC_24820 0.54 +0.3 1,678,904 + ycbJ MCAODC_24820 0.54 -0.2 1,678,905 - ycbJ MCAODC_24820 0.54 -0.3 1,679,092 + ycbJ MCAODC_24820 0.75 -0.0 1,679,105 + ycbJ MCAODC_24820 0.76 +0.3 1,679,105 + ycbJ MCAODC_24820 0.76 +1.6 1,679,105 + ycbJ MCAODC_24820 0.76 +0.7 1,679,105 + ycbJ MCAODC_24820 0.76 +0.3 1,679,171 + ycbJ MCAODC_24820 0.83 -0.2 1,679,174 + ycbJ MCAODC_24820 0.84 +0.9 1,679,218 + ycbJ MCAODC_24820 0.89 +0.1 1,679,286 + +0.1 1,679,286 + +0.0 1,679,366 + +0.7 1,679,366 + -1.2 1,679,367 - -0.5 1,679,428 + -0.9 1,679,428 + -0.1 1,679,428 + +1.1 1,679,429 - +1.7 1,679,473 + -2.2
Or see this region's nucleotide sequence