Strain Fitness in Escherichia coli ECRC101 around MCAODC_22655

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22645 and MCAODC_22650 are separated by 50 nucleotidesMCAODC_22650 and MCAODC_22655 are separated by 4 nucleotidesMCAODC_22655 and MCAODC_22660 are separated by 75 nucleotidesMCAODC_22660 and MCAODC_22665 are separated by 37 nucleotidesMCAODC_22665 and MCAODC_22670 are separated by 147 nucleotides MCAODC_22645: MCAODC_22645 - SAR-endolysin, at 1,284,252 to 1,284,785 _22645 MCAODC_22650: MCAODC_22650 - DUF1327 domain-containing protein, at 1,284,836 to 1,285,180 _22650 MCAODC_22655: MCAODC_22655 - lysis protein, at 1,285,185 to 1,285,400 _22655 MCAODC_22660: MCAODC_22660 - DUF826 domain-containing protein, at 1,285,476 to 1,285,745 _22660 MCAODC_22665: MCAODC_22665 - DUF1378 domain-containing protein, at 1,285,783 to 1,285,965 _22665 MCAODC_22670: MCAODC_22670 - YjhS, at 1,286,113 to 1,287,405 _22670 Position (kb) 1285 1286Strain fitness (log2 ratio) -2 -1 0 1 2at 1285.400 kb on + strandat 1285.477 kb on + strandat 1285.477 kb on + strandat 1285.477 kb on + strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.734 kb on + strandat 1285.871 kb on - strand, within MCAODC_22665at 1285.872 kb on + strand, within MCAODC_22665at 1285.874 kb on + strand, within MCAODC_22665at 1285.890 kb on + strand, within MCAODC_22665at 1285.891 kb on - strand, within MCAODC_22665at 1285.913 kb on - strand, within MCAODC_22665at 1285.913 kb on - strand, within MCAODC_22665at 1285.937 kb on + strand, within MCAODC_22665at 1285.985 kb on + strandat 1286.005 kb on + strandat 1286.006 kb on - strandat 1286.047 kb on + strandat 1286.048 kb on - strandat 1286.048 kb on - strandat 1286.049 kb on + strandat 1286.049 kb on + strandat 1286.049 kb on + strandat 1286.115 kb on - strandat 1286.137 kb on + strandat 1286.138 kb on - strandat 1286.140 kb on - strandat 1286.254 kb on - strand, within MCAODC_22670at 1286.281 kb on - strand, within MCAODC_22670at 1286.314 kb on - strand, within MCAODC_22670at 1286.382 kb on - strand, within MCAODC_22670

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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1,285,400 + +1.8
1,285,477 + +0.1
1,285,477 + -0.6
1,285,477 + +1.0
1,285,478 - -0.7
1,285,478 - +0.7
1,285,478 - +0.2
1,285,478 - +0.5
1,285,478 - +1.4
1,285,478 - -1.1
1,285,734 + +0.7
1,285,871 - MCAODC_22665 0.48 -2.0
1,285,872 + MCAODC_22665 0.49 -0.6
1,285,874 + MCAODC_22665 0.50 -1.2
1,285,890 + MCAODC_22665 0.58 +1.1
1,285,891 - MCAODC_22665 0.59 +0.8
1,285,913 - MCAODC_22665 0.71 -0.3
1,285,913 - MCAODC_22665 0.71 -0.6
1,285,937 + MCAODC_22665 0.84 +2.1
1,285,985 + +1.0
1,286,005 + -2.0
1,286,006 - -0.8
1,286,047 + -1.0
1,286,048 - -0.2
1,286,048 - +1.2
1,286,049 + -1.4
1,286,049 + +2.5
1,286,049 + +0.2
1,286,115 - +1.8
1,286,137 + +1.5
1,286,138 - +1.1
1,286,140 - -0.0
1,286,254 - MCAODC_22670 0.11 +0.2
1,286,281 - MCAODC_22670 0.13 +1.0
1,286,314 - MCAODC_22670 0.16 +1.3
1,286,382 - MCAODC_22670 0.21 -0.4

Or see this region's nucleotide sequence