Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_22630 and MCAODC_22635 are separated by 7 nucleotides MCAODC_22635 and MCAODC_22640 overlap by 1 nucleotides MCAODC_22640 and MCAODC_22645 are separated by 270 nucleotides MCAODC_22645 and MCAODC_22650 are separated by 50 nucleotides MCAODC_22650 and MCAODC_22655 are separated by 4 nucleotides MCAODC_22655 and MCAODC_22660 are separated by 75 nucleotides MCAODC_22660 and MCAODC_22665 are separated by 37 nucleotides
MCAODC_22630: MCAODC_22630 - lysis protein, at 1,282,791 to 1,283,258
_22630
MCAODC_22635: MCAODC_22635 - hypothetical protein, at 1,283,266 to 1,283,412
_22635
MCAODC_22640: MCAODC_22640 - Phage antirepressor protein, at 1,283,412 to 1,283,981
_22640
MCAODC_22645: MCAODC_22645 - SAR-endolysin, at 1,284,252 to 1,284,785
_22645
MCAODC_22650: MCAODC_22650 - DUF1327 domain-containing protein, at 1,284,836 to 1,285,180
_22650
MCAODC_22655: MCAODC_22655 - lysis protein, at 1,285,185 to 1,285,400
_22655
MCAODC_22660: MCAODC_22660 - DUF826 domain-containing protein, at 1,285,476 to 1,285,745
_22660
MCAODC_22665: MCAODC_22665 - DUF1378 domain-containing protein, at 1,285,783 to 1,285,965
_22665
Position (kb)
1284
1285 Strain fitness (log2 ratio)
-1
0
1
2 at 1285.400 kb on + strand at 1285.477 kb on + strand at 1285.477 kb on + strand at 1285.477 kb on + strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 1,285,400 + +1.8 1,285,477 + +0.1 1,285,477 + -0.6 1,285,477 + +1.0 1,285,478 - -0.7 1,285,478 - +0.7 1,285,478 - +0.2 1,285,478 - +0.5 1,285,478 - +1.4 1,285,478 - -1.1 1,285,734 + +0.7
Or see this region's nucleotide sequence