Strain Fitness in Escherichia coli ECRC101 around MCAODC_22645

Experiment: WM_Bas41

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_22630 and MCAODC_22635 are separated by 7 nucleotidesMCAODC_22635 and MCAODC_22640 overlap by 1 nucleotidesMCAODC_22640 and MCAODC_22645 are separated by 270 nucleotidesMCAODC_22645 and MCAODC_22650 are separated by 50 nucleotidesMCAODC_22650 and MCAODC_22655 are separated by 4 nucleotidesMCAODC_22655 and MCAODC_22660 are separated by 75 nucleotidesMCAODC_22660 and MCAODC_22665 are separated by 37 nucleotides MCAODC_22630: MCAODC_22630 - lysis protein, at 1,282,791 to 1,283,258 _22630 MCAODC_22635: MCAODC_22635 - hypothetical protein, at 1,283,266 to 1,283,412 _22635 MCAODC_22640: MCAODC_22640 - Phage antirepressor protein, at 1,283,412 to 1,283,981 _22640 MCAODC_22645: MCAODC_22645 - SAR-endolysin, at 1,284,252 to 1,284,785 _22645 MCAODC_22650: MCAODC_22650 - DUF1327 domain-containing protein, at 1,284,836 to 1,285,180 _22650 MCAODC_22655: MCAODC_22655 - lysis protein, at 1,285,185 to 1,285,400 _22655 MCAODC_22660: MCAODC_22660 - DUF826 domain-containing protein, at 1,285,476 to 1,285,745 _22660 MCAODC_22665: MCAODC_22665 - DUF1378 domain-containing protein, at 1,285,783 to 1,285,965 _22665 Position (kb) 1284 1285Strain fitness (log2 ratio) -1 0 1 2at 1285.400 kb on + strandat 1285.477 kb on + strandat 1285.477 kb on + strandat 1285.477 kb on + strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.734 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
remove
1,285,400 + +1.8
1,285,477 + +0.1
1,285,477 + -0.6
1,285,477 + +1.0
1,285,478 - -0.7
1,285,478 - +0.7
1,285,478 - +0.2
1,285,478 - +0.5
1,285,478 - +1.4
1,285,478 - -1.1
1,285,734 + +0.7

Or see this region's nucleotide sequence