Strain Fitness in Escherichia coli ECRC101 around MCAODC_21510

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteCs1768 and MCAODC_21510 overlap by 29 nucleotidesMCAODC_21510 and MCAODC_21515 overlap by 17 nucleotidesMCAODC_21515 and hipB are separated by 76 nucleotideshipB and MCAODC_21525 are separated by 263 nucleotides MCAODC_21505: eCs1768 - DNA-binding protein, at 1,089,632 to 1,090,672 eCs1768 MCAODC_21510: MCAODC_21510 - Putative bacterial toxin ydaT, at 1,090,644 to 1,091,195 _21510 MCAODC_21515: MCAODC_21515 - transcriptional regulator, at 1,091,179 to 1,091,406 _21515 MCAODC_21520: hipB - transcriptional regulator, at 1,091,483 to 1,091,890 hipB MCAODC_21525: MCAODC_21525 - hypothetical protein, at 1,092,154 to 1,092,453 _21525 Position (kb) 1090 1091 1092Strain fitness (log2 ratio) -2 -1 0 1 2at 1089.890 kb on + strand, within eCs1768at 1089.891 kb on - strand, within eCs1768at 1089.891 kb on - strand, within eCs1768at 1089.955 kb on - strand, within eCs1768at 1089.986 kb on - strand, within eCs1768at 1090.107 kb on - strand, within eCs1768at 1090.172 kb on - strand, within eCs1768at 1090.185 kb on - strand, within eCs1768at 1090.409 kb on + strand, within eCs1768at 1090.554 kb on - strand, within eCs1768at 1090.554 kb on - strand, within eCs1768at 1090.588 kb on + strandat 1090.589 kb on - strandat 1090.589 kb on - strandat 1090.656 kb on - strandat 1090.709 kb on - strand, within MCAODC_21510at 1090.709 kb on - strand, within MCAODC_21510at 1090.712 kb on - strand, within MCAODC_21510at 1090.718 kb on - strand, within MCAODC_21510at 1090.748 kb on + strand, within MCAODC_21510at 1090.962 kb on - strand, within MCAODC_21510at 1090.996 kb on - strand, within MCAODC_21510at 1091.252 kb on + strand, within MCAODC_21515at 1091.388 kb on + strandat 1091.388 kb on + strandat 1091.940 kb on + strandat 1092.163 kb on + strandat 1092.163 kb on + strandat 1092.164 kb on - strandat 1092.166 kb on - strandat 1092.195 kb on - strand, within MCAODC_21525at 1092.195 kb on - strand, within MCAODC_21525

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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1,089,890 + eCs1768 MCAODC_21505 0.25 +0.4
1,089,891 - eCs1768 MCAODC_21505 0.25 -1.3
1,089,891 - eCs1768 MCAODC_21505 0.25 +0.0
1,089,955 - eCs1768 MCAODC_21505 0.31 +0.3
1,089,986 - eCs1768 MCAODC_21505 0.34 +0.6
1,090,107 - eCs1768 MCAODC_21505 0.46 +2.4
1,090,172 - eCs1768 MCAODC_21505 0.52 -0.8
1,090,185 - eCs1768 MCAODC_21505 0.53 +1.7
1,090,409 + eCs1768 MCAODC_21505 0.75 +1.9
1,090,554 - eCs1768 MCAODC_21505 0.89 -0.8
1,090,554 - eCs1768 MCAODC_21505 0.89 -0.3
1,090,588 + -0.7
1,090,589 - +0.0
1,090,589 - -0.3
1,090,656 - +0.3
1,090,709 - MCAODC_21510 0.12 -0.4
1,090,709 - MCAODC_21510 0.12 -0.3
1,090,712 - MCAODC_21510 0.12 +0.2
1,090,718 - MCAODC_21510 0.13 +1.0
1,090,748 + MCAODC_21510 0.19 +0.9
1,090,962 - MCAODC_21510 0.58 +1.4
1,090,996 - MCAODC_21510 0.64 +0.4
1,091,252 + MCAODC_21515 0.32 -0.6
1,091,388 + +0.3
1,091,388 + -0.2
1,091,940 + -2.0
1,092,163 + -1.0
1,092,163 + -0.4
1,092,164 - +0.8
1,092,166 - +1.2
1,092,195 - MCAODC_21525 0.14 +0.0
1,092,195 - MCAODC_21525 0.14 -0.4

Or see this region's nucleotide sequence