Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gmm and fcl overlap by 1 nucleotides fcl and MCAODC_20595 are separated by 2 nucleotides MCAODC_20595 and wcaF are separated by 28 nucleotides wcaF and wcaE are separated by 15 nucleotides
MCAODC_20585: gmm - GDP-mannose mannosyl hydrolase, at 929,005 to 929,487
gmm
MCAODC_20590: fcl - GDP-L-fucose synthase, at 929,487 to 930,452
fcl
MCAODC_20595: MCAODC_20595 - GDP-mannose 4,6-dehydratase, at 930,455 to 931,576
_20595
MCAODC_20600: wcaF - colanic acid biosynthesis acetyltransferase WcaF, at 931,605 to 932,153
wcaF
MCAODC_20605: wcaE - colanic acid biosynthesis glycosyltransferase WcaE, at 932,169 to 932,915
wcaE
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 929.527 kb on + strand at 929.527 kb on + strand at 929.528 kb on - strand at 929.657 kb on - strand, within fcl at 929.723 kb on + strand, within fcl at 929.804 kb on + strand, within fcl at 929.925 kb on - strand, within fcl at 929.954 kb on - strand, within fcl at 929.954 kb on - strand, within fcl at 929.981 kb on - strand, within fcl at 930.004 kb on + strand, within fcl at 930.081 kb on + strand, within fcl at 930.081 kb on + strand, within fcl at 930.211 kb on + strand, within fcl at 930.211 kb on + strand, within fcl at 930.229 kb on + strand, within fcl at 930.274 kb on + strand, within fcl at 930.287 kb on + strand, within fcl at 930.355 kb on - strand, within fcl at 930.357 kb on + strand at 930.358 kb on - strand at 930.447 kb on - strand at 930.453 kb on - strand at 930.453 kb on - strand at 930.453 kb on - strand at 930.453 kb on - strand at 930.456 kb on + strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.645 kb on + strand, within MCAODC_20595 at 930.646 kb on - strand, within MCAODC_20595 at 930.683 kb on - strand, within MCAODC_20595 at 930.789 kb on - strand, within MCAODC_20595 at 930.801 kb on - strand, within MCAODC_20595 at 930.801 kb on - strand, within MCAODC_20595 at 930.875 kb on + strand, within MCAODC_20595 at 930.876 kb on - strand, within MCAODC_20595 at 930.879 kb on + strand, within MCAODC_20595 at 930.880 kb on - strand, within MCAODC_20595 at 930.880 kb on - strand, within MCAODC_20595 at 930.917 kb on - strand, within MCAODC_20595 at 930.928 kb on - strand, within MCAODC_20595 at 931.031 kb on - strand, within MCAODC_20595 at 931.044 kb on + strand, within MCAODC_20595 at 931.044 kb on + strand, within MCAODC_20595 at 931.044 kb on + strand, within MCAODC_20595 at 931.044 kb on + strand, within MCAODC_20595 at 931.044 kb on + strand, within MCAODC_20595 at 931.044 kb on + strand, within MCAODC_20595 at 931.045 kb on - strand, within MCAODC_20595 at 931.045 kb on - strand, within MCAODC_20595 at 931.045 kb on - strand, within MCAODC_20595 at 931.089 kb on + strand, within MCAODC_20595 at 931.090 kb on - strand, within MCAODC_20595 at 931.090 kb on - strand, within MCAODC_20595 at 931.167 kb on + strand, within MCAODC_20595 at 931.168 kb on - strand, within MCAODC_20595 at 931.168 kb on - strand, within MCAODC_20595 at 931.191 kb on + strand, within MCAODC_20595 at 931.273 kb on + strand, within MCAODC_20595 at 931.273 kb on + strand, within MCAODC_20595 at 931.326 kb on + strand, within MCAODC_20595 at 931.327 kb on - strand, within MCAODC_20595 at 931.327 kb on - strand, within MCAODC_20595 at 931.327 kb on - strand, within MCAODC_20595 at 931.358 kb on - strand, within MCAODC_20595 at 931.393 kb on - strand, within MCAODC_20595 at 931.435 kb on - strand, within MCAODC_20595 at 931.480 kb on + strand at 931.481 kb on - strand at 931.680 kb on - strand, within wcaF at 931.782 kb on - strand, within wcaF at 931.782 kb on - strand, within wcaF at 931.782 kb on - strand, within wcaF at 931.837 kb on - strand, within wcaF at 931.896 kb on + strand, within wcaF at 931.897 kb on - strand, within wcaF at 931.933 kb on - strand, within wcaF at 932.041 kb on - strand, within wcaF at 932.097 kb on - strand, within wcaF at 932.100 kb on - strand at 932.207 kb on + strand at 932.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 929,527 + -1.2 929,527 + -0.2 929,528 - -0.4 929,657 - fcl MCAODC_20590 0.18 +0.6 929,723 + fcl MCAODC_20590 0.24 +0.2 929,804 + fcl MCAODC_20590 0.33 -0.2 929,925 - fcl MCAODC_20590 0.45 -0.8 929,954 - fcl MCAODC_20590 0.48 +1.2 929,954 - fcl MCAODC_20590 0.48 -0.8 929,981 - fcl MCAODC_20590 0.51 +0.6 930,004 + fcl MCAODC_20590 0.54 -1.4 930,081 + fcl MCAODC_20590 0.61 -0.7 930,081 + fcl MCAODC_20590 0.61 -0.2 930,211 + fcl MCAODC_20590 0.75 +1.0 930,211 + fcl MCAODC_20590 0.75 -0.9 930,229 + fcl MCAODC_20590 0.77 +0.3 930,274 + fcl MCAODC_20590 0.81 -2.8 930,287 + fcl MCAODC_20590 0.83 +0.4 930,355 - fcl MCAODC_20590 0.90 +1.0 930,357 + +1.1 930,358 - -0.0 930,447 - +0.3 930,453 - -0.4 930,453 - +0.9 930,453 - +1.4 930,453 - +1.0 930,456 + -1.0 930,457 - +1.4 930,457 - +0.1 930,457 - -1.8 930,457 - +0.5 930,457 - -0.1 930,457 - +0.5 930,645 + MCAODC_20595 0.17 +1.3 930,646 - MCAODC_20595 0.17 +0.1 930,683 - MCAODC_20595 0.20 -0.8 930,789 - MCAODC_20595 0.30 +1.8 930,801 - MCAODC_20595 0.31 +0.3 930,801 - MCAODC_20595 0.31 -0.9 930,875 + MCAODC_20595 0.37 -0.6 930,876 - MCAODC_20595 0.38 +0.3 930,879 + MCAODC_20595 0.38 +0.2 930,880 - MCAODC_20595 0.38 -0.9 930,880 - MCAODC_20595 0.38 +0.9 930,917 - MCAODC_20595 0.41 +0.2 930,928 - MCAODC_20595 0.42 +1.1 931,031 - MCAODC_20595 0.51 +3.4 931,044 + MCAODC_20595 0.52 +0.9 931,044 + MCAODC_20595 0.52 +1.1 931,044 + MCAODC_20595 0.52 -0.3 931,044 + MCAODC_20595 0.52 -0.2 931,044 + MCAODC_20595 0.52 +0.3 931,044 + MCAODC_20595 0.52 +0.5 931,045 - MCAODC_20595 0.53 -0.8 931,045 - MCAODC_20595 0.53 +0.8 931,045 - MCAODC_20595 0.53 +1.4 931,089 + MCAODC_20595 0.57 -1.1 931,090 - MCAODC_20595 0.57 -0.9 931,090 - MCAODC_20595 0.57 +0.0 931,167 + MCAODC_20595 0.63 -1.0 931,168 - MCAODC_20595 0.64 +0.8 931,168 - MCAODC_20595 0.64 -0.4 931,191 + MCAODC_20595 0.66 -1.2 931,273 + MCAODC_20595 0.73 +0.6 931,273 + MCAODC_20595 0.73 -1.7 931,326 + MCAODC_20595 0.78 +0.9 931,327 - MCAODC_20595 0.78 -0.8 931,327 - MCAODC_20595 0.78 -1.0 931,327 - MCAODC_20595 0.78 +0.6 931,358 - MCAODC_20595 0.80 -0.7 931,393 - MCAODC_20595 0.84 +0.6 931,435 - MCAODC_20595 0.87 -1.1 931,480 + -0.9 931,481 - +1.4 931,680 - wcaF MCAODC_20600 0.14 -0.6 931,782 - wcaF MCAODC_20600 0.32 -0.5 931,782 - wcaF MCAODC_20600 0.32 -2.0 931,782 - wcaF MCAODC_20600 0.32 +0.9 931,837 - wcaF MCAODC_20600 0.42 -1.6 931,896 + wcaF MCAODC_20600 0.53 +0.6 931,897 - wcaF MCAODC_20600 0.53 -0.8 931,933 - wcaF MCAODC_20600 0.60 +0.6 932,041 - wcaF MCAODC_20600 0.79 -0.8 932,097 - wcaF MCAODC_20600 0.90 +0.7 932,100 - +0.7 932,207 + +1.4 932,208 - +1.0
Or see this region's nucleotide sequence