Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedQ and yodC are separated by 170 nucleotides yodC and yedI are separated by 78 nucleotides yedI and yedA are separated by 172 nucleotides
MCAODC_19770: yedQ - cellulose biosynthesis regulator YedQ, at 780,078 to 781,772
yedQ
MCAODC_19775: yodC - Uncharacterized protein YodC, at 781,943 to 782,125
yodC
MCAODC_19780: yedI - Inner membrane protein YedI, at 782,204 to 783,121
yedI
MCAODC_19785: yedA - drug/metabolite exporter YedA, at 783,294 to 784,214
yedA
Position (kb) 782
783
784 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 781.246 kb on + strand, within yedQ at 781.246 kb on + strand, within yedQ at 781.246 kb on + strand, within yedQ at 781.246 kb on + strand, within yedQ at 781.247 kb on - strand, within yedQ at 781.247 kb on - strand, within yedQ at 781.261 kb on - strand, within yedQ at 781.554 kb on - strand, within yedQ at 781.555 kb on + strand, within yedQ at 781.601 kb on + strand, within yedQ at 781.617 kb on - strand at 781.618 kb on + strand at 781.619 kb on - strand at 781.619 kb on - strand at 781.638 kb on + strand at 781.638 kb on + strand at 781.701 kb on - strand at 781.850 kb on - strand at 781.851 kb on + strand at 781.851 kb on + strand at 781.852 kb on - strand at 781.865 kb on + strand at 781.865 kb on + strand at 781.865 kb on + strand at 781.877 kb on - strand at 781.931 kb on - strand at 781.931 kb on - strand at 781.931 kb on - strand at 781.937 kb on - strand at 782.019 kb on + strand, within yodC at 782.059 kb on - strand, within yodC at 782.093 kb on - strand, within yodC at 782.126 kb on - strand at 782.162 kb on + strand at 782.186 kb on + strand at 782.186 kb on + strand at 782.190 kb on - strand at 782.190 kb on - strand at 782.190 kb on - strand at 782.190 kb on - strand at 782.203 kb on - strand at 782.203 kb on - strand at 782.203 kb on - strand at 782.205 kb on + strand at 782.205 kb on + strand at 782.206 kb on - strand at 782.289 kb on - strand at 782.301 kb on - strand, within yedI at 782.301 kb on - strand, within yedI at 782.304 kb on - strand, within yedI at 782.369 kb on - strand, within yedI at 782.375 kb on + strand, within yedI at 782.376 kb on - strand, within yedI at 782.468 kb on - strand, within yedI at 782.471 kb on + strand, within yedI at 782.472 kb on - strand, within yedI at 782.531 kb on - strand, within yedI at 782.531 kb on - strand, within yedI at 782.544 kb on - strand, within yedI at 782.554 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.690 kb on + strand, within yedI at 782.770 kb on + strand, within yedI at 782.770 kb on + strand, within yedI at 782.771 kb on - strand, within yedI at 782.791 kb on + strand, within yedI at 782.792 kb on - strand, within yedI at 782.792 kb on - strand, within yedI at 782.808 kb on - strand, within yedI at 782.912 kb on - strand, within yedI at 782.915 kb on - strand, within yedI at 782.999 kb on + strand, within yedI at 782.999 kb on + strand, within yedI at 783.000 kb on - strand, within yedI at 783.011 kb on + strand, within yedI at 783.014 kb on + strand, within yedI at 783.015 kb on - strand, within yedI at 783.150 kb on + strand at 783.151 kb on - strand at 783.154 kb on + strand at 783.154 kb on + strand at 783.179 kb on + strand at 783.223 kb on + strand at 783.224 kb on - strand at 783.224 kb on - strand at 783.224 kb on - strand at 783.256 kb on + strand at 783.259 kb on + strand at 783.259 kb on + strand at 783.259 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.343 kb on - strand at 783.343 kb on - strand at 783.345 kb on - strand at 783.460 kb on + strand, within yedA at 783.621 kb on - strand, within yedA at 783.774 kb on - strand, within yedA at 783.809 kb on + strand, within yedA at 783.810 kb on - strand, within yedA at 783.810 kb on - strand, within yedA at 783.814 kb on + strand, within yedA at 783.815 kb on - strand, within yedA at 783.821 kb on - strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.982 kb on - strand, within yedA at 783.982 kb on - strand, within yedA at 783.983 kb on + strand, within yedA at 783.983 kb on + strand, within yedA at 783.983 kb on + strand, within yedA at 783.984 kb on - strand, within yedA at 783.987 kb on + strand, within yedA at 783.987 kb on + strand, within yedA at 783.987 kb on + strand, within yedA at 783.987 kb on + strand, within yedA at 783.991 kb on + strand, within yedA at 784.026 kb on + strand, within yedA at 784.026 kb on + strand, within yedA at 784.032 kb on + strand, within yedA at 784.032 kb on + strand, within yedA at 784.033 kb on - strand, within yedA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 781,246 + yedQ MCAODC_19770 0.69 +1.2 781,246 + yedQ MCAODC_19770 0.69 +2.0 781,246 + yedQ MCAODC_19770 0.69 +0.5 781,246 + yedQ MCAODC_19770 0.69 -1.0 781,247 - yedQ MCAODC_19770 0.69 +0.4 781,247 - yedQ MCAODC_19770 0.69 +0.4 781,261 - yedQ MCAODC_19770 0.70 +1.1 781,554 - yedQ MCAODC_19770 0.87 -0.7 781,555 + yedQ MCAODC_19770 0.87 -1.4 781,601 + yedQ MCAODC_19770 0.90 +2.0 781,617 - +1.8 781,618 + -0.6 781,619 - -1.4 781,619 - +0.9 781,638 + -0.4 781,638 + +0.0 781,701 - +0.9 781,850 - -1.2 781,851 + -0.2 781,851 + +0.7 781,852 - -0.2 781,865 + +0.4 781,865 + +1.9 781,865 + +0.0 781,877 - +1.4 781,931 - -0.1 781,931 - -0.7 781,931 - -0.9 781,937 - +0.0 782,019 + yodC MCAODC_19775 0.42 -0.4 782,059 - yodC MCAODC_19775 0.63 +0.1 782,093 - yodC MCAODC_19775 0.82 +2.0 782,126 - +0.7 782,162 + -0.5 782,186 + +2.2 782,186 + -1.9 782,190 - -0.3 782,190 - -0.3 782,190 - -0.2 782,190 - -0.9 782,203 - -0.1 782,203 - +0.4 782,203 - +0.1 782,205 + +0.0 782,205 + +3.4 782,206 - +0.0 782,289 - +0.8 782,301 - yedI MCAODC_19780 0.11 +1.3 782,301 - yedI MCAODC_19780 0.11 +1.2 782,304 - yedI MCAODC_19780 0.11 +0.7 782,369 - yedI MCAODC_19780 0.18 -2.3 782,375 + yedI MCAODC_19780 0.19 -2.0 782,376 - yedI MCAODC_19780 0.19 -0.4 782,468 - yedI MCAODC_19780 0.29 +0.6 782,471 + yedI MCAODC_19780 0.29 +0.9 782,472 - yedI MCAODC_19780 0.29 -0.4 782,531 - yedI MCAODC_19780 0.36 +0.8 782,531 - yedI MCAODC_19780 0.36 -0.3 782,544 - yedI MCAODC_19780 0.37 -0.1 782,554 - yedI MCAODC_19780 0.38 -0.6 782,666 - yedI MCAODC_19780 0.50 -1.2 782,666 - yedI MCAODC_19780 0.50 -2.2 782,666 - yedI MCAODC_19780 0.50 -1.2 782,690 + yedI MCAODC_19780 0.53 +0.0 782,770 + yedI MCAODC_19780 0.62 -0.2 782,770 + yedI MCAODC_19780 0.62 +1.9 782,771 - yedI MCAODC_19780 0.62 +0.2 782,791 + yedI MCAODC_19780 0.64 +1.0 782,792 - yedI MCAODC_19780 0.64 -1.2 782,792 - yedI MCAODC_19780 0.64 -2.3 782,808 - yedI MCAODC_19780 0.66 +0.0 782,912 - yedI MCAODC_19780 0.77 -1.5 782,915 - yedI MCAODC_19780 0.77 -1.1 782,999 + yedI MCAODC_19780 0.87 -0.5 782,999 + yedI MCAODC_19780 0.87 +0.8 783,000 - yedI MCAODC_19780 0.87 +2.6 783,011 + yedI MCAODC_19780 0.88 +1.4 783,014 + yedI MCAODC_19780 0.88 +0.2 783,015 - yedI MCAODC_19780 0.88 -0.5 783,150 + +0.9 783,151 - -0.3 783,154 + -0.8 783,154 + +0.2 783,179 + +2.0 783,223 + -1.7 783,224 - -1.3 783,224 - -1.1 783,224 - -0.6 783,256 + +0.1 783,259 + +1.9 783,259 + -0.9 783,259 + +2.4 783,342 + -2.6 783,342 + -1.2 783,342 + -1.1 783,342 + +1.5 783,342 + +1.2 783,343 - +0.5 783,343 - +1.9 783,345 - +0.8 783,460 + yedA MCAODC_19785 0.18 +2.4 783,621 - yedA MCAODC_19785 0.36 +0.6 783,774 - yedA MCAODC_19785 0.52 -0.3 783,809 + yedA MCAODC_19785 0.56 -0.6 783,810 - yedA MCAODC_19785 0.56 -0.2 783,810 - yedA MCAODC_19785 0.56 -1.0 783,814 + yedA MCAODC_19785 0.56 +1.1 783,815 - yedA MCAODC_19785 0.57 +0.0 783,821 - yedA MCAODC_19785 0.57 +0.8 783,981 + yedA MCAODC_19785 0.75 -0.2 783,981 + yedA MCAODC_19785 0.75 -0.4 783,981 + yedA MCAODC_19785 0.75 +0.8 783,981 + yedA MCAODC_19785 0.75 +0.4 783,981 + yedA MCAODC_19785 0.75 -0.2 783,982 - yedA MCAODC_19785 0.75 -0.6 783,982 - yedA MCAODC_19785 0.75 +0.1 783,983 + yedA MCAODC_19785 0.75 +0.1 783,983 + yedA MCAODC_19785 0.75 +0.7 783,983 + yedA MCAODC_19785 0.75 +1.1 783,984 - yedA MCAODC_19785 0.75 -0.8 783,987 + yedA MCAODC_19785 0.75 -0.5 783,987 + yedA MCAODC_19785 0.75 -0.3 783,987 + yedA MCAODC_19785 0.75 -0.4 783,987 + yedA MCAODC_19785 0.75 +0.5 783,991 + yedA MCAODC_19785 0.76 +0.4 784,026 + yedA MCAODC_19785 0.79 +0.0 784,026 + yedA MCAODC_19785 0.79 -0.3 784,032 + yedA MCAODC_19785 0.80 -1.4 784,032 + yedA MCAODC_19785 0.80 +0.1 784,033 - yedA MCAODC_19785 0.80 +2.2
Or see this region's nucleotide sequence