Strain Fitness in Escherichia coli ECRC101 around MCAODC_18265

Experiment: WM_Bas41

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfadK and ppsA are separated by 160 nucleotidesppsA and ppsR are separated by 332 nucleotides MCAODC_18260: fadK - medium-chain fatty-acid--CoA ligase, at 512,014 to 513,555 fadK MCAODC_18265: ppsA - phosphoenolpyruvate synthase, at 513,716 to 516,094 ppsA MCAODC_18270: ppsR - posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR, at 516,427 to 517,260 ppsR Position (kb) 513 514 515 516 517Strain fitness (log2 ratio) -2 -1 0 1 2 3at 512.772 kb on - strand, within fadKat 512.895 kb on - strand, within fadKat 513.002 kb on + strand, within fadKat 513.003 kb on - strand, within fadKat 513.003 kb on - strand, within fadKat 513.013 kb on + strand, within fadKat 513.076 kb on - strand, within fadKat 513.108 kb on - strand, within fadKat 513.218 kb on + strand, within fadKat 513.294 kb on - strand, within fadKat 513.321 kb on + strand, within fadKat 513.448 kb on + strandat 513.781 kb on + strandat 513.856 kb on - strandat 514.015 kb on - strand, within ppsAat 514.142 kb on + strand, within ppsAat 514.142 kb on + strand, within ppsAat 514.257 kb on + strand, within ppsAat 514.541 kb on - strand, within ppsAat 514.714 kb on - strand, within ppsAat 514.841 kb on - strand, within ppsAat 514.958 kb on - strand, within ppsAat 515.002 kb on + strand, within ppsAat 515.044 kb on + strand, within ppsAat 515.157 kb on + strand, within ppsAat 515.290 kb on - strand, within ppsAat 515.371 kb on - strand, within ppsAat 515.435 kb on - strand, within ppsAat 515.572 kb on - strand, within ppsAat 515.572 kb on - strand, within ppsAat 515.607 kb on - strand, within ppsAat 515.607 kb on - strand, within ppsAat 515.760 kb on + strand, within ppsAat 515.873 kb on - strandat 515.887 kb on - strandat 515.986 kb on + strandat 516.058 kb on - strandat 516.058 kb on - strandat 516.217 kb on + strandat 516.279 kb on + strandat 516.354 kb on + strandat 516.395 kb on + strandat 516.401 kb on + strandat 516.492 kb on - strandat 516.932 kb on - strand, within ppsRat 516.932 kb on - strand, within ppsR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
remove
512,772 - fadK MCAODC_18260 0.49 -0.6
512,895 - fadK MCAODC_18260 0.57 -1.0
513,002 + fadK MCAODC_18260 0.64 -2.4
513,003 - fadK MCAODC_18260 0.64 -1.0
513,003 - fadK MCAODC_18260 0.64 +1.6
513,013 + fadK MCAODC_18260 0.65 -2.1
513,076 - fadK MCAODC_18260 0.69 -0.0
513,108 - fadK MCAODC_18260 0.71 -1.3
513,218 + fadK MCAODC_18260 0.78 +0.2
513,294 - fadK MCAODC_18260 0.83 +0.7
513,321 + fadK MCAODC_18260 0.85 -0.7
513,448 + -0.2
513,781 + +0.7
513,856 - -1.2
514,015 - ppsA MCAODC_18265 0.13 -1.1
514,142 + ppsA MCAODC_18265 0.18 +0.6
514,142 + ppsA MCAODC_18265 0.18 -0.2
514,257 + ppsA MCAODC_18265 0.23 +0.5
514,541 - ppsA MCAODC_18265 0.35 +0.4
514,714 - ppsA MCAODC_18265 0.42 +0.3
514,841 - ppsA MCAODC_18265 0.47 -0.4
514,958 - ppsA MCAODC_18265 0.52 +2.1
515,002 + ppsA MCAODC_18265 0.54 +0.5
515,044 + ppsA MCAODC_18265 0.56 +0.9
515,157 + ppsA MCAODC_18265 0.61 -0.9
515,290 - ppsA MCAODC_18265 0.66 +0.2
515,371 - ppsA MCAODC_18265 0.70 +1.0
515,435 - ppsA MCAODC_18265 0.72 -0.8
515,572 - ppsA MCAODC_18265 0.78 +1.1
515,572 - ppsA MCAODC_18265 0.78 -1.2
515,607 - ppsA MCAODC_18265 0.79 -0.3
515,607 - ppsA MCAODC_18265 0.79 -1.2
515,760 + ppsA MCAODC_18265 0.86 -0.4
515,873 - -1.8
515,887 - -1.3
515,986 + +3.3
516,058 - -0.4
516,058 - -0.7
516,217 + -1.5
516,279 + -0.6
516,354 + -1.4
516,395 + +0.4
516,401 + -0.3
516,492 - -0.8
516,932 - ppsR MCAODC_18270 0.61 +1.4
516,932 - ppsR MCAODC_18270 0.61 +0.8

Or see this region's nucleotide sequence