Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldhA and ynbE are separated by 207 nucleotides ynbE and MCAODC_16150 overlap by 4 nucleotides MCAODC_16150 and ydbL are separated by 7 nucleotides ydbL and MCAODC_16160 are separated by 413 nucleotides
MCAODC_16140: ldhA - D-lactate dehydrogenase, at 116,919 to 117,908
ldhA
MCAODC_16145: ynbE - YdbH family protein, at 118,116 to 120,755
ynbE
MCAODC_16150: MCAODC_16150 - YnbE family lipoprotein, at 120,752 to 120,937
_16150
MCAODC_16155: ydbL - DUF1318 domain-containing protein, at 120,945 to 121,268
ydbL
MCAODC_16160: MCAODC_16160 - surface-exposed virulence protein BigA, at 121,682 to 124,717
_16160
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 117.141 kb on - strand, within ldhA at 117.408 kb on - strand, within ldhA at 117.485 kb on + strand, within ldhA at 117.486 kb on - strand, within ldhA at 117.486 kb on - strand, within ldhA at 117.486 kb on - strand, within ldhA at 117.489 kb on - strand, within ldhA at 117.611 kb on - strand, within ldhA at 117.697 kb on + strand, within ldhA at 117.697 kb on + strand, within ldhA at 117.698 kb on - strand, within ldhA at 117.702 kb on - strand, within ldhA at 117.762 kb on - strand, within ldhA at 118.016 kb on + strand at 118.017 kb on - strand at 118.017 kb on - strand at 118.017 kb on - strand at 118.017 kb on - strand at 118.017 kb on - strand at 118.017 kb on - strand at 118.017 kb on - strand at 118.017 kb on - strand at 118.023 kb on - strand at 118.023 kb on - strand at 118.023 kb on - strand at 118.023 kb on - strand at 118.028 kb on - strand at 118.067 kb on - strand at 118.108 kb on - strand at 118.128 kb on + strand at 118.129 kb on - strand at 118.244 kb on + strand at 118.245 kb on - strand at 118.245 kb on - strand at 118.245 kb on - strand at 118.245 kb on - strand at 118.245 kb on - strand at 118.252 kb on + strand at 118.253 kb on - strand at 118.253 kb on - strand at 118.285 kb on + strand at 118.305 kb on + strand at 118.506 kb on - strand, within ynbE at 118.634 kb on + strand, within ynbE at 118.634 kb on + strand, within ynbE at 118.634 kb on + strand, within ynbE at 118.635 kb on - strand, within ynbE at 118.700 kb on + strand, within ynbE at 118.700 kb on + strand, within ynbE at 118.703 kb on + strand, within ynbE at 118.703 kb on + strand, within ynbE at 118.745 kb on + strand, within ynbE at 118.745 kb on + strand, within ynbE at 118.878 kb on - strand, within ynbE at 119.057 kb on + strand, within ynbE at 119.077 kb on + strand, within ynbE at 119.143 kb on + strand, within ynbE at 119.143 kb on + strand, within ynbE at 119.143 kb on + strand, within ynbE at 119.145 kb on + strand, within ynbE at 119.155 kb on + strand, within ynbE at 119.444 kb on + strand, within ynbE at 119.540 kb on - strand, within ynbE at 119.544 kb on + strand, within ynbE at 119.730 kb on + strand, within ynbE at 119.731 kb on - strand, within ynbE at 119.731 kb on - strand, within ynbE at 119.752 kb on + strand, within ynbE at 119.752 kb on + strand, within ynbE at 119.802 kb on - strand, within ynbE at 119.849 kb on - strand, within ynbE at 119.904 kb on + strand, within ynbE at 119.904 kb on + strand, within ynbE at 119.905 kb on - strand, within ynbE at 119.996 kb on + strand, within ynbE at 120.229 kb on + strand, within ynbE at 120.229 kb on + strand, within ynbE at 120.229 kb on + strand, within ynbE at 120.233 kb on + strand, within ynbE at 120.234 kb on - strand, within ynbE at 120.320 kb on + strand, within ynbE at 120.461 kb on + strand, within ynbE at 120.536 kb on + strand at 120.618 kb on + strand at 120.787 kb on + strand, within MCAODC_16150 at 120.851 kb on - strand, within MCAODC_16150 at 120.965 kb on - strand at 121.160 kb on + strand, within ydbL at 121.161 kb on - strand, within ydbL at 121.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 117,141 - ldhA MCAODC_16140 0.22 -0.1 117,408 - ldhA MCAODC_16140 0.49 -0.4 117,485 + ldhA MCAODC_16140 0.57 +1.4 117,486 - ldhA MCAODC_16140 0.57 -0.1 117,486 - ldhA MCAODC_16140 0.57 -0.1 117,486 - ldhA MCAODC_16140 0.57 -1.0 117,489 - ldhA MCAODC_16140 0.58 -1.9 117,611 - ldhA MCAODC_16140 0.70 +0.4 117,697 + ldhA MCAODC_16140 0.79 -0.8 117,697 + ldhA MCAODC_16140 0.79 +2.3 117,698 - ldhA MCAODC_16140 0.79 +0.0 117,702 - ldhA MCAODC_16140 0.79 +0.6 117,762 - ldhA MCAODC_16140 0.85 +0.1 118,016 + +0.5 118,017 - +0.0 118,017 - +0.3 118,017 - -1.0 118,017 - -0.6 118,017 - +0.6 118,017 - +0.2 118,017 - -0.5 118,017 - +0.5 118,023 - +0.3 118,023 - -0.5 118,023 - -0.4 118,023 - -0.5 118,028 - +0.7 118,067 - -1.5 118,108 - -0.6 118,128 + +0.4 118,129 - -0.5 118,244 + +0.6 118,245 - -0.7 118,245 - +0.1 118,245 - +0.9 118,245 - +0.2 118,245 - +1.3 118,252 + -1.9 118,253 - +0.2 118,253 - +0.2 118,285 + -0.9 118,305 + +0.2 118,506 - ynbE MCAODC_16145 0.15 +0.7 118,634 + ynbE MCAODC_16145 0.20 +1.6 118,634 + ynbE MCAODC_16145 0.20 -1.8 118,634 + ynbE MCAODC_16145 0.20 +0.0 118,635 - ynbE MCAODC_16145 0.20 -1.0 118,700 + ynbE MCAODC_16145 0.22 -1.4 118,700 + ynbE MCAODC_16145 0.22 -0.7 118,703 + ynbE MCAODC_16145 0.22 +0.7 118,703 + ynbE MCAODC_16145 0.22 -0.7 118,745 + ynbE MCAODC_16145 0.24 +0.4 118,745 + ynbE MCAODC_16145 0.24 -1.3 118,878 - ynbE MCAODC_16145 0.29 +0.5 119,057 + ynbE MCAODC_16145 0.36 +0.4 119,077 + ynbE MCAODC_16145 0.36 -1.1 119,143 + ynbE MCAODC_16145 0.39 -0.0 119,143 + ynbE MCAODC_16145 0.39 +0.9 119,143 + ynbE MCAODC_16145 0.39 -0.1 119,145 + ynbE MCAODC_16145 0.39 +2.2 119,155 + ynbE MCAODC_16145 0.39 -0.3 119,444 + ynbE MCAODC_16145 0.50 -0.3 119,540 - ynbE MCAODC_16145 0.54 +1.4 119,544 + ynbE MCAODC_16145 0.54 +1.5 119,730 + ynbE MCAODC_16145 0.61 -1.1 119,731 - ynbE MCAODC_16145 0.61 -0.7 119,731 - ynbE MCAODC_16145 0.61 -0.4 119,752 + ynbE MCAODC_16145 0.62 -0.7 119,752 + ynbE MCAODC_16145 0.62 +1.6 119,802 - ynbE MCAODC_16145 0.64 +0.3 119,849 - ynbE MCAODC_16145 0.66 -0.7 119,904 + ynbE MCAODC_16145 0.68 -0.3 119,904 + ynbE MCAODC_16145 0.68 -0.5 119,905 - ynbE MCAODC_16145 0.68 +0.1 119,996 + ynbE MCAODC_16145 0.71 +0.8 120,229 + ynbE MCAODC_16145 0.80 -0.3 120,229 + ynbE MCAODC_16145 0.80 -1.6 120,229 + ynbE MCAODC_16145 0.80 -0.6 120,233 + ynbE MCAODC_16145 0.80 +0.4 120,234 - ynbE MCAODC_16145 0.80 -0.6 120,320 + ynbE MCAODC_16145 0.83 +0.1 120,461 + ynbE MCAODC_16145 0.89 +0.2 120,536 + -0.5 120,618 + +1.4 120,787 + MCAODC_16150 0.19 +0.9 120,851 - MCAODC_16150 0.53 +0.4 120,965 - -3.0 121,160 + ydbL MCAODC_16155 0.66 +0.4 121,161 - ydbL MCAODC_16155 0.67 +1.2 121,620 + -0.4
Or see this region's nucleotide sequence