Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_14070 and tnp-IS3 are separated by 2 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and MCAODC_14085 are separated by 76 nucleotides MCAODC_14085 and yfaU are separated by 67 nucleotides
MCAODC_14070: MCAODC_14070 - MFS transporter, at 2,757,055 to 2,757,612
_14070
MCAODC_14075: tnp-IS3 - IS3 family transposase, at 2,757,615 to 2,758,502
tnp-IS3
MCAODC_14080: tnp-IS3 - IS3 family transposase, at 2,758,502 to 2,758,828
tnp-IS3
MCAODC_14085: MCAODC_14085 - MFS transporter, at 2,758,905 to 2,759,657
_14085
MCAODC_14090: yfaU - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,759,725 to 2,760,477
yfaU
Position (kb)
2758
2759 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2757.513 kb on - strand, within MCAODC_14070 at 2758.855 kb on + strand at 2759.076 kb on - strand, within MCAODC_14085 at 2759.249 kb on + strand, within MCAODC_14085 at 2759.324 kb on + strand, within MCAODC_14085 at 2759.324 kb on + strand, within MCAODC_14085 at 2759.325 kb on - strand, within MCAODC_14085 at 2759.325 kb on - strand, within MCAODC_14085 at 2759.394 kb on - strand, within MCAODC_14085 at 2759.473 kb on + strand, within MCAODC_14085 at 2759.501 kb on + strand, within MCAODC_14085 at 2759.502 kb on - strand, within MCAODC_14085 at 2759.536 kb on + strand, within MCAODC_14085 at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.656 kb on - strand at 2759.659 kb on + strand at 2759.659 kb on + strand at 2759.659 kb on + strand at 2759.659 kb on + strand at 2759.660 kb on - strand at 2759.660 kb on - strand at 2759.688 kb on + strand at 2759.701 kb on - strand at 2759.712 kb on - strand at 2759.761 kb on + strand at 2759.761 kb on + strand at 2759.761 kb on + strand at 2759.761 kb on + strand at 2759.762 kb on - strand at 2759.762 kb on - strand at 2759.791 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 2,757,513 - MCAODC_14070 0.82 -0.0 2,758,855 + +0.4 2,759,076 - MCAODC_14085 0.23 +0.8 2,759,249 + MCAODC_14085 0.46 -1.0 2,759,324 + MCAODC_14085 0.56 -0.8 2,759,324 + MCAODC_14085 0.56 -1.9 2,759,325 - MCAODC_14085 0.56 +1.6 2,759,325 - MCAODC_14085 0.56 -0.5 2,759,394 - MCAODC_14085 0.65 +0.1 2,759,473 + MCAODC_14085 0.75 -0.3 2,759,501 + MCAODC_14085 0.79 +0.6 2,759,502 - MCAODC_14085 0.79 -0.3 2,759,536 + MCAODC_14085 0.84 +0.1 2,759,655 + -0.3 2,759,655 + +0.1 2,759,655 + -0.3 2,759,655 + +0.1 2,759,655 + -1.0 2,759,655 + +0.6 2,759,656 - +0.8 2,759,659 + -0.1 2,759,659 + -0.6 2,759,659 + +0.4 2,759,659 + +1.5 2,759,660 - +0.6 2,759,660 - -2.0 2,759,688 + -0.2 2,759,701 - +1.4 2,759,712 - -0.2 2,759,761 + -0.4 2,759,761 + -2.5 2,759,761 + +1.9 2,759,761 + -0.4 2,759,762 - -0.3 2,759,762 - +0.5 2,759,791 + +0.2
Or see this region's nucleotide sequence