Strain Fitness in Escherichia coli ECRC101 around MCAODC_11845

Experiment: WM_Bas41

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpssA and pssL overlap by 17 nucleotidespssL and pat are separated by 88 nucleotides MCAODC_11840: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 2,340,686 to 2,342,041 pssA MCAODC_11845: pssL - Protein PssL, at 2,342,025 to 2,342,066 pssL MCAODC_11850: pat - protein lysine acetyltransferase, at 2,342,155 to 2,344,815 pat Position (kb) 2342 2343Strain fitness (log2 ratio) -2 -1 0 1 2at 2342.098 kb on - strandat 2342.098 kb on - strandat 2342.148 kb on - strandat 2342.153 kb on - strandat 2342.153 kb on - strandat 2342.153 kb on - strandat 2342.153 kb on - strandat 2342.188 kb on - strandat 2342.277 kb on + strandat 2342.278 kb on - strandat 2342.278 kb on - strandat 2342.278 kb on - strandat 2342.297 kb on - strandat 2342.297 kb on - strandat 2342.297 kb on - strandat 2342.297 kb on - strandat 2342.315 kb on + strandat 2342.316 kb on - strandat 2342.316 kb on - strandat 2342.319 kb on + strandat 2342.320 kb on - strandat 2342.320 kb on - strandat 2342.320 kb on - strandat 2342.403 kb on + strandat 2342.553 kb on - strand, within patat 2342.561 kb on + strand, within patat 2342.562 kb on - strand, within patat 2342.662 kb on + strand, within patat 2342.950 kb on - strand, within pat

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
remove
2,342,098 - +0.2
2,342,098 - +0.5
2,342,148 - -0.8
2,342,153 - -0.2
2,342,153 - -0.7
2,342,153 - -0.3
2,342,153 - +2.6
2,342,188 - +0.4
2,342,277 + -1.9
2,342,278 - +1.4
2,342,278 - -0.3
2,342,278 - +0.2
2,342,297 - +0.4
2,342,297 - +1.5
2,342,297 - -0.2
2,342,297 - -0.2
2,342,315 + -0.9
2,342,316 - +0.6
2,342,316 - +1.3
2,342,319 + -0.3
2,342,320 - -0.8
2,342,320 - +0.2
2,342,320 - +1.9
2,342,403 + -0.4
2,342,553 - pat MCAODC_11850 0.15 -0.5
2,342,561 + pat MCAODC_11850 0.15 +0.3
2,342,562 - pat MCAODC_11850 0.15 -1.0
2,342,662 + pat MCAODC_11850 0.19 -1.6
2,342,950 - pat MCAODC_11850 0.30 -0.4

Or see this region's nucleotide sequence