Strain Fitness in Escherichia coli ECRC101 around MCAODC_11305

Experiment: WM_Bas41

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas41
2,247,239	+	emrB	MCAODC_11300	0.39	-0.0
2,247,283	+	emrB	MCAODC_11300	0.41	-0.4
2,247,283	+	emrB	MCAODC_11300	0.41	-0.2
2,247,335	-	emrB	MCAODC_11300	0.45	+0.4
2,247,341	+	emrB	MCAODC_11300	0.45	-0.5
2,247,341	+	emrB	MCAODC_11300	0.45	-0.4
2,247,341	+	emrB	MCAODC_11300	0.45	-0.1
2,247,341	+	emrB	MCAODC_11300	0.45	-0.3
2,247,342	-	emrB	MCAODC_11300	0.45	-0.1
2,247,342	-	emrB	MCAODC_11300	0.45	+0.2
2,247,342	-	emrB	MCAODC_11300	0.45	-0.2
2,247,342	-	emrB	MCAODC_11300	0.45	+0.5
2,247,342	-	emrB	MCAODC_11300	0.45	+0.2
2,247,342	-	emrB	MCAODC_11300	0.45	-1.6
2,247,343	+	emrB	MCAODC_11300	0.45	+0.9
2,247,344	-	emrB	MCAODC_11300	0.45	-0.5
2,247,344	-	emrB	MCAODC_11300	0.45	-0.1
2,247,344	-	emrB	MCAODC_11300	0.45	+0.6
2,247,344	-	emrB	MCAODC_11300	0.45	+0.1
2,247,357	-	emrB	MCAODC_11300	0.46	-1.0
2,247,515	+	emrB	MCAODC_11300	0.56	-0.8
2,247,516	-	emrB	MCAODC_11300	0.57	+1.0
2,247,530	+	emrB	MCAODC_11300	0.57	+0.8
2,247,554	+	emrB	MCAODC_11300	0.59	+2.0
2,247,692	-	emrB	MCAODC_11300	0.68	-1.8
2,247,695	+	emrB	MCAODC_11300	0.68	-0.1
2,247,704	+	emrB	MCAODC_11300	0.69	+1.7
2,247,704	+	emrB	MCAODC_11300	0.69	+0.3
2,247,706	+	emrB	MCAODC_11300	0.69	+1.3
2,247,707	-	emrB	MCAODC_11300	0.69	+0.0
2,247,793	+	emrB	MCAODC_11300	0.75	+0.8
2,247,798	-	emrB	MCAODC_11300	0.75	-0.4
2,247,807	+	emrB	MCAODC_11300	0.75	-0.8
2,247,875	+	emrB	MCAODC_11300	0.80	-0.6
2,247,876	-	emrB	MCAODC_11300	0.80	+3.6
2,247,915	-	emrB	MCAODC_11300	0.82	+0.8
2,247,915	-	emrB	MCAODC_11300	0.82	-1.7
2,248,123	-				-0.1
2,248,142	+				-0.7
2,248,142	+				+0.7
2,248,219	+				-0.8
2,248,220	-				-0.3
2,248,225	-				-0.1
2,248,239	+				-0.4
2,248,298	-				+0.8
2,248,302	+				-1.0
2,248,303	-				-0.0
2,248,313	-				+0.3
2,248,336	-	emrA	MCAODC_11305	0.12	-0.8
2,248,520	+	emrA	MCAODC_11305	0.27	+0.1
2,248,520	+	emrA	MCAODC_11305	0.27	-0.2
2,248,520	+	emrA	MCAODC_11305	0.27	-0.3
2,248,520	+	emrA	MCAODC_11305	0.27	-0.5
2,248,521	-	emrA	MCAODC_11305	0.27	+1.0
2,248,521	-	emrA	MCAODC_11305	0.27	-2.6
2,248,539	-	emrA	MCAODC_11305	0.29	+0.4
2,248,554	+	emrA	MCAODC_11305	0.30	+0.8
2,248,620	+	emrA	MCAODC_11305	0.36	-1.6
2,248,620	+	emrA	MCAODC_11305	0.36	-0.3
2,248,620	+	emrA	MCAODC_11305	0.36	-0.8
2,248,620	+	emrA	MCAODC_11305	0.36	-0.3
2,248,621	-	emrA	MCAODC_11305	0.36	-0.5
2,248,621	-	emrA	MCAODC_11305	0.36	-1.1
2,248,621	-	emrA	MCAODC_11305	0.36	-0.1
2,248,621	-	emrA	MCAODC_11305	0.36	+0.5
2,248,621	-	emrA	MCAODC_11305	0.36	-0.4
2,248,621	-	emrA	MCAODC_11305	0.36	-1.2
2,248,621	-	emrA	MCAODC_11305	0.36	-2.6
2,248,621	-	emrA	MCAODC_11305	0.36	-0.3
2,248,722	+	emrA	MCAODC_11305	0.44	-1.7
2,248,722	+	emrA	MCAODC_11305	0.44	-1.1
2,248,723	-	emrA	MCAODC_11305	0.45	-0.3
2,248,753	-	emrA	MCAODC_11305	0.47	+0.2
2,248,756	+	emrA	MCAODC_11305	0.47	-0.6
2,248,756	+	emrA	MCAODC_11305	0.47	+2.3
2,248,756	+	emrA	MCAODC_11305	0.47	-0.1
2,248,756	+	emrA	MCAODC_11305	0.47	-0.5
2,248,756	+	emrA	MCAODC_11305	0.47	+0.6
2,248,757	-	emrA	MCAODC_11305	0.47	+0.4
2,248,757	-	emrA	MCAODC_11305	0.47	-0.5
2,248,757	-	emrA	MCAODC_11305	0.47	+0.4
2,248,832	+	emrA	MCAODC_11305	0.54	+0.7
2,248,832	+	emrA	MCAODC_11305	0.54	-0.8
2,248,832	+	emrA	MCAODC_11305	0.54	-0.6
2,248,832	+	emrA	MCAODC_11305	0.54	+0.4
2,248,832	+	emrA	MCAODC_11305	0.54	+2.0
2,248,832	+	emrA	MCAODC_11305	0.54	+0.3
2,248,832	+	emrA	MCAODC_11305	0.54	+0.4
2,248,833	-	emrA	MCAODC_11305	0.54	-0.5
2,248,833	-	emrA	MCAODC_11305	0.54	-0.2
2,248,833	-	emrA	MCAODC_11305	0.54	-0.0
2,248,833	-	emrA	MCAODC_11305	0.54	+0.4
2,248,833	-	emrA	MCAODC_11305	0.54	-1.2
2,248,833	-	emrA	MCAODC_11305	0.54	-1.0
2,248,833	-	emrA	MCAODC_11305	0.54	+1.3
2,248,833	-	emrA	MCAODC_11305	0.54	+1.3
2,248,833	-	emrA	MCAODC_11305	0.54	-0.1
2,248,946	+	emrA	MCAODC_11305	0.64	-0.6
2,248,947	-	emrA	MCAODC_11305	0.64	+0.3
2,249,013	+	emrA	MCAODC_11305	0.69	-0.4
2,249,139	+	emrA	MCAODC_11305	0.80	-0.9
2,249,182	-	emrA	MCAODC_11305	0.84	-1.7
2,249,182	-	emrA	MCAODC_11305	0.84	+0.4
2,249,182	-	emrA	MCAODC_11305	0.84	+0.7
2,249,208	-	emrA	MCAODC_11305	0.86	+0.5
2,249,208	-	emrA	MCAODC_11305	0.86	-1.3
2,249,253	-	emrA	MCAODC_11305	0.90	+1.3
2,249,275	-				+1.0
2,249,278	+				+0.1
2,249,313	+				+1.3
2,249,314	-				-0.5
2,249,314	-				-0.8
2,249,374	-				+0.6
2,249,374	-				-0.2
2,249,394	+				+0.5
2,249,394	+				-0.2
2,249,394	+				-0.6
2,249,395	-				-0.1
2,249,469	-				-1.2
2,249,470	+				+0.6
2,249,470	+				-1.3
2,249,471	-				+0.8
2,249,471	-				+0.1
2,249,632	-	emrR	MCAODC_11310	0.25	-0.8
2,249,645	-	emrR	MCAODC_11310	0.27	-1.2
2,249,761	-	emrR	MCAODC_11310	0.49	+1.5
2,249,761	-	emrR	MCAODC_11310	0.49	-0.5
2,249,801	-	emrR	MCAODC_11310	0.57	+0.7
2,249,926	-	emrR	MCAODC_11310	0.80	-2.2
2,249,926	-	emrR	MCAODC_11310	0.80	-1.8
2,250,024	+				+0.1
2,250,025	-				-1.9
2,250,087	-				-2.0
2,250,092	+				+0.6
2,250,092	+				+0.6
2,250,093	-				+0.1
2,250,122	+				-0.5
2,250,122	+				-0.7
2,250,122	+				-0.2
2,250,124	+				+0.5
2,250,124	+				-1.4
2,250,124	+				-0.5
2,250,125	-				-0.9
2,250,125	-				-0.8
2,250,125	-				-0.6
2,250,125	-				+0.4
2,250,126	+				+2.4
2,250,126	+				-1.7
2,250,126	+				-0.7
2,250,127	-				+0.2
2,250,156	-	ygaH	MCAODC_11315	0.10	-0.8
2,250,169	-	ygaH	MCAODC_11315	0.14	+0.6
2,250,169	-	ygaH	MCAODC_11315	0.14	+0.2
2,250,201	+	ygaH	MCAODC_11315	0.24	-0.2
2,250,203	+	ygaH	MCAODC_11315	0.24	+0.5
2,250,340	+	ygaH	MCAODC_11315	0.65	-1.7
2,250,341	-	ygaH	MCAODC_11315	0.65	+0.3