Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbsB and rbsC are separated by 24 nucleotides rbsC and rbsA are separated by 4 nucleotides
MCAODC_05240: rbsB - ribose ABC transporter substrate-binding protein RbsB, at 1,055,569 to 1,056,459
rbsB
MCAODC_05245: rbsC - ribose ABC transporter permease, at 1,056,484 to 1,057,449
rbsC
MCAODC_05250: rbsA - ribose ABC transporter ATP-binding protein RbsA, at 1,057,454 to 1,058,959
rbsA
Position (kb)
1056
1057
1058 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1055.503 kb on + strand at 1055.503 kb on + strand at 1055.503 kb on + strand at 1055.503 kb on + strand at 1055.504 kb on - strand at 1055.505 kb on + strand at 1055.505 kb on + strand at 1055.506 kb on - strand at 1055.506 kb on - strand at 1055.508 kb on + strand at 1055.508 kb on + strand at 1055.509 kb on - strand at 1055.509 kb on - strand at 1055.509 kb on - strand at 1055.531 kb on + strand at 1055.531 kb on + strand at 1055.531 kb on + strand at 1055.531 kb on + strand at 1055.532 kb on - strand at 1055.532 kb on - strand at 1055.532 kb on - strand at 1055.532 kb on - strand at 1055.532 kb on - strand at 1055.532 kb on - strand at 1055.532 kb on - strand at 1055.532 kb on - strand at 1055.535 kb on + strand at 1055.535 kb on + strand at 1055.535 kb on + strand at 1055.535 kb on + strand at 1055.535 kb on + strand at 1055.535 kb on + strand at 1055.536 kb on - strand at 1055.536 kb on - strand at 1055.553 kb on + strand at 1055.571 kb on - strand at 1055.578 kb on - strand at 1055.603 kb on + strand at 1055.608 kb on - strand at 1055.637 kb on + strand at 1055.637 kb on + strand at 1055.638 kb on - strand at 1055.699 kb on - strand, within rbsB at 1055.736 kb on + strand, within rbsB at 1055.769 kb on + strand, within rbsB at 1055.827 kb on + strand, within rbsB at 1055.870 kb on - strand, within rbsB at 1055.923 kb on - strand, within rbsB at 1055.983 kb on - strand, within rbsB at 1056.041 kb on + strand, within rbsB at 1056.041 kb on + strand, within rbsB at 1056.041 kb on + strand, within rbsB at 1056.042 kb on - strand, within rbsB at 1056.042 kb on - strand, within rbsB at 1056.042 kb on - strand, within rbsB at 1056.042 kb on - strand, within rbsB at 1056.068 kb on - strand, within rbsB at 1056.068 kb on - strand, within rbsB at 1056.073 kb on - strand, within rbsB at 1056.168 kb on + strand, within rbsB at 1056.168 kb on + strand, within rbsB at 1056.168 kb on + strand, within rbsB at 1056.169 kb on - strand, within rbsB at 1056.169 kb on - strand, within rbsB at 1056.169 kb on - strand, within rbsB at 1056.173 kb on - strand, within rbsB at 1056.227 kb on - strand, within rbsB at 1056.290 kb on + strand, within rbsB at 1056.290 kb on + strand, within rbsB at 1056.291 kb on - strand, within rbsB at 1056.351 kb on + strand, within rbsB at 1056.351 kb on + strand, within rbsB at 1056.351 kb on + strand, within rbsB at 1056.351 kb on + strand, within rbsB at 1056.352 kb on - strand, within rbsB at 1056.352 kb on - strand, within rbsB at 1056.352 kb on - strand, within rbsB at 1056.415 kb on + strand at 1056.416 kb on - strand at 1056.459 kb on + strand at 1056.475 kb on + strand at 1056.486 kb on - strand at 1056.502 kb on + strand at 1056.503 kb on - strand at 1056.503 kb on - strand at 1056.551 kb on + strand at 1056.551 kb on + strand at 1056.551 kb on + strand at 1056.566 kb on - strand at 1056.582 kb on + strand, within rbsC at 1056.583 kb on - strand, within rbsC at 1056.602 kb on - strand, within rbsC at 1056.678 kb on + strand, within rbsC at 1056.678 kb on + strand, within rbsC at 1056.678 kb on + strand, within rbsC at 1056.679 kb on - strand, within rbsC at 1056.679 kb on - strand, within rbsC at 1056.679 kb on - strand, within rbsC at 1056.679 kb on - strand, within rbsC at 1056.679 kb on - strand, within rbsC at 1056.692 kb on + strand, within rbsC at 1056.693 kb on - strand, within rbsC at 1056.798 kb on + strand, within rbsC at 1056.799 kb on - strand, within rbsC at 1056.851 kb on + strand, within rbsC at 1056.851 kb on + strand, within rbsC at 1056.857 kb on + strand, within rbsC at 1056.857 kb on + strand, within rbsC at 1056.887 kb on + strand, within rbsC at 1056.887 kb on + strand, within rbsC at 1056.888 kb on - strand, within rbsC at 1056.987 kb on + strand, within rbsC at 1057.017 kb on + strand, within rbsC at 1057.017 kb on + strand, within rbsC at 1057.017 kb on + strand, within rbsC at 1057.018 kb on - strand, within rbsC at 1057.018 kb on - strand, within rbsC at 1057.018 kb on - strand, within rbsC at 1057.019 kb on + strand, within rbsC at 1057.019 kb on + strand, within rbsC at 1057.042 kb on + strand, within rbsC at 1057.053 kb on + strand, within rbsC at 1057.053 kb on + strand, within rbsC at 1057.054 kb on - strand, within rbsC at 1057.054 kb on - strand, within rbsC at 1057.094 kb on - strand, within rbsC at 1057.129 kb on + strand, within rbsC at 1057.130 kb on - strand, within rbsC at 1057.182 kb on + strand, within rbsC at 1057.182 kb on + strand, within rbsC at 1057.183 kb on - strand, within rbsC at 1057.183 kb on - strand, within rbsC at 1057.183 kb on - strand, within rbsC at 1057.313 kb on - strand, within rbsC at 1057.313 kb on - strand, within rbsC at 1057.317 kb on + strand, within rbsC at 1057.317 kb on + strand, within rbsC at 1057.317 kb on + strand, within rbsC at 1057.317 kb on + strand, within rbsC at 1057.318 kb on - strand, within rbsC at 1057.418 kb on + strand at 1057.474 kb on + strand at 1057.475 kb on - strand at 1057.499 kb on + strand at 1057.583 kb on + strand at 1057.583 kb on + strand at 1057.586 kb on + strand at 1057.586 kb on + strand at 1057.586 kb on + strand at 1057.587 kb on - strand at 1057.587 kb on - strand at 1057.587 kb on - strand at 1057.656 kb on + strand, within rbsA at 1057.656 kb on + strand, within rbsA at 1057.657 kb on - strand, within rbsA at 1057.657 kb on - strand, within rbsA at 1057.657 kb on - strand, within rbsA at 1057.657 kb on - strand, within rbsA at 1057.683 kb on - strand, within rbsA at 1057.693 kb on + strand, within rbsA at 1057.694 kb on - strand, within rbsA at 1057.826 kb on - strand, within rbsA at 1057.888 kb on - strand, within rbsA at 1057.919 kb on + strand, within rbsA at 1057.919 kb on + strand, within rbsA at 1057.920 kb on - strand, within rbsA at 1057.938 kb on - strand, within rbsA at 1057.938 kb on - strand, within rbsA at 1057.966 kb on + strand, within rbsA at 1057.966 kb on + strand, within rbsA at 1057.967 kb on - strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.968 kb on + strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1057.969 kb on - strand, within rbsA at 1058.037 kb on + strand, within rbsA at 1058.037 kb on + strand, within rbsA at 1058.064 kb on + strand, within rbsA at 1058.065 kb on - strand, within rbsA at 1058.135 kb on + strand, within rbsA at 1058.140 kb on + strand, within rbsA at 1058.140 kb on + strand, within rbsA at 1058.141 kb on - strand, within rbsA at 1058.141 kb on - strand, within rbsA at 1058.195 kb on - strand, within rbsA at 1058.302 kb on + strand, within rbsA at 1058.303 kb on - strand, within rbsA at 1058.303 kb on - strand, within rbsA at 1058.371 kb on + strand, within rbsA at 1058.371 kb on + strand, within rbsA at 1058.371 kb on + strand, within rbsA at 1058.371 kb on + strand, within rbsA at 1058.371 kb on + strand, within rbsA at 1058.371 kb on + strand, within rbsA at 1058.371 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.373 kb on + strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA at 1058.374 kb on - strand, within rbsA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 1,055,503 + -0.8 1,055,503 + -1.0 1,055,503 + -0.8 1,055,503 + +0.1 1,055,504 - -0.3 1,055,505 + -0.2 1,055,505 + +0.1 1,055,506 - +1.0 1,055,506 - -0.8 1,055,508 + -1.0 1,055,508 + -0.3 1,055,509 - -2.0 1,055,509 - -0.6 1,055,509 - +0.4 1,055,531 + +0.9 1,055,531 + +0.3 1,055,531 + -1.3 1,055,531 + -0.6 1,055,532 - -0.3 1,055,532 - +0.8 1,055,532 - -0.1 1,055,532 - +0.5 1,055,532 - -0.2 1,055,532 - -0.9 1,055,532 - +1.3 1,055,532 - +1.6 1,055,535 + -0.3 1,055,535 + +0.3 1,055,535 + -2.1 1,055,535 + -0.7 1,055,535 + -0.3 1,055,535 + +0.4 1,055,536 - -0.4 1,055,536 - -2.1 1,055,553 + +1.0 1,055,571 - -3.1 1,055,578 - +2.0 1,055,603 + -0.3 1,055,608 - +1.2 1,055,637 + +1.0 1,055,637 + +0.0 1,055,638 - -0.3 1,055,699 - rbsB MCAODC_05240 0.15 -0.3 1,055,736 + rbsB MCAODC_05240 0.19 +1.0 1,055,769 + rbsB MCAODC_05240 0.22 +0.7 1,055,827 + rbsB MCAODC_05240 0.29 -0.4 1,055,870 - rbsB MCAODC_05240 0.34 -0.3 1,055,923 - rbsB MCAODC_05240 0.40 +0.4 1,055,983 - rbsB MCAODC_05240 0.46 -1.8 1,056,041 + rbsB MCAODC_05240 0.53 -0.5 1,056,041 + rbsB MCAODC_05240 0.53 +1.3 1,056,041 + rbsB MCAODC_05240 0.53 +0.1 1,056,042 - rbsB MCAODC_05240 0.53 +0.4 1,056,042 - rbsB MCAODC_05240 0.53 +0.5 1,056,042 - rbsB MCAODC_05240 0.53 +0.9 1,056,042 - rbsB MCAODC_05240 0.53 -0.7 1,056,068 - rbsB MCAODC_05240 0.56 +0.3 1,056,068 - rbsB MCAODC_05240 0.56 +0.8 1,056,073 - rbsB MCAODC_05240 0.57 -0.7 1,056,168 + rbsB MCAODC_05240 0.67 -0.4 1,056,168 + rbsB MCAODC_05240 0.67 +1.5 1,056,168 + rbsB MCAODC_05240 0.67 -1.6 1,056,169 - rbsB MCAODC_05240 0.67 -0.1 1,056,169 - rbsB MCAODC_05240 0.67 -0.1 1,056,169 - rbsB MCAODC_05240 0.67 +1.9 1,056,173 - rbsB MCAODC_05240 0.68 -1.0 1,056,227 - rbsB MCAODC_05240 0.74 -0.1 1,056,290 + rbsB MCAODC_05240 0.81 +0.8 1,056,290 + rbsB MCAODC_05240 0.81 -1.1 1,056,291 - rbsB MCAODC_05240 0.81 +0.2 1,056,351 + rbsB MCAODC_05240 0.88 +0.0 1,056,351 + rbsB MCAODC_05240 0.88 +1.3 1,056,351 + rbsB MCAODC_05240 0.88 +4.0 1,056,351 + rbsB MCAODC_05240 0.88 +0.4 1,056,352 - rbsB MCAODC_05240 0.88 +0.6 1,056,352 - rbsB MCAODC_05240 0.88 +0.1 1,056,352 - rbsB MCAODC_05240 0.88 +0.8 1,056,415 + +0.5 1,056,416 - +1.5 1,056,459 + +0.2 1,056,475 + +0.1 1,056,486 - +1.6 1,056,502 + -0.3 1,056,503 - -0.2 1,056,503 - -2.2 1,056,551 + +0.7 1,056,551 + -1.2 1,056,551 + +2.0 1,056,566 - -0.0 1,056,582 + rbsC MCAODC_05245 0.10 +0.7 1,056,583 - rbsC MCAODC_05245 0.10 +1.2 1,056,602 - rbsC MCAODC_05245 0.12 +0.3 1,056,678 + rbsC MCAODC_05245 0.20 +0.0 1,056,678 + rbsC MCAODC_05245 0.20 -0.8 1,056,678 + rbsC MCAODC_05245 0.20 -0.8 1,056,679 - rbsC MCAODC_05245 0.20 +0.6 1,056,679 - rbsC MCAODC_05245 0.20 +1.7 1,056,679 - rbsC MCAODC_05245 0.20 -1.1 1,056,679 - rbsC MCAODC_05245 0.20 +0.4 1,056,679 - rbsC MCAODC_05245 0.20 -0.4 1,056,692 + rbsC MCAODC_05245 0.22 +0.7 1,056,693 - rbsC MCAODC_05245 0.22 -1.9 1,056,798 + rbsC MCAODC_05245 0.33 -0.2 1,056,799 - rbsC MCAODC_05245 0.33 -0.1 1,056,851 + rbsC MCAODC_05245 0.38 +0.2 1,056,851 + rbsC MCAODC_05245 0.38 -0.2 1,056,857 + rbsC MCAODC_05245 0.39 -1.4 1,056,857 + rbsC MCAODC_05245 0.39 +0.6 1,056,887 + rbsC MCAODC_05245 0.42 +1.5 1,056,887 + rbsC MCAODC_05245 0.42 -0.2 1,056,888 - rbsC MCAODC_05245 0.42 -1.1 1,056,987 + rbsC MCAODC_05245 0.52 +0.7 1,057,017 + rbsC MCAODC_05245 0.55 +0.1 1,057,017 + rbsC MCAODC_05245 0.55 +0.3 1,057,017 + rbsC MCAODC_05245 0.55 -0.7 1,057,018 - rbsC MCAODC_05245 0.55 -1.3 1,057,018 - rbsC MCAODC_05245 0.55 +1.2 1,057,018 - rbsC MCAODC_05245 0.55 -1.4 1,057,019 + rbsC MCAODC_05245 0.55 +0.3 1,057,019 + rbsC MCAODC_05245 0.55 +0.2 1,057,042 + rbsC MCAODC_05245 0.58 -0.3 1,057,053 + rbsC MCAODC_05245 0.59 +0.9 1,057,053 + rbsC MCAODC_05245 0.59 -0.3 1,057,054 - rbsC MCAODC_05245 0.59 -0.4 1,057,054 - rbsC MCAODC_05245 0.59 -0.1 1,057,094 - rbsC MCAODC_05245 0.63 -0.1 1,057,129 + rbsC MCAODC_05245 0.67 -0.3 1,057,130 - rbsC MCAODC_05245 0.67 +0.8 1,057,182 + rbsC MCAODC_05245 0.72 -0.0 1,057,182 + rbsC MCAODC_05245 0.72 +0.3 1,057,183 - rbsC MCAODC_05245 0.72 -1.9 1,057,183 - rbsC MCAODC_05245 0.72 +0.9 1,057,183 - rbsC MCAODC_05245 0.72 +1.2 1,057,313 - rbsC MCAODC_05245 0.86 -2.7 1,057,313 - rbsC MCAODC_05245 0.86 -2.0 1,057,317 + rbsC MCAODC_05245 0.86 -0.3 1,057,317 + rbsC MCAODC_05245 0.86 -0.1 1,057,317 + rbsC MCAODC_05245 0.86 -2.1 1,057,317 + rbsC MCAODC_05245 0.86 +0.1 1,057,318 - rbsC MCAODC_05245 0.86 +0.6 1,057,418 + -0.3 1,057,474 + +0.7 1,057,475 - -0.4 1,057,499 + +0.7 1,057,583 + -0.1 1,057,583 + -0.4 1,057,586 + -0.1 1,057,586 + -0.4 1,057,586 + +1.1 1,057,587 - -0.5 1,057,587 - -0.0 1,057,587 - -0.3 1,057,656 + rbsA MCAODC_05250 0.13 -0.9 1,057,656 + rbsA MCAODC_05250 0.13 -0.1 1,057,657 - rbsA MCAODC_05250 0.13 +0.8 1,057,657 - rbsA MCAODC_05250 0.13 +0.3 1,057,657 - rbsA MCAODC_05250 0.13 +2.1 1,057,657 - rbsA MCAODC_05250 0.13 +1.3 1,057,683 - rbsA MCAODC_05250 0.15 +0.3 1,057,693 + rbsA MCAODC_05250 0.16 +0.7 1,057,694 - rbsA MCAODC_05250 0.16 +0.7 1,057,826 - rbsA MCAODC_05250 0.25 -0.8 1,057,888 - rbsA MCAODC_05250 0.29 +0.8 1,057,919 + rbsA MCAODC_05250 0.31 -0.4 1,057,919 + rbsA MCAODC_05250 0.31 -1.1 1,057,920 - rbsA MCAODC_05250 0.31 -0.0 1,057,938 - rbsA MCAODC_05250 0.32 +2.0 1,057,938 - rbsA MCAODC_05250 0.32 -0.3 1,057,966 + rbsA MCAODC_05250 0.34 -1.2 1,057,966 + rbsA MCAODC_05250 0.34 +0.1 1,057,967 - rbsA MCAODC_05250 0.34 -1.6 1,057,968 + rbsA MCAODC_05250 0.34 -1.0 1,057,968 + rbsA MCAODC_05250 0.34 -0.0 1,057,968 + rbsA MCAODC_05250 0.34 +0.7 1,057,968 + rbsA MCAODC_05250 0.34 -0.4 1,057,968 + rbsA MCAODC_05250 0.34 -0.4 1,057,968 + rbsA MCAODC_05250 0.34 +0.6 1,057,968 + rbsA MCAODC_05250 0.34 +0.3 1,057,968 + rbsA MCAODC_05250 0.34 +0.4 1,057,968 + rbsA MCAODC_05250 0.34 +0.4 1,057,968 + rbsA MCAODC_05250 0.34 +0.2 1,057,969 - rbsA MCAODC_05250 0.34 -0.3 1,057,969 - rbsA MCAODC_05250 0.34 +1.5 1,057,969 - rbsA MCAODC_05250 0.34 -0.4 1,057,969 - rbsA MCAODC_05250 0.34 -1.9 1,057,969 - rbsA MCAODC_05250 0.34 -0.4 1,057,969 - rbsA MCAODC_05250 0.34 +0.6 1,057,969 - rbsA MCAODC_05250 0.34 -0.8 1,057,969 - rbsA MCAODC_05250 0.34 +0.3 1,057,969 - rbsA MCAODC_05250 0.34 -2.0 1,058,037 + rbsA MCAODC_05250 0.39 +0.3 1,058,037 + rbsA MCAODC_05250 0.39 -0.6 1,058,064 + rbsA MCAODC_05250 0.41 -0.0 1,058,065 - rbsA MCAODC_05250 0.41 -0.7 1,058,135 + rbsA MCAODC_05250 0.45 +1.6 1,058,140 + rbsA MCAODC_05250 0.46 +0.9 1,058,140 + rbsA MCAODC_05250 0.46 +0.2 1,058,141 - rbsA MCAODC_05250 0.46 -0.4 1,058,141 - rbsA MCAODC_05250 0.46 -0.9 1,058,195 - rbsA MCAODC_05250 0.49 -0.3 1,058,302 + rbsA MCAODC_05250 0.56 +0.2 1,058,303 - rbsA MCAODC_05250 0.56 +0.4 1,058,303 - rbsA MCAODC_05250 0.56 -0.3 1,058,371 + rbsA MCAODC_05250 0.61 -0.2 1,058,371 + rbsA MCAODC_05250 0.61 +0.5 1,058,371 + rbsA MCAODC_05250 0.61 -0.2 1,058,371 + rbsA MCAODC_05250 0.61 -0.0 1,058,371 + rbsA MCAODC_05250 0.61 -0.1 1,058,371 + rbsA MCAODC_05250 0.61 -0.6 1,058,371 + rbsA MCAODC_05250 0.61 +0.0 1,058,373 + rbsA MCAODC_05250 0.61 -0.5 1,058,373 + rbsA MCAODC_05250 0.61 -0.3 1,058,373 + rbsA MCAODC_05250 0.61 -0.9 1,058,373 + rbsA MCAODC_05250 0.61 +0.4 1,058,373 + rbsA MCAODC_05250 0.61 -1.3 1,058,373 + rbsA MCAODC_05250 0.61 -1.0 1,058,373 + rbsA MCAODC_05250 0.61 +0.1 1,058,373 + rbsA MCAODC_05250 0.61 -0.9 1,058,374 - rbsA MCAODC_05250 0.61 +1.0 1,058,374 - rbsA MCAODC_05250 0.61 +0.6 1,058,374 - rbsA MCAODC_05250 0.61 -1.5 1,058,374 - rbsA MCAODC_05250 0.61 +1.1 1,058,374 - rbsA MCAODC_05250 0.61 -0.7 1,058,374 - rbsA MCAODC_05250 0.61 -0.2 1,058,374 - rbsA MCAODC_05250 0.61 +1.1 1,058,374 - rbsA MCAODC_05250 0.61 +1.0 1,058,374 - rbsA MCAODC_05250 0.61 +0.7 1,058,374 - rbsA MCAODC_05250 0.61 -0.4 1,058,374 - rbsA MCAODC_05250 0.61 -0.8 1,058,374 - rbsA MCAODC_05250 0.61 -0.4 1,058,374 - rbsA MCAODC_05250 0.61 +0.2
Or see this region's nucleotide sequence