Strain Fitness in Escherichia coli ECRC101 around MCAODC_03260
Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | WM_Bas41 |
---|---|---|---|---|---|
remove | |||||
655,982 | + | yjcS | MCAODC_03255 | 0.60 | -1.1 |
655,982 | + | yjcS | MCAODC_03255 | 0.60 | +0.6 |
655,982 | + | yjcS | MCAODC_03255 | 0.60 | -0.4 |
655,983 | - | yjcS | MCAODC_03255 | 0.60 | +0.6 |
656,007 | - | yjcS | MCAODC_03255 | 0.62 | +0.7 |
656,007 | - | yjcS | MCAODC_03255 | 0.62 | +0.4 |
656,026 | - | yjcS | MCAODC_03255 | 0.63 | +0.9 |
656,028 | + | yjcS | MCAODC_03255 | 0.63 | -0.4 |
656,028 | + | yjcS | MCAODC_03255 | 0.63 | -1.1 |
656,061 | + | yjcS | MCAODC_03255 | 0.64 | -1.0 |
656,062 | - | yjcS | MCAODC_03255 | 0.64 | -0.2 |
656,062 | - | yjcS | MCAODC_03255 | 0.64 | +0.5 |
656,062 | - | yjcS | MCAODC_03255 | 0.64 | -0.0 |
656,063 | + | yjcS | MCAODC_03255 | 0.64 | -0.9 |
656,063 | + | yjcS | MCAODC_03255 | 0.64 | +0.6 |
656,063 | + | yjcS | MCAODC_03255 | 0.64 | +1.0 |
656,064 | - | yjcS | MCAODC_03255 | 0.65 | +0.5 |
656,064 | - | yjcS | MCAODC_03255 | 0.65 | -0.4 |
656,064 | - | yjcS | MCAODC_03255 | 0.65 | -0.1 |
656,079 | + | yjcS | MCAODC_03255 | 0.65 | -0.1 |
656,082 | + | yjcS | MCAODC_03255 | 0.65 | +0.5 |
656,082 | + | yjcS | MCAODC_03255 | 0.65 | +0.7 |
656,083 | - | yjcS | MCAODC_03255 | 0.65 | +0.3 |
656,083 | - | yjcS | MCAODC_03255 | 0.65 | +0.4 |
656,122 | + | yjcS | MCAODC_03255 | 0.67 | -0.8 |
656,122 | + | yjcS | MCAODC_03255 | 0.67 | +0.4 |
656,123 | - | yjcS | MCAODC_03255 | 0.67 | -0.0 |
656,123 | - | yjcS | MCAODC_03255 | 0.67 | -0.1 |
656,140 | - | yjcS | MCAODC_03255 | 0.68 | -0.5 |
656,140 | - | yjcS | MCAODC_03255 | 0.68 | +0.5 |
656,140 | - | yjcS | MCAODC_03255 | 0.68 | -1.5 |
656,195 | + | yjcS | MCAODC_03255 | 0.71 | -0.2 |
656,196 | - | yjcS | MCAODC_03255 | 0.71 | +0.1 |
656,196 | - | yjcS | MCAODC_03255 | 0.71 | -0.9 |
656,227 | + | yjcS | MCAODC_03255 | 0.73 | +0.4 |
656,227 | + | yjcS | MCAODC_03255 | 0.73 | -0.9 |
656,228 | - | yjcS | MCAODC_03255 | 0.73 | +0.3 |
656,228 | - | yjcS | MCAODC_03255 | 0.73 | -1.9 |
656,340 | + | yjcS | MCAODC_03255 | 0.78 | +0.4 |
656,341 | - | yjcS | MCAODC_03255 | 0.78 | +0.5 |
656,378 | + | yjcS | MCAODC_03255 | 0.80 | +0.3 |
656,378 | + | yjcS | MCAODC_03255 | 0.80 | +0.4 |
656,378 | + | yjcS | MCAODC_03255 | 0.80 | +0.1 |
656,378 | + | yjcS | MCAODC_03255 | 0.80 | -1.9 |
656,378 | + | yjcS | MCAODC_03255 | 0.80 | +0.1 |
656,378 | + | yjcS | MCAODC_03255 | 0.80 | -0.4 |
656,379 | - | yjcS | MCAODC_03255 | 0.80 | -0.4 |
656,379 | - | yjcS | MCAODC_03255 | 0.80 | +0.2 |
656,379 | - | yjcS | MCAODC_03255 | 0.80 | -0.2 |
656,493 | - | yjcS | MCAODC_03255 | 0.86 | -0.2 |
656,511 | - | yjcS | MCAODC_03255 | 0.87 | -0.3 |
656,511 | - | yjcS | MCAODC_03255 | 0.87 | +0.6 |
656,511 | - | yjcS | MCAODC_03255 | 0.87 | +0.6 |
656,558 | + | yjcS | MCAODC_03255 | 0.89 | +1.0 |
656,558 | + | yjcS | MCAODC_03255 | 0.89 | -0.6 |
656,558 | + | yjcS | MCAODC_03255 | 0.89 | +0.2 |
656,559 | - | yjcS | MCAODC_03255 | 0.89 | -0.1 |
656,559 | - | yjcS | MCAODC_03255 | 0.89 | +1.2 |
656,562 | + | yjcS | MCAODC_03255 | 0.90 | -0.6 |
656,567 | + | yjcS | MCAODC_03255 | 0.90 | -0.2 |
656,568 | - | yjcS | MCAODC_03255 | 0.90 | -3.2 |
656,568 | - | yjcS | MCAODC_03255 | 0.90 | +0.1 |
656,601 | + | +1.4 | |||
656,601 | + | -1.2 | |||
656,601 | + | +0.7 | |||
656,602 | - | -0.8 | |||
656,602 | - | +1.0 | |||
656,851 | + | +1.0 | |||
656,852 | - | -0.2 | |||
656,852 | - | -2.3 | |||
657,171 | + | ytcA | MCAODC_03260 | 0.70 | -0.1 |
657,256 | - | -0.4 | |||
657,256 | - | -0.4 | |||
657,256 | - | -0.0 | |||
657,279 | + | -0.8 | |||
657,321 | - | +0.2 | |||
657,387 | + | mdtN | MCAODC_03265 | 0.11 | +1.6 |
657,387 | + | mdtN | MCAODC_03265 | 0.11 | -0.1 |
657,388 | - | mdtN | MCAODC_03265 | 0.11 | +0.8 |
657,388 | - | mdtN | MCAODC_03265 | 0.11 | +1.3 |
657,388 | - | mdtN | MCAODC_03265 | 0.11 | -0.9 |
657,388 | - | mdtN | MCAODC_03265 | 0.11 | -0.4 |
657,388 | - | mdtN | MCAODC_03265 | 0.11 | +0.7 |
657,397 | + | mdtN | MCAODC_03265 | 0.12 | +0.6 |
657,397 | + | mdtN | MCAODC_03265 | 0.12 | -0.3 |
657,397 | + | mdtN | MCAODC_03265 | 0.12 | -2.1 |
657,397 | + | mdtN | MCAODC_03265 | 0.12 | +0.1 |
657,397 | + | mdtN | MCAODC_03265 | 0.12 | +0.7 |
657,397 | + | mdtN | MCAODC_03265 | 0.12 | -1.4 |
657,398 | - | mdtN | MCAODC_03265 | 0.12 | +0.5 |
657,398 | - | mdtN | MCAODC_03265 | 0.12 | -0.6 |
657,412 | - | mdtN | MCAODC_03265 | 0.14 | -0.1 |
657,412 | - | mdtN | MCAODC_03265 | 0.14 | +0.8 |
657,449 | + | mdtN | MCAODC_03265 | 0.17 | +0.5 |
657,449 | + | mdtN | MCAODC_03265 | 0.17 | +0.2 |
657,449 | + | mdtN | MCAODC_03265 | 0.17 | +1.8 |
657,450 | - | mdtN | MCAODC_03265 | 0.17 | -0.3 |
657,450 | - | mdtN | MCAODC_03265 | 0.17 | -0.0 |
657,576 | + | mdtN | MCAODC_03265 | 0.30 | +0.4 |
657,576 | + | mdtN | MCAODC_03265 | 0.30 | +1.0 |
657,576 | + | mdtN | MCAODC_03265 | 0.30 | -0.5 |
657,675 | + | mdtN | MCAODC_03265 | 0.39 | +0.3 |
657,675 | + | mdtN | MCAODC_03265 | 0.39 | +0.1 |
657,675 | + | mdtN | MCAODC_03265 | 0.39 | +0.4 |
657,675 | + | mdtN | MCAODC_03265 | 0.39 | +0.1 |
657,675 | + | mdtN | MCAODC_03265 | 0.39 | +0.2 |
657,675 | + | mdtN | MCAODC_03265 | 0.39 | +0.1 |
657,676 | - | mdtN | MCAODC_03265 | 0.39 | +0.2 |
657,676 | - | mdtN | MCAODC_03265 | 0.39 | -1.3 |
657,676 | - | mdtN | MCAODC_03265 | 0.39 | -1.2 |
657,676 | - | mdtN | MCAODC_03265 | 0.39 | -0.2 |
657,680 | + | mdtN | MCAODC_03265 | 0.40 | -0.1 |
657,774 | + | mdtN | MCAODC_03265 | 0.49 | -1.3 |
657,774 | + | mdtN | MCAODC_03265 | 0.49 | -0.3 |
657,774 | + | mdtN | MCAODC_03265 | 0.49 | +0.4 |
657,774 | + | mdtN | MCAODC_03265 | 0.49 | +1.5 |
657,775 | - | mdtN | MCAODC_03265 | 0.49 | -0.2 |
657,775 | - | mdtN | MCAODC_03265 | 0.49 | +0.0 |
657,782 | + | mdtN | MCAODC_03265 | 0.50 | -1.1 |
657,782 | + | mdtN | MCAODC_03265 | 0.50 | -0.8 |
657,833 | + | mdtN | MCAODC_03265 | 0.54 | -1.8 |
657,833 | + | mdtN | MCAODC_03265 | 0.54 | -0.3 |
657,833 | + | mdtN | MCAODC_03265 | 0.54 | +1.0 |
657,834 | - | mdtN | MCAODC_03265 | 0.55 | -0.9 |
657,834 | - | mdtN | MCAODC_03265 | 0.55 | +0.9 |
657,834 | - | mdtN | MCAODC_03265 | 0.55 | -0.2 |
657,982 | - | mdtN | MCAODC_03265 | 0.69 | -0.4 |
657,986 | + | mdtN | MCAODC_03265 | 0.69 | -0.0 |
658,006 | + | mdtN | MCAODC_03265 | 0.71 | +0.6 |
658,056 | + | mdtN | MCAODC_03265 | 0.76 | -1.8 |
658,056 | + | mdtN | MCAODC_03265 | 0.76 | -1.6 |
658,057 | - | mdtN | MCAODC_03265 | 0.76 | +1.7 |
658,188 | + | mdtN | MCAODC_03265 | 0.89 | +0.8 |
658,189 | - | mdtN | MCAODC_03265 | 0.89 | -0.2 |
658,191 | + | mdtN | MCAODC_03265 | 0.89 | +0.7 |
658,191 | + | mdtN | MCAODC_03265 | 0.89 | +1.0 |
658,192 | - | mdtN | MCAODC_03265 | 0.89 | +0.4 |
658,240 | - | -0.1 |
Or see this region's nucleotide sequence