Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbsK and ompR overlap by 4 nucleotides ompR and yjcS are separated by 290 nucleotides yjcS and ytcA are separated by 208 nucleotides ytcA and mdtN are separated by 18 nucleotides
MCAODC_03245: rbsK - sugar kinase, at 652,787 to 653,788
rbsK
MCAODC_03250: ompR - DNA-binding response regulator, at 653,785 to 654,492
ompR
MCAODC_03255: yjcS - alkyl sulfatase YjcS, at 654,783 to 656,768
yjcS
MCAODC_03260: ytcA - Uncharacterized protein YtcA, at 656,977 to 657,252
ytcA
MCAODC_03265: mdtN - multidrug efflux transporter periplasmic adaptor subunit MdtN, at 657,271 to 658,302
mdtN
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 653.787 kb on - strand at 653.787 kb on - strand at 653.810 kb on + strand at 653.832 kb on + strand at 653.832 kb on + strand at 653.832 kb on + strand at 653.875 kb on + strand, within ompR at 653.888 kb on - strand, within ompR at 653.890 kb on + strand, within ompR at 653.890 kb on + strand, within ompR at 653.891 kb on - strand, within ompR at 653.993 kb on - strand, within ompR at 654.191 kb on + strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.298 kb on + strand, within ompR at 654.330 kb on + strand, within ompR at 654.330 kb on + strand, within ompR at 654.330 kb on + strand, within ompR at 654.331 kb on - strand, within ompR at 654.369 kb on + strand, within ompR at 654.377 kb on - strand, within ompR at 654.411 kb on + strand, within ompR at 654.427 kb on + strand at 654.428 kb on - strand at 654.428 kb on - strand at 654.454 kb on - strand at 654.496 kb on + strand at 654.533 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.612 kb on - strand at 654.732 kb on + strand at 654.781 kb on - strand at 654.899 kb on + strand at 654.900 kb on - strand at 655.005 kb on - strand, within yjcS at 655.005 kb on - strand, within yjcS at 655.050 kb on + strand, within yjcS at 655.051 kb on - strand, within yjcS at 655.061 kb on + strand, within yjcS at 655.158 kb on + strand, within yjcS at 655.158 kb on + strand, within yjcS at 655.159 kb on - strand, within yjcS at 655.178 kb on + strand, within yjcS at 655.185 kb on - strand, within yjcS at 655.185 kb on - strand, within yjcS at 655.190 kb on + strand, within yjcS at 655.190 kb on + strand, within yjcS at 655.191 kb on - strand, within yjcS at 655.191 kb on - strand, within yjcS at 655.191 kb on - strand, within yjcS at 655.191 kb on - strand, within yjcS at 655.218 kb on - strand, within yjcS at 655.218 kb on - strand, within yjcS at 655.272 kb on + strand, within yjcS at 655.273 kb on - strand, within yjcS at 655.314 kb on + strand, within yjcS at 655.314 kb on + strand, within yjcS at 655.314 kb on + strand, within yjcS at 655.315 kb on - strand, within yjcS at 655.339 kb on - strand, within yjcS at 655.339 kb on - strand, within yjcS at 655.359 kb on - strand, within yjcS at 655.359 kb on - strand, within yjcS at 655.359 kb on - strand, within yjcS at 655.359 kb on - strand, within yjcS at 655.377 kb on - strand, within yjcS at 655.476 kb on + strand, within yjcS at 655.483 kb on - strand, within yjcS at 655.483 kb on - strand, within yjcS at 655.524 kb on - strand, within yjcS at 655.578 kb on - strand, within yjcS at 655.583 kb on + strand, within yjcS at 655.677 kb on + strand, within yjcS at 655.677 kb on + strand, within yjcS at 655.677 kb on + strand, within yjcS at 655.677 kb on + strand, within yjcS at 655.677 kb on + strand, within yjcS at 655.677 kb on + strand, within yjcS at 655.677 kb on + strand, within yjcS at 655.678 kb on - strand, within yjcS at 655.678 kb on - strand, within yjcS at 655.678 kb on - strand, within yjcS at 655.678 kb on - strand, within yjcS at 655.678 kb on - strand, within yjcS at 655.704 kb on - strand, within yjcS at 655.724 kb on + strand, within yjcS at 655.724 kb on + strand, within yjcS at 655.725 kb on - strand, within yjcS at 655.740 kb on + strand, within yjcS at 655.741 kb on - strand, within yjcS at 655.808 kb on + strand, within yjcS at 655.809 kb on - strand, within yjcS at 655.809 kb on - strand, within yjcS at 655.831 kb on + strand, within yjcS at 655.839 kb on - strand, within yjcS at 655.874 kb on + strand, within yjcS at 655.875 kb on - strand, within yjcS at 655.884 kb on + strand, within yjcS at 655.884 kb on + strand, within yjcS at 655.885 kb on - strand, within yjcS at 655.885 kb on - strand, within yjcS at 655.886 kb on + strand, within yjcS at 655.887 kb on - strand, within yjcS at 655.908 kb on - strand, within yjcS at 655.982 kb on + strand, within yjcS at 655.982 kb on + strand, within yjcS at 655.982 kb on + strand, within yjcS at 655.983 kb on - strand, within yjcS at 656.007 kb on - strand, within yjcS at 656.007 kb on - strand, within yjcS at 656.026 kb on - strand, within yjcS at 656.028 kb on + strand, within yjcS at 656.028 kb on + strand, within yjcS at 656.061 kb on + strand, within yjcS at 656.062 kb on - strand, within yjcS at 656.062 kb on - strand, within yjcS at 656.062 kb on - strand, within yjcS at 656.063 kb on + strand, within yjcS at 656.063 kb on + strand, within yjcS at 656.063 kb on + strand, within yjcS at 656.064 kb on - strand, within yjcS at 656.064 kb on - strand, within yjcS at 656.064 kb on - strand, within yjcS at 656.079 kb on + strand, within yjcS at 656.082 kb on + strand, within yjcS at 656.082 kb on + strand, within yjcS at 656.083 kb on - strand, within yjcS at 656.083 kb on - strand, within yjcS at 656.122 kb on + strand, within yjcS at 656.122 kb on + strand, within yjcS at 656.123 kb on - strand, within yjcS at 656.123 kb on - strand, within yjcS at 656.140 kb on - strand, within yjcS at 656.140 kb on - strand, within yjcS at 656.140 kb on - strand, within yjcS at 656.195 kb on + strand, within yjcS at 656.196 kb on - strand, within yjcS at 656.196 kb on - strand, within yjcS at 656.227 kb on + strand, within yjcS at 656.227 kb on + strand, within yjcS at 656.228 kb on - strand, within yjcS at 656.228 kb on - strand, within yjcS at 656.340 kb on + strand, within yjcS at 656.341 kb on - strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.379 kb on - strand, within yjcS at 656.379 kb on - strand, within yjcS at 656.379 kb on - strand, within yjcS at 656.493 kb on - strand, within yjcS at 656.511 kb on - strand, within yjcS at 656.511 kb on - strand, within yjcS at 656.511 kb on - strand, within yjcS at 656.558 kb on + strand, within yjcS at 656.558 kb on + strand, within yjcS at 656.558 kb on + strand, within yjcS at 656.559 kb on - strand, within yjcS at 656.559 kb on - strand, within yjcS at 656.562 kb on + strand, within yjcS at 656.567 kb on + strand, within yjcS at 656.568 kb on - strand, within yjcS at 656.568 kb on - strand, within yjcS at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.602 kb on - strand at 656.602 kb on - strand at 656.851 kb on + strand at 656.852 kb on - strand at 656.852 kb on - strand at 657.171 kb on + strand, within ytcA at 657.256 kb on - strand at 657.256 kb on - strand at 657.256 kb on - strand at 657.279 kb on + strand at 657.321 kb on - strand at 657.387 kb on + strand, within mdtN at 657.387 kb on + strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.398 kb on - strand, within mdtN at 657.398 kb on - strand, within mdtN at 657.412 kb on - strand, within mdtN at 657.412 kb on - strand, within mdtN at 657.449 kb on + strand, within mdtN at 657.449 kb on + strand, within mdtN at 657.449 kb on + strand, within mdtN at 657.450 kb on - strand, within mdtN at 657.450 kb on - strand, within mdtN at 657.576 kb on + strand, within mdtN at 657.576 kb on + strand, within mdtN at 657.576 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.680 kb on + strand, within mdtN
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 653,787 - +1.6 653,787 - +0.7 653,810 + -0.0 653,832 + -0.4 653,832 + +0.5 653,832 + -0.2 653,875 + ompR MCAODC_03250 0.13 -0.9 653,888 - ompR MCAODC_03250 0.15 -1.4 653,890 + ompR MCAODC_03250 0.15 +0.8 653,890 + ompR MCAODC_03250 0.15 -0.3 653,891 - ompR MCAODC_03250 0.15 -1.5 653,993 - ompR MCAODC_03250 0.29 -0.4 654,191 + ompR MCAODC_03250 0.57 -2.0 654,192 - ompR MCAODC_03250 0.57 +0.4 654,192 - ompR MCAODC_03250 0.57 +0.7 654,192 - ompR MCAODC_03250 0.57 -0.2 654,192 - ompR MCAODC_03250 0.57 +0.3 654,192 - ompR MCAODC_03250 0.57 -2.4 654,192 - ompR MCAODC_03250 0.57 -0.3 654,192 - ompR MCAODC_03250 0.57 -1.9 654,192 - ompR MCAODC_03250 0.57 +0.1 654,298 + ompR MCAODC_03250 0.72 +0.7 654,330 + ompR MCAODC_03250 0.77 -0.9 654,330 + ompR MCAODC_03250 0.77 -0.0 654,330 + ompR MCAODC_03250 0.77 +1.2 654,331 - ompR MCAODC_03250 0.77 -0.6 654,369 + ompR MCAODC_03250 0.82 +1.1 654,377 - ompR MCAODC_03250 0.84 +1.0 654,411 + ompR MCAODC_03250 0.88 +0.7 654,427 + +0.7 654,428 - -1.0 654,428 - +0.6 654,454 - -1.3 654,496 + -0.5 654,533 + -0.2 654,534 - +0.2 654,534 - +0.5 654,534 - -1.3 654,612 - -0.5 654,732 + -0.2 654,781 - -1.4 654,899 + -0.4 654,900 - +1.9 655,005 - yjcS MCAODC_03255 0.11 -0.4 655,005 - yjcS MCAODC_03255 0.11 +1.1 655,050 + yjcS MCAODC_03255 0.13 -0.2 655,051 - yjcS MCAODC_03255 0.13 -0.4 655,061 + yjcS MCAODC_03255 0.14 +0.6 655,158 + yjcS MCAODC_03255 0.19 +1.0 655,158 + yjcS MCAODC_03255 0.19 +0.3 655,159 - yjcS MCAODC_03255 0.19 -1.7 655,178 + yjcS MCAODC_03255 0.20 +0.7 655,185 - yjcS MCAODC_03255 0.20 -1.1 655,185 - yjcS MCAODC_03255 0.20 -0.0 655,190 + yjcS MCAODC_03255 0.20 -0.4 655,190 + yjcS MCAODC_03255 0.20 -1.3 655,191 - yjcS MCAODC_03255 0.21 +0.8 655,191 - yjcS MCAODC_03255 0.21 -1.6 655,191 - yjcS MCAODC_03255 0.21 -0.2 655,191 - yjcS MCAODC_03255 0.21 -1.3 655,218 - yjcS MCAODC_03255 0.22 +0.5 655,218 - yjcS MCAODC_03255 0.22 +0.9 655,272 + yjcS MCAODC_03255 0.25 -0.9 655,273 - yjcS MCAODC_03255 0.25 -0.5 655,314 + yjcS MCAODC_03255 0.27 -0.0 655,314 + yjcS MCAODC_03255 0.27 -0.1 655,314 + yjcS MCAODC_03255 0.27 -0.7 655,315 - yjcS MCAODC_03255 0.27 -0.5 655,339 - yjcS MCAODC_03255 0.28 +0.5 655,339 - yjcS MCAODC_03255 0.28 +0.1 655,359 - yjcS MCAODC_03255 0.29 +0.3 655,359 - yjcS MCAODC_03255 0.29 +0.0 655,359 - yjcS MCAODC_03255 0.29 +0.8 655,359 - yjcS MCAODC_03255 0.29 -1.4 655,377 - yjcS MCAODC_03255 0.30 -1.4 655,476 + yjcS MCAODC_03255 0.35 +0.7 655,483 - yjcS MCAODC_03255 0.35 +0.4 655,483 - yjcS MCAODC_03255 0.35 -0.5 655,524 - yjcS MCAODC_03255 0.37 +0.7 655,578 - yjcS MCAODC_03255 0.40 +0.7 655,583 + yjcS MCAODC_03255 0.40 +1.2 655,677 + yjcS MCAODC_03255 0.45 -1.0 655,677 + yjcS MCAODC_03255 0.45 -0.5 655,677 + yjcS MCAODC_03255 0.45 -1.2 655,677 + yjcS MCAODC_03255 0.45 -1.2 655,677 + yjcS MCAODC_03255 0.45 -1.3 655,677 + yjcS MCAODC_03255 0.45 +0.1 655,677 + yjcS MCAODC_03255 0.45 +0.9 655,678 - yjcS MCAODC_03255 0.45 +0.5 655,678 - yjcS MCAODC_03255 0.45 -0.3 655,678 - yjcS MCAODC_03255 0.45 -0.2 655,678 - yjcS MCAODC_03255 0.45 -0.4 655,678 - yjcS MCAODC_03255 0.45 +0.8 655,704 - yjcS MCAODC_03255 0.46 +0.9 655,724 + yjcS MCAODC_03255 0.47 +0.0 655,724 + yjcS MCAODC_03255 0.47 -1.0 655,725 - yjcS MCAODC_03255 0.47 +2.0 655,740 + yjcS MCAODC_03255 0.48 +1.0 655,741 - yjcS MCAODC_03255 0.48 -1.5 655,808 + yjcS MCAODC_03255 0.52 +1.6 655,809 - yjcS MCAODC_03255 0.52 -0.7 655,809 - yjcS MCAODC_03255 0.52 +0.6 655,831 + yjcS MCAODC_03255 0.53 -2.1 655,839 - yjcS MCAODC_03255 0.53 +0.6 655,874 + yjcS MCAODC_03255 0.55 -0.2 655,875 - yjcS MCAODC_03255 0.55 -0.3 655,884 + yjcS MCAODC_03255 0.55 +0.9 655,884 + yjcS MCAODC_03255 0.55 -1.1 655,885 - yjcS MCAODC_03255 0.55 -0.1 655,885 - yjcS MCAODC_03255 0.55 -1.3 655,886 + yjcS MCAODC_03255 0.56 +0.2 655,887 - yjcS MCAODC_03255 0.56 +0.9 655,908 - yjcS MCAODC_03255 0.57 -2.5 655,982 + yjcS MCAODC_03255 0.60 -1.1 655,982 + yjcS MCAODC_03255 0.60 +0.6 655,982 + yjcS MCAODC_03255 0.60 -0.4 655,983 - yjcS MCAODC_03255 0.60 +0.6 656,007 - yjcS MCAODC_03255 0.62 +0.7 656,007 - yjcS MCAODC_03255 0.62 +0.4 656,026 - yjcS MCAODC_03255 0.63 +0.9 656,028 + yjcS MCAODC_03255 0.63 -0.4 656,028 + yjcS MCAODC_03255 0.63 -1.1 656,061 + yjcS MCAODC_03255 0.64 -1.0 656,062 - yjcS MCAODC_03255 0.64 -0.2 656,062 - yjcS MCAODC_03255 0.64 +0.5 656,062 - yjcS MCAODC_03255 0.64 -0.0 656,063 + yjcS MCAODC_03255 0.64 -0.9 656,063 + yjcS MCAODC_03255 0.64 +0.6 656,063 + yjcS MCAODC_03255 0.64 +1.0 656,064 - yjcS MCAODC_03255 0.65 +0.5 656,064 - yjcS MCAODC_03255 0.65 -0.4 656,064 - yjcS MCAODC_03255 0.65 -0.1 656,079 + yjcS MCAODC_03255 0.65 -0.1 656,082 + yjcS MCAODC_03255 0.65 +0.5 656,082 + yjcS MCAODC_03255 0.65 +0.7 656,083 - yjcS MCAODC_03255 0.65 +0.3 656,083 - yjcS MCAODC_03255 0.65 +0.4 656,122 + yjcS MCAODC_03255 0.67 -0.8 656,122 + yjcS MCAODC_03255 0.67 +0.4 656,123 - yjcS MCAODC_03255 0.67 -0.0 656,123 - yjcS MCAODC_03255 0.67 -0.1 656,140 - yjcS MCAODC_03255 0.68 -0.5 656,140 - yjcS MCAODC_03255 0.68 +0.5 656,140 - yjcS MCAODC_03255 0.68 -1.5 656,195 + yjcS MCAODC_03255 0.71 -0.2 656,196 - yjcS MCAODC_03255 0.71 +0.1 656,196 - yjcS MCAODC_03255 0.71 -0.9 656,227 + yjcS MCAODC_03255 0.73 +0.4 656,227 + yjcS MCAODC_03255 0.73 -0.9 656,228 - yjcS MCAODC_03255 0.73 +0.3 656,228 - yjcS MCAODC_03255 0.73 -1.9 656,340 + yjcS MCAODC_03255 0.78 +0.4 656,341 - yjcS MCAODC_03255 0.78 +0.5 656,378 + yjcS MCAODC_03255 0.80 +0.3 656,378 + yjcS MCAODC_03255 0.80 +0.4 656,378 + yjcS MCAODC_03255 0.80 +0.1 656,378 + yjcS MCAODC_03255 0.80 -1.9 656,378 + yjcS MCAODC_03255 0.80 +0.1 656,378 + yjcS MCAODC_03255 0.80 -0.4 656,379 - yjcS MCAODC_03255 0.80 -0.4 656,379 - yjcS MCAODC_03255 0.80 +0.2 656,379 - yjcS MCAODC_03255 0.80 -0.2 656,493 - yjcS MCAODC_03255 0.86 -0.2 656,511 - yjcS MCAODC_03255 0.87 -0.3 656,511 - yjcS MCAODC_03255 0.87 +0.6 656,511 - yjcS MCAODC_03255 0.87 +0.6 656,558 + yjcS MCAODC_03255 0.89 +1.0 656,558 + yjcS MCAODC_03255 0.89 -0.6 656,558 + yjcS MCAODC_03255 0.89 +0.2 656,559 - yjcS MCAODC_03255 0.89 -0.1 656,559 - yjcS MCAODC_03255 0.89 +1.2 656,562 + yjcS MCAODC_03255 0.90 -0.6 656,567 + yjcS MCAODC_03255 0.90 -0.2 656,568 - yjcS MCAODC_03255 0.90 -3.2 656,568 - yjcS MCAODC_03255 0.90 +0.1 656,601 + +1.4 656,601 + -1.2 656,601 + +0.7 656,602 - -0.8 656,602 - +1.0 656,851 + +1.0 656,852 - -0.2 656,852 - -2.3 657,171 + ytcA MCAODC_03260 0.70 -0.1 657,256 - -0.4 657,256 - -0.4 657,256 - -0.0 657,279 + -0.8 657,321 - +0.2 657,387 + mdtN MCAODC_03265 0.11 +1.6 657,387 + mdtN MCAODC_03265 0.11 -0.1 657,388 - mdtN MCAODC_03265 0.11 +0.8 657,388 - mdtN MCAODC_03265 0.11 +1.3 657,388 - mdtN MCAODC_03265 0.11 -0.9 657,388 - mdtN MCAODC_03265 0.11 -0.4 657,388 - mdtN MCAODC_03265 0.11 +0.7 657,397 + mdtN MCAODC_03265 0.12 +0.6 657,397 + mdtN MCAODC_03265 0.12 -0.3 657,397 + mdtN MCAODC_03265 0.12 -2.1 657,397 + mdtN MCAODC_03265 0.12 +0.1 657,397 + mdtN MCAODC_03265 0.12 +0.7 657,397 + mdtN MCAODC_03265 0.12 -1.4 657,398 - mdtN MCAODC_03265 0.12 +0.5 657,398 - mdtN MCAODC_03265 0.12 -0.6 657,412 - mdtN MCAODC_03265 0.14 -0.1 657,412 - mdtN MCAODC_03265 0.14 +0.8 657,449 + mdtN MCAODC_03265 0.17 +0.5 657,449 + mdtN MCAODC_03265 0.17 +0.2 657,449 + mdtN MCAODC_03265 0.17 +1.8 657,450 - mdtN MCAODC_03265 0.17 -0.3 657,450 - mdtN MCAODC_03265 0.17 -0.0 657,576 + mdtN MCAODC_03265 0.30 +0.4 657,576 + mdtN MCAODC_03265 0.30 +1.0 657,576 + mdtN MCAODC_03265 0.30 -0.5 657,675 + mdtN MCAODC_03265 0.39 +0.3 657,675 + mdtN MCAODC_03265 0.39 +0.1 657,675 + mdtN MCAODC_03265 0.39 +0.4 657,675 + mdtN MCAODC_03265 0.39 +0.1 657,675 + mdtN MCAODC_03265 0.39 +0.2 657,675 + mdtN MCAODC_03265 0.39 +0.1 657,676 - mdtN MCAODC_03265 0.39 +0.2 657,676 - mdtN MCAODC_03265 0.39 -1.3 657,676 - mdtN MCAODC_03265 0.39 -1.2 657,676 - mdtN MCAODC_03265 0.39 -0.2 657,680 + mdtN MCAODC_03265 0.40 -0.1
Or see this region's nucleotide sequence