Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoB and deoA are separated by 51 nucleotides deoA and deoC are separated by 126 nucleotides
MCAODC_01735: deoB - phosphopentomutase, at 336,973 to 338,196
deoB
MCAODC_01740: deoA - thymidine phosphorylase, at 338,248 to 339,570
deoA
MCAODC_01745: deoC - deoxyribose-phosphate aldolase, at 339,697 to 340,476
deoC
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 337.314 kb on + strand, within deoB at 337.314 kb on + strand, within deoB at 337.315 kb on - strand, within deoB at 337.406 kb on + strand, within deoB at 337.406 kb on + strand, within deoB at 337.406 kb on + strand, within deoB at 337.407 kb on - strand, within deoB at 337.407 kb on - strand, within deoB at 337.407 kb on - strand, within deoB at 337.407 kb on - strand, within deoB at 337.580 kb on + strand, within deoB at 337.626 kb on - strand, within deoB at 337.690 kb on - strand, within deoB at 337.692 kb on - strand, within deoB at 337.775 kb on + strand, within deoB at 337.851 kb on - strand, within deoB at 337.851 kb on - strand, within deoB at 337.905 kb on + strand, within deoB at 337.905 kb on + strand, within deoB at 338.055 kb on + strand, within deoB at 338.056 kb on - strand, within deoB at 338.148 kb on + strand at 338.178 kb on + strand at 338.179 kb on - strand at 338.179 kb on - strand at 338.181 kb on + strand at 338.181 kb on + strand at 338.181 kb on + strand at 338.181 kb on + strand at 338.182 kb on - strand at 338.182 kb on - strand at 338.196 kb on + strand at 338.196 kb on + strand at 338.197 kb on - strand at 338.197 kb on - strand at 338.207 kb on + strand at 338.241 kb on + strand at 338.241 kb on + strand at 338.242 kb on - strand at 338.244 kb on - strand at 338.308 kb on - strand at 338.308 kb on - strand at 338.308 kb on - strand at 338.308 kb on - strand at 338.392 kb on + strand, within deoA at 338.436 kb on - strand, within deoA at 338.540 kb on + strand, within deoA at 338.540 kb on + strand, within deoA at 338.541 kb on - strand, within deoA at 338.573 kb on + strand, within deoA at 338.573 kb on + strand, within deoA at 338.574 kb on - strand, within deoA at 338.574 kb on - strand, within deoA at 338.582 kb on + strand, within deoA at 338.582 kb on + strand, within deoA at 338.626 kb on - strand, within deoA at 338.626 kb on - strand, within deoA at 338.626 kb on - strand, within deoA at 338.650 kb on - strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.931 kb on - strand, within deoA at 338.940 kb on + strand, within deoA at 339.054 kb on + strand, within deoA at 339.055 kb on - strand, within deoA at 339.132 kb on + strand, within deoA at 339.136 kb on - strand, within deoA at 339.213 kb on + strand, within deoA at 339.214 kb on - strand, within deoA at 339.214 kb on - strand, within deoA at 339.214 kb on - strand, within deoA at 339.246 kb on + strand, within deoA at 339.246 kb on + strand, within deoA at 339.246 kb on + strand, within deoA at 339.248 kb on + strand, within deoA at 339.420 kb on + strand, within deoA at 339.421 kb on - strand, within deoA at 339.472 kb on - strand at 339.573 kb on + strand at 339.574 kb on - strand at 339.593 kb on + strand at 339.594 kb on - strand at 339.628 kb on - strand at 339.642 kb on + strand at 339.643 kb on - strand at 339.646 kb on + strand at 339.646 kb on + strand at 339.656 kb on - strand at 339.685 kb on - strand at 339.685 kb on - strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.695 kb on - strand at 339.695 kb on - strand at 339.695 kb on - strand at 339.698 kb on + strand at 339.698 kb on + strand at 339.698 kb on + strand at 339.699 kb on - strand at 339.699 kb on - strand at 339.701 kb on + strand at 339.702 kb on - strand at 339.702 kb on - strand at 339.718 kb on - strand at 339.780 kb on - strand, within deoC at 339.833 kb on + strand, within deoC at 339.834 kb on - strand, within deoC at 339.896 kb on - strand, within deoC at 339.904 kb on - strand, within deoC at 339.904 kb on - strand, within deoC at 340.076 kb on - strand, within deoC at 340.076 kb on - strand, within deoC at 340.102 kb on - strand, within deoC at 340.102 kb on - strand, within deoC at 340.332 kb on - strand, within deoC at 340.335 kb on + strand, within deoC at 340.335 kb on + strand, within deoC at 340.335 kb on + strand, within deoC at 340.335 kb on + strand, within deoC at 340.336 kb on - strand, within deoC at 340.336 kb on - strand, within deoC at 340.342 kb on - strand, within deoC at 340.342 kb on - strand, within deoC at 340.342 kb on - strand, within deoC at 340.532 kb on + strand at 340.540 kb on - strand at 340.559 kb on + strand at 340.559 kb on + strand at 340.560 kb on - strand at 340.560 kb on - strand at 340.561 kb on + strand at 340.561 kb on + strand at 340.561 kb on + strand at 340.561 kb on + strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 337,314 + deoB MCAODC_01735 0.28 +0.8 337,314 + deoB MCAODC_01735 0.28 -0.3 337,315 - deoB MCAODC_01735 0.28 -0.3 337,406 + deoB MCAODC_01735 0.35 -0.6 337,406 + deoB MCAODC_01735 0.35 +0.7 337,406 + deoB MCAODC_01735 0.35 +1.5 337,407 - deoB MCAODC_01735 0.35 +0.4 337,407 - deoB MCAODC_01735 0.35 -0.8 337,407 - deoB MCAODC_01735 0.35 -0.5 337,407 - deoB MCAODC_01735 0.35 -0.7 337,580 + deoB MCAODC_01735 0.50 -0.1 337,626 - deoB MCAODC_01735 0.53 +0.5 337,690 - deoB MCAODC_01735 0.59 -2.5 337,692 - deoB MCAODC_01735 0.59 +0.7 337,775 + deoB MCAODC_01735 0.66 -0.2 337,851 - deoB MCAODC_01735 0.72 -1.5 337,851 - deoB MCAODC_01735 0.72 +1.3 337,905 + deoB MCAODC_01735 0.76 -0.8 337,905 + deoB MCAODC_01735 0.76 +2.3 338,055 + deoB MCAODC_01735 0.88 -1.1 338,056 - deoB MCAODC_01735 0.88 -1.4 338,148 + +2.5 338,178 + +1.8 338,179 - +0.5 338,179 - +0.9 338,181 + +1.4 338,181 + +1.2 338,181 + -0.9 338,181 + +3.5 338,182 - -0.2 338,182 - +1.2 338,196 + +0.2 338,196 + +0.4 338,197 - -0.5 338,197 - +0.6 338,207 + +0.5 338,241 + +1.1 338,241 + -0.3 338,242 - +0.6 338,244 - +0.0 338,308 - +0.3 338,308 - +0.1 338,308 - +0.4 338,308 - -0.5 338,392 + deoA MCAODC_01740 0.11 -1.1 338,436 - deoA MCAODC_01740 0.14 -1.1 338,540 + deoA MCAODC_01740 0.22 -1.1 338,540 + deoA MCAODC_01740 0.22 +3.0 338,541 - deoA MCAODC_01740 0.22 -0.1 338,573 + deoA MCAODC_01740 0.25 -0.3 338,573 + deoA MCAODC_01740 0.25 -0.7 338,574 - deoA MCAODC_01740 0.25 -0.6 338,574 - deoA MCAODC_01740 0.25 -0.3 338,582 + deoA MCAODC_01740 0.25 +0.0 338,582 + deoA MCAODC_01740 0.25 +0.2 338,626 - deoA MCAODC_01740 0.29 +2.0 338,626 - deoA MCAODC_01740 0.29 -1.0 338,626 - deoA MCAODC_01740 0.29 +0.3 338,650 - deoA MCAODC_01740 0.30 -1.6 338,718 + deoA MCAODC_01740 0.36 +0.2 338,718 + deoA MCAODC_01740 0.36 -0.3 338,718 + deoA MCAODC_01740 0.36 +0.1 338,718 + deoA MCAODC_01740 0.36 +0.5 338,718 + deoA MCAODC_01740 0.36 +0.8 338,718 + deoA MCAODC_01740 0.36 +1.2 338,719 - deoA MCAODC_01740 0.36 +0.1 338,719 - deoA MCAODC_01740 0.36 +1.5 338,719 - deoA MCAODC_01740 0.36 -1.6 338,719 - deoA MCAODC_01740 0.36 +0.8 338,931 - deoA MCAODC_01740 0.52 +0.6 338,940 + deoA MCAODC_01740 0.52 +1.2 339,054 + deoA MCAODC_01740 0.61 +0.4 339,055 - deoA MCAODC_01740 0.61 -0.7 339,132 + deoA MCAODC_01740 0.67 -1.7 339,136 - deoA MCAODC_01740 0.67 -1.7 339,213 + deoA MCAODC_01740 0.73 -0.9 339,214 - deoA MCAODC_01740 0.73 -0.0 339,214 - deoA MCAODC_01740 0.73 +0.2 339,214 - deoA MCAODC_01740 0.73 +0.0 339,246 + deoA MCAODC_01740 0.75 -0.6 339,246 + deoA MCAODC_01740 0.75 -0.2 339,246 + deoA MCAODC_01740 0.75 -0.7 339,248 + deoA MCAODC_01740 0.76 +1.4 339,420 + deoA MCAODC_01740 0.89 +0.3 339,421 - deoA MCAODC_01740 0.89 +1.9 339,472 - +0.5 339,573 + +1.2 339,574 - +1.0 339,593 + -1.1 339,594 - -0.1 339,628 - -0.5 339,642 + -0.7 339,643 - -0.9 339,646 + +1.3 339,646 + +0.3 339,656 - +0.7 339,685 - +0.2 339,685 - -1.0 339,694 + +0.2 339,694 + -0.9 339,694 + +1.0 339,694 + +0.1 339,694 + +1.4 339,694 + -0.9 339,695 - -1.3 339,695 - +1.3 339,695 - -0.3 339,698 + -0.2 339,698 + +1.6 339,698 + -0.1 339,699 - +0.2 339,699 - -0.8 339,701 + +2.1 339,702 - +1.5 339,702 - -0.4 339,718 - +0.3 339,780 - deoC MCAODC_01745 0.11 -1.5 339,833 + deoC MCAODC_01745 0.17 +0.6 339,834 - deoC MCAODC_01745 0.18 -0.3 339,896 - deoC MCAODC_01745 0.26 -0.1 339,904 - deoC MCAODC_01745 0.27 -0.3 339,904 - deoC MCAODC_01745 0.27 +0.5 340,076 - deoC MCAODC_01745 0.49 +0.7 340,076 - deoC MCAODC_01745 0.49 +2.2 340,102 - deoC MCAODC_01745 0.52 -0.7 340,102 - deoC MCAODC_01745 0.52 -0.3 340,332 - deoC MCAODC_01745 0.81 +0.4 340,335 + deoC MCAODC_01745 0.82 +0.7 340,335 + deoC MCAODC_01745 0.82 +0.7 340,335 + deoC MCAODC_01745 0.82 -0.3 340,335 + deoC MCAODC_01745 0.82 -1.2 340,336 - deoC MCAODC_01745 0.82 -0.7 340,336 - deoC MCAODC_01745 0.82 +1.0 340,342 - deoC MCAODC_01745 0.83 +0.6 340,342 - deoC MCAODC_01745 0.83 +0.1 340,342 - deoC MCAODC_01745 0.83 -0.2 340,532 + +1.7 340,540 - -1.0 340,559 + -0.3 340,559 + -1.0 340,560 - -0.1 340,560 - -1.4 340,561 + -1.6 340,561 + -0.0 340,561 + -0.4 340,561 + +0.2 340,562 - -0.5 340,562 - -0.5 340,562 - -0.4 340,562 - +0.6 340,562 - +1.2 340,562 - -0.3
Or see this region's nucleotide sequence