Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaA and mokC are separated by 528 nucleotides mokC and dnaJ are separated by 103 nucleotides dnaJ and dnaK are separated by 88 nucleotides
MCAODC_01545: nhaA - Na+/H+ antiporter NhaA, at 299,867 to 301,033
nhaA
MCAODC_01555: mokC - Regulatory protein MokC, at 301,562 to 301,771
mokC
MCAODC_01560: dnaJ - molecular chaperone DnaJ, at 301,875 to 303,005
dnaJ
MCAODC_01570: dnaK - molecular chaperone DnaK, at 303,094 to 305,010
dnaK
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 300.985 kb on + strand at 300.985 kb on + strand at 300.985 kb on + strand at 301.039 kb on - strand at 301.057 kb on + strand at 301.058 kb on - strand at 301.058 kb on - strand at 301.069 kb on - strand at 301.076 kb on + strand at 301.109 kb on + strand at 301.207 kb on + strand at 301.208 kb on - strand at 301.218 kb on - strand at 301.228 kb on + strand at 301.252 kb on - strand at 301.252 kb on - strand at 301.264 kb on + strand at 301.272 kb on - strand at 301.318 kb on + strand at 301.338 kb on - strand at 301.354 kb on + strand at 301.354 kb on + strand at 301.370 kb on - strand at 301.381 kb on + strand at 301.457 kb on + strand at 301.457 kb on + strand at 301.459 kb on + strand at 301.459 kb on + strand at 301.534 kb on - strand at 301.559 kb on + strand at 301.559 kb on + strand at 301.560 kb on - strand at 301.561 kb on + strand at 301.562 kb on - strand at 301.562 kb on - strand at 301.562 kb on - strand at 301.576 kb on + strand at 301.576 kb on + strand at 301.577 kb on - strand at 301.577 kb on - strand at 301.577 kb on - strand at 301.630 kb on + strand, within mokC at 301.630 kb on + strand, within mokC at 301.630 kb on + strand, within mokC at 301.630 kb on + strand, within mokC at 301.630 kb on + strand, within mokC at 301.631 kb on - strand, within mokC at 301.631 kb on - strand, within mokC at 301.631 kb on - strand, within mokC at 301.631 kb on - strand, within mokC at 301.663 kb on + strand, within mokC at 301.664 kb on - strand, within mokC at 301.664 kb on - strand, within mokC at 301.675 kb on - strand, within mokC at 301.769 kb on + strand at 301.818 kb on - strand at 301.818 kb on - strand at 301.839 kb on + strand at 302.801 kb on - strand, within dnaJ at 302.810 kb on - strand, within dnaJ at 302.846 kb on - strand, within dnaJ at 302.933 kb on - strand at 302.977 kb on - strand at 302.990 kb on - strand at 303.073 kb on - strand at 303.073 kb on - strand at 303.073 kb on - strand at 303.073 kb on - strand at 303.076 kb on - strand at 303.448 kb on - strand, within dnaK
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 300,985 + +2.8 300,985 + +0.3 300,985 + +0.1 301,039 - -1.3 301,057 + +0.4 301,058 - -0.2 301,058 - -0.5 301,069 - +0.6 301,076 + +0.1 301,109 + -1.6 301,207 + +1.1 301,208 - +0.5 301,218 - -0.5 301,228 + -0.1 301,252 - +0.4 301,252 - -0.3 301,264 + +0.6 301,272 - -0.8 301,318 + +1.4 301,338 - +0.7 301,354 + -0.8 301,354 + +0.2 301,370 - -0.7 301,381 + -1.6 301,457 + -0.0 301,457 + -1.8 301,459 + -0.5 301,459 + +0.9 301,534 - -1.5 301,559 + -1.1 301,559 + -0.4 301,560 - -1.1 301,561 + +0.4 301,562 - -0.7 301,562 - -0.5 301,562 - +0.1 301,576 + -0.2 301,576 + -0.0 301,577 - -0.6 301,577 - -0.6 301,577 - +1.7 301,630 + mokC MCAODC_01555 0.32 +0.4 301,630 + mokC MCAODC_01555 0.32 +0.0 301,630 + mokC MCAODC_01555 0.32 -0.2 301,630 + mokC MCAODC_01555 0.32 -1.0 301,630 + mokC MCAODC_01555 0.32 +1.4 301,631 - mokC MCAODC_01555 0.33 -0.6 301,631 - mokC MCAODC_01555 0.33 -0.2 301,631 - mokC MCAODC_01555 0.33 -0.1 301,631 - mokC MCAODC_01555 0.33 +0.1 301,663 + mokC MCAODC_01555 0.48 +0.6 301,664 - mokC MCAODC_01555 0.49 +0.7 301,664 - mokC MCAODC_01555 0.49 -0.2 301,675 - mokC MCAODC_01555 0.54 -1.2 301,769 + -1.8 301,818 - -0.2 301,818 - -0.4 301,839 + +0.2 302,801 - dnaJ MCAODC_01560 0.82 +0.7 302,810 - dnaJ MCAODC_01560 0.83 -0.3 302,846 - dnaJ MCAODC_01560 0.86 -0.3 302,933 - -1.1 302,977 - +2.8 302,990 - +0.2 303,073 - +0.0 303,073 - -0.2 303,073 - -0.1 303,073 - +0.7 303,076 - +0.2 303,448 - dnaK MCAODC_01570 0.18 -0.3
Or see this region's nucleotide sequence