Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapD and yaeH are separated by 314 nucleotides yaeH and cdaR are separated by 88 nucleotides cdaR and degP are separated by 154 nucleotides
MCAODC_00755: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 127,777 to 128,601
dapD
MCAODC_00760: yaeH - DUF3461 domain-containing protein, at 128,916 to 129,302
yaeH
MCAODC_00765: cdaR - DNA-binding transcriptional regulator CdaR, at 129,391 to 130,548
cdaR
MCAODC_00770: degP - serine endoprotease DegP, at 130,703 to 132,127
degP
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.606 kb on - strand at 128.653 kb on + strand at 128.664 kb on - strand at 128.689 kb on - strand at 128.689 kb on - strand at 128.722 kb on + strand at 128.723 kb on - strand at 128.740 kb on + strand at 128.740 kb on + strand at 128.741 kb on - strand at 128.749 kb on + strand at 128.766 kb on + strand at 128.778 kb on - strand at 128.778 kb on - strand at 128.787 kb on - strand at 128.812 kb on - strand at 128.880 kb on + strand at 128.915 kb on + strand at 128.916 kb on - strand at 128.916 kb on - strand at 128.919 kb on + strand at 128.920 kb on - strand at 128.920 kb on - strand at 128.945 kb on + strand at 128.945 kb on + strand at 128.946 kb on - strand at 129.013 kb on - strand, within yaeH at 129.059 kb on + strand, within yaeH at 129.060 kb on - strand, within yaeH at 129.060 kb on - strand, within yaeH at 129.060 kb on - strand, within yaeH at 129.078 kb on - strand, within yaeH at 129.113 kb on + strand, within yaeH at 129.147 kb on + strand, within yaeH at 129.147 kb on + strand, within yaeH at 129.203 kb on + strand, within yaeH at 129.209 kb on + strand, within yaeH at 129.226 kb on + strand, within yaeH at 129.226 kb on + strand, within yaeH at 129.226 kb on + strand, within yaeH at 129.226 kb on + strand, within yaeH at 129.226 kb on + strand, within yaeH at 129.227 kb on - strand, within yaeH at 129.227 kb on - strand, within yaeH at 129.227 kb on - strand, within yaeH at 129.227 kb on - strand, within yaeH at 129.275 kb on + strand at 129.296 kb on + strand at 129.387 kb on + strand at 129.387 kb on + strand at 129.393 kb on - strand at 129.422 kb on + strand at 129.422 kb on + strand at 129.422 kb on + strand at 129.423 kb on - strand at 129.423 kb on - strand at 129.423 kb on - strand at 129.423 kb on - strand at 129.423 kb on - strand at 129.475 kb on + strand at 129.477 kb on + strand at 129.483 kb on + strand at 129.484 kb on - strand at 129.501 kb on + strand at 129.502 kb on - strand at 129.504 kb on + strand at 129.505 kb on - strand at 129.505 kb on - strand at 129.505 kb on - strand at 129.514 kb on - strand, within cdaR at 129.676 kb on + strand, within cdaR at 129.676 kb on + strand, within cdaR at 129.677 kb on - strand, within cdaR at 129.677 kb on - strand, within cdaR at 129.677 kb on - strand, within cdaR at 129.698 kb on + strand, within cdaR at 129.699 kb on - strand, within cdaR at 129.758 kb on + strand, within cdaR at 129.758 kb on + strand, within cdaR at 129.791 kb on + strand, within cdaR at 129.791 kb on + strand, within cdaR at 129.792 kb on - strand, within cdaR at 129.864 kb on + strand, within cdaR at 129.878 kb on - strand, within cdaR at 129.878 kb on - strand, within cdaR at 129.878 kb on - strand, within cdaR at 129.954 kb on + strand, within cdaR at 129.954 kb on + strand, within cdaR at 129.954 kb on + strand, within cdaR at 129.954 kb on + strand, within cdaR at 129.955 kb on - strand, within cdaR at 129.955 kb on - strand, within cdaR at 129.957 kb on + strand, within cdaR at 129.957 kb on + strand, within cdaR at 129.957 kb on + strand, within cdaR at 129.969 kb on + strand, within cdaR at 129.970 kb on - strand, within cdaR at 129.970 kb on - strand, within cdaR at 130.102 kb on - strand, within cdaR at 130.238 kb on + strand, within cdaR at 130.239 kb on - strand, within cdaR at 130.239 kb on - strand, within cdaR at 130.242 kb on + strand, within cdaR at 130.242 kb on + strand, within cdaR at 130.243 kb on - strand, within cdaR at 130.243 kb on - strand, within cdaR at 130.276 kb on + strand, within cdaR at 130.277 kb on - strand, within cdaR at 130.309 kb on + strand, within cdaR at 130.309 kb on + strand, within cdaR at 130.310 kb on - strand, within cdaR at 130.314 kb on + strand, within cdaR at 130.315 kb on - strand, within cdaR at 130.315 kb on - strand, within cdaR at 130.315 kb on - strand, within cdaR at 130.315 kb on - strand, within cdaR at 130.420 kb on - strand, within cdaR at 130.420 kb on - strand, within cdaR at 130.444 kb on - strand at 130.465 kb on + strand at 130.465 kb on + strand at 130.465 kb on + strand at 130.466 kb on - strand at 130.466 kb on - strand at 130.466 kb on - strand at 130.466 kb on - strand at 130.497 kb on + strand at 130.497 kb on + strand at 130.498 kb on - strand at 130.498 kb on - strand at 130.510 kb on - strand at 130.548 kb on + strand at 130.548 kb on + strand at 130.549 kb on - strand at 130.549 kb on - strand at 130.549 kb on - strand at 130.560 kb on + strand at 130.572 kb on - strand at 130.576 kb on + strand at 130.577 kb on - strand at 130.584 kb on + strand at 130.584 kb on + strand at 130.585 kb on - strand at 130.588 kb on + strand at 130.588 kb on + strand at 130.588 kb on + strand at 130.588 kb on + strand at 130.588 kb on + strand at 130.589 kb on - strand at 130.589 kb on - strand at 130.593 kb on + strand at 130.613 kb on + strand at 130.631 kb on + strand at 130.632 kb on - strand at 130.632 kb on - strand at 130.632 kb on - strand at 130.660 kb on + strand at 130.704 kb on + strand at 130.719 kb on + strand at 130.719 kb on + strand at 130.720 kb on - strand at 131.015 kb on - strand, within degP at 131.059 kb on + strand, within degP at 131.060 kb on - strand, within degP at 131.060 kb on - strand, within degP at 131.248 kb on + strand, within degP at 131.249 kb on - strand, within degP at 131.380 kb on + strand, within degP at 131.425 kb on + strand, within degP at 131.520 kb on - strand, within degP at 131.546 kb on - strand, within degP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 128,606 - -0.2 128,653 + +0.1 128,664 - +0.9 128,689 - -0.7 128,689 - +0.1 128,722 + +0.4 128,723 - +0.6 128,740 + -0.1 128,740 + -1.0 128,741 - +1.5 128,749 + +0.1 128,766 + -0.8 128,778 - -0.7 128,778 - -0.3 128,787 - +0.8 128,812 - +0.2 128,880 + -1.0 128,915 + +0.2 128,916 - +0.2 128,916 - -0.6 128,919 + +1.1 128,920 - +0.1 128,920 - -0.2 128,945 + -0.1 128,945 + +0.4 128,946 - +0.7 129,013 - yaeH MCAODC_00760 0.25 -0.2 129,059 + yaeH MCAODC_00760 0.37 -0.8 129,060 - yaeH MCAODC_00760 0.37 -0.0 129,060 - yaeH MCAODC_00760 0.37 -1.9 129,060 - yaeH MCAODC_00760 0.37 -0.2 129,078 - yaeH MCAODC_00760 0.42 +0.4 129,113 + yaeH MCAODC_00760 0.51 +0.4 129,147 + yaeH MCAODC_00760 0.60 -0.9 129,147 + yaeH MCAODC_00760 0.60 -1.1 129,203 + yaeH MCAODC_00760 0.74 -0.1 129,209 + yaeH MCAODC_00760 0.76 -0.3 129,226 + yaeH MCAODC_00760 0.80 +0.7 129,226 + yaeH MCAODC_00760 0.80 +0.6 129,226 + yaeH MCAODC_00760 0.80 -1.2 129,226 + yaeH MCAODC_00760 0.80 +0.2 129,226 + yaeH MCAODC_00760 0.80 +0.2 129,227 - yaeH MCAODC_00760 0.80 +1.8 129,227 - yaeH MCAODC_00760 0.80 -0.5 129,227 - yaeH MCAODC_00760 0.80 -1.3 129,227 - yaeH MCAODC_00760 0.80 +0.6 129,275 + +2.1 129,296 + +1.2 129,387 + +0.8 129,387 + -1.9 129,393 - -0.0 129,422 + +0.3 129,422 + +0.5 129,422 + +2.4 129,423 - +0.0 129,423 - +0.9 129,423 - +0.8 129,423 - +0.5 129,423 - -1.8 129,475 + -0.6 129,477 + +0.3 129,483 + -0.9 129,484 - -0.8 129,501 + -0.7 129,502 - +0.1 129,504 + +1.1 129,505 - -0.7 129,505 - -1.4 129,505 - -0.4 129,514 - cdaR MCAODC_00765 0.11 +0.5 129,676 + cdaR MCAODC_00765 0.25 -0.5 129,676 + cdaR MCAODC_00765 0.25 +0.1 129,677 - cdaR MCAODC_00765 0.25 -1.0 129,677 - cdaR MCAODC_00765 0.25 -0.4 129,677 - cdaR MCAODC_00765 0.25 -1.8 129,698 + cdaR MCAODC_00765 0.27 -2.8 129,699 - cdaR MCAODC_00765 0.27 -1.5 129,758 + cdaR MCAODC_00765 0.32 -1.0 129,758 + cdaR MCAODC_00765 0.32 +2.3 129,791 + cdaR MCAODC_00765 0.35 +0.7 129,791 + cdaR MCAODC_00765 0.35 +0.9 129,792 - cdaR MCAODC_00765 0.35 +1.1 129,864 + cdaR MCAODC_00765 0.41 -0.9 129,878 - cdaR MCAODC_00765 0.42 +0.6 129,878 - cdaR MCAODC_00765 0.42 -1.4 129,878 - cdaR MCAODC_00765 0.42 +0.3 129,954 + cdaR MCAODC_00765 0.49 -1.2 129,954 + cdaR MCAODC_00765 0.49 -0.8 129,954 + cdaR MCAODC_00765 0.49 +1.7 129,954 + cdaR MCAODC_00765 0.49 +0.2 129,955 - cdaR MCAODC_00765 0.49 +1.3 129,955 - cdaR MCAODC_00765 0.49 -0.4 129,957 + cdaR MCAODC_00765 0.49 -0.2 129,957 + cdaR MCAODC_00765 0.49 +1.3 129,957 + cdaR MCAODC_00765 0.49 +0.5 129,969 + cdaR MCAODC_00765 0.50 +2.3 129,970 - cdaR MCAODC_00765 0.50 -0.2 129,970 - cdaR MCAODC_00765 0.50 +0.4 130,102 - cdaR MCAODC_00765 0.61 +1.3 130,238 + cdaR MCAODC_00765 0.73 +1.7 130,239 - cdaR MCAODC_00765 0.73 -0.7 130,239 - cdaR MCAODC_00765 0.73 +0.1 130,242 + cdaR MCAODC_00765 0.73 -0.1 130,242 + cdaR MCAODC_00765 0.73 +1.1 130,243 - cdaR MCAODC_00765 0.74 +0.6 130,243 - cdaR MCAODC_00765 0.74 -0.5 130,276 + cdaR MCAODC_00765 0.76 +0.2 130,277 - cdaR MCAODC_00765 0.77 -0.9 130,309 + cdaR MCAODC_00765 0.79 +0.7 130,309 + cdaR MCAODC_00765 0.79 +1.7 130,310 - cdaR MCAODC_00765 0.79 -0.3 130,314 + cdaR MCAODC_00765 0.80 -0.7 130,315 - cdaR MCAODC_00765 0.80 -0.3 130,315 - cdaR MCAODC_00765 0.80 -0.7 130,315 - cdaR MCAODC_00765 0.80 +0.0 130,315 - cdaR MCAODC_00765 0.80 -0.9 130,420 - cdaR MCAODC_00765 0.89 +2.7 130,420 - cdaR MCAODC_00765 0.89 -0.1 130,444 - -0.5 130,465 + -1.3 130,465 + -0.8 130,465 + -0.1 130,466 - +0.1 130,466 - -0.6 130,466 - +0.3 130,466 - -1.2 130,497 + -0.1 130,497 + +0.7 130,498 - +0.3 130,498 - -0.5 130,510 - -0.5 130,548 + +0.5 130,548 + -1.3 130,549 - -0.1 130,549 - -0.1 130,549 - +0.0 130,560 + +0.2 130,572 - -0.7 130,576 + -0.7 130,577 - +0.3 130,584 + -1.8 130,584 + -0.9 130,585 - +0.0 130,588 + -0.6 130,588 + +0.8 130,588 + +0.8 130,588 + +0.3 130,588 + +0.4 130,589 - -2.2 130,589 - -0.5 130,593 + -1.2 130,613 + +1.4 130,631 + -1.5 130,632 - +0.2 130,632 - +0.8 130,632 - -0.4 130,660 + -0.4 130,704 + +1.5 130,719 + -1.0 130,719 + -0.6 130,720 - +1.1 131,015 - degP MCAODC_00770 0.22 -1.2 131,059 + degP MCAODC_00770 0.25 +1.4 131,060 - degP MCAODC_00770 0.25 +0.3 131,060 - degP MCAODC_00770 0.25 +0.4 131,248 + degP MCAODC_00770 0.38 +0.3 131,249 - degP MCAODC_00770 0.38 +1.1 131,380 + degP MCAODC_00770 0.48 +0.7 131,425 + degP MCAODC_00770 0.51 -0.6 131,520 - degP MCAODC_00770 0.57 -1.0 131,546 - degP MCAODC_00770 0.59 -0.7
Or see this region's nucleotide sequence