Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04540

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
1,279,841	+		ABI39_RS04535	0.69	-1.3
1,279,847	+		ABI39_RS04535	0.69	-0.2
1,279,848	-		ABI39_RS04535	0.69	+0.3
1,279,992	-		ABI39_RS04535	0.74	-2.0
1,280,139	-		ABI39_RS04535	0.79	+0.7
1,280,139	-		ABI39_RS04535	0.79	+0.4
1,280,182	-		ABI39_RS04535	0.80	-0.9
1,280,257	-		ABI39_RS04535	0.82	+0.8
1,280,403	-		ABI39_RS04535	0.87	-0.8
1,280,403	-		ABI39_RS04535	0.87	-1.7
1,280,441	-		ABI39_RS04535	0.88	+0.3
1,280,449	+		ABI39_RS04535	0.89	-0.0
1,280,514	+				+0.3
1,280,515	-				+1.5
1,280,598	+				+0.2
1,280,599	-				-1.8
1,280,661	+				-0.4
1,280,662	-				-0.3
1,280,704	-				-2.1
1,280,704	-				+0.7
1,280,749	+				+0.8
1,280,842	+				-0.8
1,280,847	-				-0.5
1,280,847	-				-0.5
1,280,901	-				-0.5
1,281,123	+		ABI39_RS04540	0.19	+0.2
1,281,139	-		ABI39_RS04540	0.21	+0.7
1,281,155	-		ABI39_RS04540	0.22	+0.5
1,281,237	-		ABI39_RS04540	0.27	+0.5
1,281,344	-		ABI39_RS04540	0.34	-2.1
1,281,344	-		ABI39_RS04540	0.34	+4.1
1,281,346	-		ABI39_RS04540	0.34	-2.3
1,281,465	-		ABI39_RS04540	0.42	+0.2
1,281,569	+		ABI39_RS04540	0.49	-0.5
1,281,570	-		ABI39_RS04540	0.49	-0.3
1,281,570	-		ABI39_RS04540	0.49	+2.6
1,281,596	-		ABI39_RS04540	0.51	+1.1
1,281,621	+		ABI39_RS04540	0.52	-0.2
1,281,621	+		ABI39_RS04540	0.52	+0.8
1,281,622	-		ABI39_RS04540	0.52	+0.4
1,281,639	+		ABI39_RS04540	0.53	-1.1
1,281,817	-		ABI39_RS04540	0.65	-0.8
1,281,838	-		ABI39_RS04540	0.67	-0.0
1,281,838	-		ABI39_RS04540	0.67	-0.8
1,281,841	+		ABI39_RS04540	0.67	+0.6
1,281,841	+		ABI39_RS04540	0.67	-1.1
1,281,841	+		ABI39_RS04540	0.67	-2.3
1,281,842	-		ABI39_RS04540	0.67	-1.5
1,281,851	+		ABI39_RS04540	0.67	+0.2
1,281,871	+		ABI39_RS04540	0.69	-0.9
1,281,871	+		ABI39_RS04540	0.69	+1.6
1,281,872	-		ABI39_RS04540	0.69	-0.3
1,281,896	-		ABI39_RS04540	0.70	-0.2
1,281,908	-		ABI39_RS04540	0.71	-0.6
1,281,909	+		ABI39_RS04540	0.71	+0.7
1,282,028	+		ABI39_RS04540	0.79	-0.9
1,282,080	+		ABI39_RS04540	0.83	-0.0
1,282,100	+		ABI39_RS04540	0.84	+0.2
1,282,100	+		ABI39_RS04540	0.84	-2.2
1,282,368	+				-0.8
1,282,369	-				-0.5
1,282,369	-				-1.4
1,282,586	+		ABI39_RS04545	0.45	-1.9
1,282,593	-		ABI39_RS04545	0.48	+1.1
1,282,703	-		ABI39_RS04545	0.87	-1.0
1,282,707	-		ABI39_RS04545	0.88	+1.0
1,282,792	+				-0.6
1,282,793	-				+0.1
1,282,867	+		ABI39_RS04550	0.22	-0.9
1,282,954	+		ABI39_RS04550	0.36	-1.8
1,283,022	-		ABI39_RS04550	0.47	-2.3
1,283,079	+		ABI39_RS04550	0.57	-0.3
1,283,079	+		ABI39_RS04550	0.57	-1.3
1,283,161	+		ABI39_RS04550	0.70	+0.2
1,283,164	+		ABI39_RS04550	0.71	+0.5
1,283,190	-		ABI39_RS04550	0.75	-1.4
1,283,219	+		ABI39_RS04550	0.80	-1.0
1,283,291	-				+0.2
1,283,338	-				-0.5