Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03240 and ABI39_RS03245 are separated by 23 nucleotides ABI39_RS03245 and ABI39_RS03250 are separated by 43 nucleotides ABI39_RS03250 and ABI39_RS03255 are separated by 6 nucleotides ABI39_RS03255 and ABI39_RS03260 are separated by 26 nucleotides
ABI39_RS03240: ABI39_RS03240 - AraC family transcriptional regulator, at 940,028 to 940,957
_RS03240
ABI39_RS03245: ABI39_RS03245 - aldo/keto reductase, at 940,981 to 941,829
_RS03245
ABI39_RS03250: ABI39_RS03250 - aldo/keto reductase, at 941,873 to 942,736
_RS03250
ABI39_RS03255: ABI39_RS03255 - SDR family oxidoreductase, at 942,743 to 943,492
_RS03255
ABI39_RS03260: ABI39_RS03260 - NAD(P)H-dependent oxidoreductase, at 943,519 to 944,076
_RS03260
Position (kb) 941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 940.991 kb on + strand at 941.276 kb on - strand, within ABI39_RS03245 at 941.314 kb on + strand, within ABI39_RS03245 at 941.430 kb on - strand, within ABI39_RS03245 at 941.766 kb on + strand at 941.787 kb on - strand at 941.872 kb on + strand at 941.916 kb on + strand at 941.928 kb on + strand at 941.997 kb on + strand, within ABI39_RS03250 at 942.354 kb on + strand, within ABI39_RS03250 at 942.355 kb on - strand, within ABI39_RS03250 at 942.395 kb on + strand, within ABI39_RS03250 at 942.401 kb on - strand, within ABI39_RS03250 at 942.608 kb on - strand, within ABI39_RS03250 at 942.728 kb on - strand at 942.735 kb on - strand at 942.747 kb on - strand at 942.748 kb on + strand at 942.808 kb on + strand at 942.843 kb on + strand, within ABI39_RS03255 at 942.844 kb on - strand, within ABI39_RS03255 at 942.853 kb on - strand, within ABI39_RS03255 at 942.908 kb on + strand, within ABI39_RS03255 at 942.949 kb on + strand, within ABI39_RS03255 at 942.958 kb on + strand, within ABI39_RS03255 at 943.120 kb on - strand, within ABI39_RS03255 at 943.194 kb on - strand, within ABI39_RS03255 at 943.194 kb on - strand, within ABI39_RS03255 at 943.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 940,991 + -1.3 941,276 - ABI39_RS03245 0.35 -0.6 941,314 + ABI39_RS03245 0.39 -0.1 941,430 - ABI39_RS03245 0.53 -2.7 941,766 + -1.5 941,787 - +0.8 941,872 + -2.0 941,916 + -0.8 941,928 + -1.0 941,997 + ABI39_RS03250 0.14 +0.7 942,354 + ABI39_RS03250 0.56 +1.0 942,355 - ABI39_RS03250 0.56 +0.2 942,395 + ABI39_RS03250 0.60 +0.8 942,401 - ABI39_RS03250 0.61 +0.1 942,608 - ABI39_RS03250 0.85 -0.8 942,728 - -0.2 942,735 - +0.0 942,747 - -0.0 942,748 + +0.2 942,808 + -0.0 942,843 + ABI39_RS03255 0.13 -0.5 942,844 - ABI39_RS03255 0.13 -0.6 942,853 - ABI39_RS03255 0.15 -1.9 942,908 + ABI39_RS03255 0.22 +0.4 942,949 + ABI39_RS03255 0.27 +0.8 942,958 + ABI39_RS03255 0.29 -0.6 943,120 - ABI39_RS03255 0.50 -3.6 943,194 - ABI39_RS03255 0.60 -1.6 943,194 - ABI39_RS03255 0.60 +0.1 943,483 - +2.0
Or see this region's nucleotide sequence