Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01340 and ABI39_RS01345 overlap by 4 nucleotides ABI39_RS01345 and ABI39_RS01350 are separated by 27 nucleotides
ABI39_RS01340: ABI39_RS01340 - DUF3440 domain-containing protein, at 413,785 to 415,086
_RS01340
ABI39_RS01345: ABI39_RS01345 - ParB-like nuclease domain-containing protein, at 415,083 to 415,595
_RS01345
ABI39_RS01350: ABI39_RS01350 - hypothetical protein, at 415,623 to 417,410
_RS01350
Position (kb) 415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 414.175 kb on - strand, within ABI39_RS01340 at 414.196 kb on + strand, within ABI39_RS01340 at 414.197 kb on - strand, within ABI39_RS01340 at 414.336 kb on + strand, within ABI39_RS01340 at 414.356 kb on - strand, within ABI39_RS01340 at 414.383 kb on + strand, within ABI39_RS01340 at 414.411 kb on + strand, within ABI39_RS01340 at 414.415 kb on + strand, within ABI39_RS01340 at 414.415 kb on + strand, within ABI39_RS01340 at 414.415 kb on + strand, within ABI39_RS01340 at 414.438 kb on - strand, within ABI39_RS01340 at 414.448 kb on + strand, within ABI39_RS01340 at 414.494 kb on - strand, within ABI39_RS01340 at 414.694 kb on + strand, within ABI39_RS01340 at 414.711 kb on + strand, within ABI39_RS01340 at 414.715 kb on + strand, within ABI39_RS01340 at 414.825 kb on + strand, within ABI39_RS01340 at 414.958 kb on + strand at 414.966 kb on + strand at 414.999 kb on - strand at 415.158 kb on - strand, within ABI39_RS01345 at 415.223 kb on + strand, within ABI39_RS01345 at 415.238 kb on - strand, within ABI39_RS01345 at 415.248 kb on - strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.264 kb on + strand, within ABI39_RS01345 at 415.266 kb on + strand, within ABI39_RS01345 at 415.267 kb on - strand, within ABI39_RS01345 at 415.267 kb on - strand, within ABI39_RS01345 at 415.442 kb on - strand, within ABI39_RS01345 at 415.540 kb on + strand, within ABI39_RS01345 at 415.593 kb on + strand at 415.731 kb on - strand at 415.843 kb on - strand, within ABI39_RS01350 at 415.891 kb on + strand, within ABI39_RS01350 at 415.892 kb on - strand, within ABI39_RS01350 at 415.987 kb on + strand, within ABI39_RS01350 at 416.111 kb on - strand, within ABI39_RS01350 at 416.132 kb on + strand, within ABI39_RS01350 at 416.155 kb on + strand, within ABI39_RS01350 at 416.189 kb on + strand, within ABI39_RS01350 at 416.226 kb on - strand, within ABI39_RS01350 at 416.264 kb on + strand, within ABI39_RS01350 at 416.265 kb on - strand, within ABI39_RS01350 at 416.289 kb on - strand, within ABI39_RS01350 at 416.333 kb on + strand, within ABI39_RS01350 at 416.334 kb on - strand, within ABI39_RS01350 at 416.408 kb on + strand, within ABI39_RS01350 at 416.566 kb on - strand, within ABI39_RS01350 at 416.568 kb on + strand, within ABI39_RS01350
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 414,175 - ABI39_RS01340 0.30 +0.3 414,196 + ABI39_RS01340 0.32 +1.5 414,197 - ABI39_RS01340 0.32 +0.1 414,336 + ABI39_RS01340 0.42 -0.7 414,356 - ABI39_RS01340 0.44 -0.5 414,383 + ABI39_RS01340 0.46 +1.2 414,411 + ABI39_RS01340 0.48 -0.3 414,415 + ABI39_RS01340 0.48 -1.1 414,415 + ABI39_RS01340 0.48 +0.1 414,415 + ABI39_RS01340 0.48 -0.6 414,438 - ABI39_RS01340 0.50 +0.6 414,448 + ABI39_RS01340 0.51 +0.4 414,494 - ABI39_RS01340 0.54 +0.9 414,694 + ABI39_RS01340 0.70 -1.9 414,711 + ABI39_RS01340 0.71 +0.1 414,715 + ABI39_RS01340 0.71 -2.2 414,825 + ABI39_RS01340 0.80 -1.4 414,958 + -0.4 414,966 + -0.9 414,999 - +0.2 415,158 - ABI39_RS01345 0.15 +1.9 415,223 + ABI39_RS01345 0.27 +0.8 415,238 - ABI39_RS01345 0.30 -0.6 415,248 - ABI39_RS01345 0.32 -2.6 415,264 + ABI39_RS01345 0.35 -0.9 415,264 + ABI39_RS01345 0.35 -1.4 415,264 + ABI39_RS01345 0.35 -1.9 415,264 + ABI39_RS01345 0.35 -1.8 415,266 + ABI39_RS01345 0.36 -0.7 415,267 - ABI39_RS01345 0.36 +1.7 415,267 - ABI39_RS01345 0.36 -0.4 415,442 - ABI39_RS01345 0.70 +0.1 415,540 + ABI39_RS01345 0.89 -1.3 415,593 + +0.3 415,731 - +0.9 415,843 - ABI39_RS01350 0.12 +0.6 415,891 + ABI39_RS01350 0.15 -0.2 415,892 - ABI39_RS01350 0.15 +0.4 415,987 + ABI39_RS01350 0.20 +0.9 416,111 - ABI39_RS01350 0.27 -0.6 416,132 + ABI39_RS01350 0.28 -0.8 416,155 + ABI39_RS01350 0.30 -0.1 416,189 + ABI39_RS01350 0.32 +1.1 416,226 - ABI39_RS01350 0.34 -0.4 416,264 + ABI39_RS01350 0.36 -0.8 416,265 - ABI39_RS01350 0.36 -0.6 416,289 - ABI39_RS01350 0.37 +0.9 416,333 + ABI39_RS01350 0.40 -0.8 416,334 - ABI39_RS01350 0.40 +0.4 416,408 + ABI39_RS01350 0.44 +0.7 416,566 - ABI39_RS01350 0.53 +0.4 416,568 + ABI39_RS01350 0.53 +0.8
Or see this region's nucleotide sequence