Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00180 and ABI39_RS00185 are separated by 349 nucleotides ABI39_RS00185 and ABI39_RS00190 are separated by 12 nucleotides
ABI39_RS00180: ABI39_RS00180 - glycoside hydrolase family 43 protein, at 51,894 to 53,630
_RS00180
ABI39_RS00185: ABI39_RS00185 - glycoside hydrolase family 43 protein, at 53,980 to 54,951
_RS00185
ABI39_RS00190: ABI39_RS00190 - endo-1,4-beta-xylanase, at 54,964 to 56,091
_RS00190
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 53.165 kb on + strand, within ABI39_RS00180 at 53.167 kb on + strand, within ABI39_RS00180 at 53.171 kb on - strand, within ABI39_RS00180 at 53.180 kb on + strand, within ABI39_RS00180 at 53.270 kb on + strand, within ABI39_RS00180 at 53.332 kb on + strand, within ABI39_RS00180 at 53.337 kb on - strand, within ABI39_RS00180 at 53.337 kb on - strand, within ABI39_RS00180 at 53.484 kb on - strand at 53.558 kb on + strand at 53.642 kb on + strand at 53.647 kb on + strand at 53.683 kb on + strand at 53.686 kb on - strand at 53.703 kb on - strand at 53.993 kb on - strand at 54.110 kb on + strand, within ABI39_RS00185 at 54.192 kb on + strand, within ABI39_RS00185 at 54.504 kb on + strand, within ABI39_RS00185 at 54.506 kb on + strand, within ABI39_RS00185 at 54.507 kb on - strand, within ABI39_RS00185 at 54.509 kb on + strand, within ABI39_RS00185 at 54.509 kb on + strand, within ABI39_RS00185 at 54.546 kb on + strand, within ABI39_RS00185 at 54.657 kb on - strand, within ABI39_RS00185 at 54.657 kb on - strand, within ABI39_RS00185 at 54.660 kb on + strand, within ABI39_RS00185 at 54.662 kb on + strand, within ABI39_RS00185 at 54.666 kb on - strand, within ABI39_RS00185 at 54.783 kb on + strand, within ABI39_RS00185 at 54.866 kb on + strand at 54.866 kb on + strand at 54.915 kb on - strand at 55.225 kb on - strand, within ABI39_RS00190 at 55.225 kb on - strand, within ABI39_RS00190 at 55.333 kb on - strand, within ABI39_RS00190 at 55.386 kb on + strand, within ABI39_RS00190 at 55.484 kb on + strand, within ABI39_RS00190 at 55.530 kb on + strand, within ABI39_RS00190 at 55.562 kb on + strand, within ABI39_RS00190 at 55.627 kb on + strand, within ABI39_RS00190 at 55.629 kb on + strand, within ABI39_RS00190 at 55.641 kb on - strand, within ABI39_RS00190 at 55.653 kb on + strand, within ABI39_RS00190 at 55.890 kb on + strand, within ABI39_RS00190 at 55.946 kb on - strand, within ABI39_RS00190
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 53,165 + ABI39_RS00180 0.73 -0.9 53,167 + ABI39_RS00180 0.73 -0.6 53,171 - ABI39_RS00180 0.74 -0.2 53,180 + ABI39_RS00180 0.74 -2.5 53,270 + ABI39_RS00180 0.79 +1.1 53,332 + ABI39_RS00180 0.83 -1.0 53,337 - ABI39_RS00180 0.83 +1.2 53,337 - ABI39_RS00180 0.83 +0.1 53,484 - -1.1 53,558 + -2.8 53,642 + -0.7 53,647 + -0.4 53,683 + -0.4 53,686 - +1.1 53,703 - -0.5 53,993 - -0.7 54,110 + ABI39_RS00185 0.13 -1.9 54,192 + ABI39_RS00185 0.22 +0.2 54,504 + ABI39_RS00185 0.54 +0.7 54,506 + ABI39_RS00185 0.54 +0.2 54,507 - ABI39_RS00185 0.54 -0.9 54,509 + ABI39_RS00185 0.54 -0.3 54,509 + ABI39_RS00185 0.54 +0.3 54,546 + ABI39_RS00185 0.58 +0.0 54,657 - ABI39_RS00185 0.70 -0.6 54,657 - ABI39_RS00185 0.70 +0.5 54,660 + ABI39_RS00185 0.70 -0.4 54,662 + ABI39_RS00185 0.70 -0.1 54,666 - ABI39_RS00185 0.71 -0.5 54,783 + ABI39_RS00185 0.83 +0.6 54,866 + -0.1 54,866 + -0.4 54,915 - +0.3 55,225 - ABI39_RS00190 0.23 +0.7 55,225 - ABI39_RS00190 0.23 +0.3 55,333 - ABI39_RS00190 0.33 -0.8 55,386 + ABI39_RS00190 0.37 +0.6 55,484 + ABI39_RS00190 0.46 -1.3 55,530 + ABI39_RS00190 0.50 +0.5 55,562 + ABI39_RS00190 0.53 +0.9 55,627 + ABI39_RS00190 0.59 +0.8 55,629 + ABI39_RS00190 0.59 +0.3 55,641 - ABI39_RS00190 0.60 +0.2 55,653 + ABI39_RS00190 0.61 -1.5 55,890 + ABI39_RS00190 0.82 -0.8 55,946 - ABI39_RS00190 0.87 +0.9
Or see this region's nucleotide sequence