Strain Fitness in Erwinia amylovora T8 around OLJFJH_01780

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01770 and OLJFJH_01775 are separated by 23 nucleotidesOLJFJH_01775 and OLJFJH_01780 are separated by 23 nucleotidesOLJFJH_01780 and OLJFJH_01785 are separated by 22 nucleotides OLJFJH_01770: OLJFJH_01770 - hypothetical protein, at 308,456 to 309,523 _01770 OLJFJH_01775: OLJFJH_01775 - hypothetical protein, at 309,547 to 309,981 _01775 OLJFJH_01780: OLJFJH_01780 - flagellar biosynthesis protein FlgH, at 310,005 to 311,072 _01780 OLJFJH_01785: OLJFJH_01785 - type VI secretion system tip protein VgrG, at 311,095 to 313,059 _01785 Position (kb) 310 311 312Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 309.022 kb on - strand, within OLJFJH_01770at 309.057 kb on + strand, within OLJFJH_01770at 309.057 kb on + strand, within OLJFJH_01770at 309.058 kb on - strand, within OLJFJH_01770at 309.058 kb on - strand, within OLJFJH_01770at 309.084 kb on + strand, within OLJFJH_01770at 309.100 kb on + strand, within OLJFJH_01770at 309.101 kb on - strand, within OLJFJH_01770at 309.101 kb on - strand, within OLJFJH_01770at 309.101 kb on - strand, within OLJFJH_01770at 309.191 kb on - strand, within OLJFJH_01770at 309.220 kb on + strand, within OLJFJH_01770at 309.221 kb on - strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.384 kb on - strand, within OLJFJH_01770at 309.436 kb on + strandat 309.436 kb on + strandat 309.438 kb on + strandat 309.438 kb on + strandat 309.438 kb on + strandat 309.438 kb on + strandat 310.185 kb on + strand, within OLJFJH_01780at 310.199 kb on + strand, within OLJFJH_01780at 310.199 kb on + strand, within OLJFJH_01780at 310.200 kb on - strand, within OLJFJH_01780at 310.229 kb on + strand, within OLJFJH_01780at 310.230 kb on - strand, within OLJFJH_01780at 310.298 kb on - strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.308 kb on - strand, within OLJFJH_01780at 310.388 kb on + strand, within OLJFJH_01780at 310.388 kb on + strand, within OLJFJH_01780at 310.388 kb on + strand, within OLJFJH_01780at 310.389 kb on - strand, within OLJFJH_01780at 310.389 kb on - strand, within OLJFJH_01780at 310.390 kb on + strand, within OLJFJH_01780at 310.390 kb on + strand, within OLJFJH_01780at 310.390 kb on + strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.393 kb on - strand, within OLJFJH_01780at 310.393 kb on - strand, within OLJFJH_01780at 310.393 kb on - strand, within OLJFJH_01780at 310.454 kb on - strand, within OLJFJH_01780at 310.493 kb on - strand, within OLJFJH_01780at 310.561 kb on + strand, within OLJFJH_01780at 310.561 kb on + strand, within OLJFJH_01780at 310.561 kb on + strand, within OLJFJH_01780at 310.561 kb on + strand, within OLJFJH_01780at 310.561 kb on + strand, within OLJFJH_01780at 310.561 kb on + strand, within OLJFJH_01780at 310.561 kb on + strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.562 kb on - strand, within OLJFJH_01780at 310.592 kb on + strand, within OLJFJH_01780at 310.593 kb on - strand, within OLJFJH_01780at 310.593 kb on - strand, within OLJFJH_01780at 310.593 kb on - strand, within OLJFJH_01780at 310.593 kb on - strand, within OLJFJH_01780at 310.593 kb on - strand, within OLJFJH_01780at 310.755 kb on + strand, within OLJFJH_01780at 310.755 kb on + strand, within OLJFJH_01780at 310.953 kb on + strand, within OLJFJH_01780at 311.173 kb on + strandat 311.173 kb on + strandat 311.174 kb on - strandat 311.206 kb on - strandat 311.225 kb on - strandat 311.225 kb on - strandat 311.303 kb on + strand, within OLJFJH_01785at 311.304 kb on - strand, within OLJFJH_01785at 311.304 kb on - strand, within OLJFJH_01785at 311.304 kb on - strand, within OLJFJH_01785at 311.308 kb on - strand, within OLJFJH_01785at 311.595 kb on + strand, within OLJFJH_01785at 311.628 kb on + strand, within OLJFJH_01785at 311.628 kb on + strand, within OLJFJH_01785at 311.629 kb on - strand, within OLJFJH_01785at 311.653 kb on - strand, within OLJFJH_01785

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-7
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309,022 - OLJFJH_01770 0.53 -0.7
309,057 + OLJFJH_01770 0.56 +0.3
309,057 + OLJFJH_01770 0.56 +0.0
309,058 - OLJFJH_01770 0.56 +1.2
309,058 - OLJFJH_01770 0.56 -0.8
309,084 + OLJFJH_01770 0.59 +0.4
309,100 + OLJFJH_01770 0.60 +0.1
309,101 - OLJFJH_01770 0.60 -0.3
309,101 - OLJFJH_01770 0.60 +0.2
309,101 - OLJFJH_01770 0.60 -0.2
309,191 - OLJFJH_01770 0.69 -0.6
309,220 + OLJFJH_01770 0.72 +0.5
309,221 - OLJFJH_01770 0.72 +5.2
309,319 + OLJFJH_01770 0.81 -1.8
309,319 + OLJFJH_01770 0.81 +0.7
309,319 + OLJFJH_01770 0.81 -0.4
309,319 + OLJFJH_01770 0.81 -1.5
309,320 - OLJFJH_01770 0.81 +0.7
309,320 - OLJFJH_01770 0.81 -1.0
309,320 - OLJFJH_01770 0.81 -0.5
309,320 - OLJFJH_01770 0.81 -0.4
309,384 - OLJFJH_01770 0.87 -0.3
309,436 + +1.1
309,436 + -2.1
309,438 + -0.2
309,438 + -1.4
309,438 + -0.8
309,438 + +0.5
310,185 + OLJFJH_01780 0.17 -0.3
310,199 + OLJFJH_01780 0.18 +0.2
310,199 + OLJFJH_01780 0.18 +1.6
310,200 - OLJFJH_01780 0.18 -0.1
310,229 + OLJFJH_01780 0.21 -0.3
310,230 - OLJFJH_01780 0.21 +1.2
310,298 - OLJFJH_01780 0.27 -0.5
310,305 + OLJFJH_01780 0.28 +1.3
310,305 + OLJFJH_01780 0.28 +4.2
310,305 + OLJFJH_01780 0.28 +1.2
310,305 + OLJFJH_01780 0.28 +0.8
310,305 + OLJFJH_01780 0.28 -1.0
310,305 + OLJFJH_01780 0.28 +0.5
310,305 + OLJFJH_01780 0.28 +2.5
310,305 + OLJFJH_01780 0.28 -0.3
310,306 - OLJFJH_01780 0.28 -0.2
310,306 - OLJFJH_01780 0.28 -0.6
310,306 - OLJFJH_01780 0.28 -0.5
310,306 - OLJFJH_01780 0.28 -0.2
310,306 - OLJFJH_01780 0.28 -1.0
310,306 - OLJFJH_01780 0.28 +0.4
310,306 - OLJFJH_01780 0.28 -0.9
310,308 - OLJFJH_01780 0.28 -0.1
310,388 + OLJFJH_01780 0.36 -0.1
310,388 + OLJFJH_01780 0.36 +1.4
310,388 + OLJFJH_01780 0.36 +1.3
310,389 - OLJFJH_01780 0.36 -0.9
310,389 - OLJFJH_01780 0.36 -0.1
310,390 + OLJFJH_01780 0.36 +1.3
310,390 + OLJFJH_01780 0.36 +1.5
310,390 + OLJFJH_01780 0.36 +0.3
310,391 - OLJFJH_01780 0.36 +0.0
310,391 - OLJFJH_01780 0.36 +1.5
310,391 - OLJFJH_01780 0.36 +2.6
310,391 - OLJFJH_01780 0.36 +0.9
310,392 + OLJFJH_01780 0.36 +0.7
310,392 + OLJFJH_01780 0.36 +1.1
310,392 + OLJFJH_01780 0.36 +0.3
310,392 + OLJFJH_01780 0.36 +0.8
310,393 - OLJFJH_01780 0.36 +0.6
310,393 - OLJFJH_01780 0.36 -0.1
310,393 - OLJFJH_01780 0.36 -0.1
310,454 - OLJFJH_01780 0.42 -1.2
310,493 - OLJFJH_01780 0.46 +0.4
310,561 + OLJFJH_01780 0.52 +4.6
310,561 + OLJFJH_01780 0.52 +1.5
310,561 + OLJFJH_01780 0.52 +0.3
310,561 + OLJFJH_01780 0.52 +0.2
310,561 + OLJFJH_01780 0.52 +2.0
310,561 + OLJFJH_01780 0.52 +0.3
310,561 + OLJFJH_01780 0.52 +0.9
310,562 - OLJFJH_01780 0.52 +2.8
310,562 - OLJFJH_01780 0.52 -0.2
310,562 - OLJFJH_01780 0.52 +0.1
310,562 - OLJFJH_01780 0.52 +0.7
310,562 - OLJFJH_01780 0.52 +0.8
310,562 - OLJFJH_01780 0.52 -1.2
310,562 - OLJFJH_01780 0.52 -1.0
310,562 - OLJFJH_01780 0.52 +4.6
310,592 + OLJFJH_01780 0.55 +0.1
310,593 - OLJFJH_01780 0.55 -1.4
310,593 - OLJFJH_01780 0.55 +0.2
310,593 - OLJFJH_01780 0.55 -1.1
310,593 - OLJFJH_01780 0.55 -0.0
310,593 - OLJFJH_01780 0.55 +0.0
310,755 + OLJFJH_01780 0.70 -0.0
310,755 + OLJFJH_01780 0.70 +1.2
310,953 + OLJFJH_01780 0.89 +1.0
311,173 + +0.1
311,173 + -0.5
311,174 - -0.2
311,206 - +1.2
311,225 - +0.5
311,225 - +1.1
311,303 + OLJFJH_01785 0.11 +0.3
311,304 - OLJFJH_01785 0.11 +0.0
311,304 - OLJFJH_01785 0.11 +0.2
311,304 - OLJFJH_01785 0.11 +0.3
311,308 - OLJFJH_01785 0.11 +0.2
311,595 + OLJFJH_01785 0.25 +0.1
311,628 + OLJFJH_01785 0.27 +0.4
311,628 + OLJFJH_01785 0.27 -0.0
311,629 - OLJFJH_01785 0.27 -0.4
311,653 - OLJFJH_01785 0.28 +0.5

Or see this region's nucleotide sequence