Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS16075 and A4249_RS16080 are separated by 74 nucleotides A4249_RS16080 and A4249_RS16085 are separated by 78 nucleotides A4249_RS16085 and A4249_RS16090 are separated by 32 nucleotides A4249_RS16090 and A4249_RS16095 are separated by 64 nucleotides
A4249_RS16075: A4249_RS16075 - RNA polymerase factor sigma-54, at 3,237,372 to 3,238,871
_RS16075
A4249_RS16080: A4249_RS16080 - ribosome-associated translation inhibitor RaiA, at 3,238,946 to 3,239,590
_RS16080
A4249_RS16085: A4249_RS16085 - PTS IIA-like nitrogen regulatory protein PtsN, at 3,239,669 to 3,240,136
_RS16085
A4249_RS16090: A4249_RS16090 - DUF1150 domain-containing protein, at 3,240,169 to 3,240,419
_RS16090
A4249_RS16095: A4249_RS16095 - Hsp20 family protein, at 3,240,484 to 3,240,921
_RS16095
Position (kb)
3238
3239
3240 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3238.326 kb on + strand, within A4249_RS16075 at 3238.327 kb on - strand, within A4249_RS16075 at 3238.327 kb on - strand, within A4249_RS16075 at 3238.439 kb on + strand, within A4249_RS16075 at 3238.440 kb on - strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.589 kb on + strand, within A4249_RS16075 at 3238.589 kb on + strand, within A4249_RS16075 at 3238.589 kb on + strand, within A4249_RS16075 at 3238.940 kb on - strand at 3238.940 kb on - strand at 3238.940 kb on - strand at 3239.037 kb on - strand, within A4249_RS16080 at 3239.037 kb on - strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.516 kb on + strand, within A4249_RS16080 at 3239.516 kb on + strand, within A4249_RS16080 at 3239.517 kb on - strand, within A4249_RS16080 at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.667 kb on + strand at 3239.667 kb on + strand at 3239.930 kb on + strand, within A4249_RS16085 at 3239.930 kb on + strand, within A4249_RS16085 at 3239.930 kb on + strand, within A4249_RS16085 at 3239.931 kb on - strand, within A4249_RS16085 at 3239.931 kb on - strand, within A4249_RS16085 at 3240.274 kb on + strand, within A4249_RS16090 at 3240.274 kb on + strand, within A4249_RS16090 at 3240.274 kb on + strand, within A4249_RS16090 at 3240.274 kb on + strand, within A4249_RS16090 at 3240.275 kb on - strand, within A4249_RS16090 at 3240.275 kb on - strand, within A4249_RS16090 at 3240.358 kb on + strand, within A4249_RS16090 at 3240.358 kb on + strand, within A4249_RS16090 at 3240.358 kb on + strand, within A4249_RS16090 at 3240.358 kb on + strand, within A4249_RS16090 at 3240.358 kb on + strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.359 kb on - strand, within A4249_RS16090 at 3240.421 kb on - strand at 3240.421 kb on - strand at 3240.421 kb on - strand at 3240.437 kb on + strand at 3240.437 kb on + strand at 3240.437 kb on + strand at 3240.437 kb on + strand at 3240.438 kb on - strand at 3240.438 kb on - strand at 3240.438 kb on - strand at 3240.438 kb on - strand at 3240.438 kb on - strand at 3240.510 kb on + strand at 3240.510 kb on + strand at 3240.511 kb on - strand at 3240.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 3,238,326 + A4249_RS16075 0.64 -1.4 3,238,327 - A4249_RS16075 0.64 -0.4 3,238,327 - A4249_RS16075 0.64 -0.2 3,238,439 + A4249_RS16075 0.71 +0.6 3,238,440 - A4249_RS16075 0.71 -0.1 3,238,587 + A4249_RS16075 0.81 -1.7 3,238,587 + A4249_RS16075 0.81 +0.8 3,238,587 + A4249_RS16075 0.81 +0.6 3,238,587 + A4249_RS16075 0.81 +0.5 3,238,587 + A4249_RS16075 0.81 +0.2 3,238,587 + A4249_RS16075 0.81 -0.2 3,238,587 + A4249_RS16075 0.81 +1.5 3,238,587 + A4249_RS16075 0.81 +0.2 3,238,587 + A4249_RS16075 0.81 +0.8 3,238,587 + A4249_RS16075 0.81 +0.2 3,238,587 + A4249_RS16075 0.81 +0.2 3,238,587 + A4249_RS16075 0.81 -1.1 3,238,587 + A4249_RS16075 0.81 +0.3 3,238,587 + A4249_RS16075 0.81 +0.7 3,238,588 - A4249_RS16075 0.81 -0.2 3,238,588 - A4249_RS16075 0.81 +0.1 3,238,588 - A4249_RS16075 0.81 +1.5 3,238,588 - A4249_RS16075 0.81 +0.4 3,238,588 - A4249_RS16075 0.81 -0.2 3,238,588 - A4249_RS16075 0.81 -1.5 3,238,588 - A4249_RS16075 0.81 +0.3 3,238,588 - A4249_RS16075 0.81 -0.4 3,238,588 - A4249_RS16075 0.81 +1.0 3,238,588 - A4249_RS16075 0.81 -2.1 3,238,589 + A4249_RS16075 0.81 +0.5 3,238,589 + A4249_RS16075 0.81 +0.9 3,238,589 + A4249_RS16075 0.81 +0.3 3,238,940 - +0.0 3,238,940 - +0.2 3,238,940 - -0.4 3,239,037 - A4249_RS16080 0.14 -1.5 3,239,037 - A4249_RS16080 0.14 +0.8 3,239,425 + A4249_RS16080 0.74 -0.2 3,239,425 + A4249_RS16080 0.74 +0.2 3,239,425 + A4249_RS16080 0.74 +0.3 3,239,425 + A4249_RS16080 0.74 -0.0 3,239,516 + A4249_RS16080 0.88 +0.6 3,239,516 + A4249_RS16080 0.88 +0.6 3,239,517 - A4249_RS16080 0.89 -0.6 3,239,588 + -0.2 3,239,588 + +0.2 3,239,588 + +0.8 3,239,588 + -0.0 3,239,588 + +0.5 3,239,588 + +0.3 3,239,588 + +0.3 3,239,588 + +0.1 3,239,589 - +0.6 3,239,589 - +0.2 3,239,589 - +1.2 3,239,589 - +2.2 3,239,589 - +0.3 3,239,589 - +1.7 3,239,667 + -0.5 3,239,667 + -1.0 3,239,930 + A4249_RS16085 0.56 -0.2 3,239,930 + A4249_RS16085 0.56 +0.3 3,239,930 + A4249_RS16085 0.56 -0.7 3,239,931 - A4249_RS16085 0.56 -0.6 3,239,931 - A4249_RS16085 0.56 -1.3 3,240,274 + A4249_RS16090 0.42 -0.7 3,240,274 + A4249_RS16090 0.42 -0.4 3,240,274 + A4249_RS16090 0.42 -0.3 3,240,274 + A4249_RS16090 0.42 +0.0 3,240,275 - A4249_RS16090 0.42 -0.0 3,240,275 - A4249_RS16090 0.42 +0.3 3,240,358 + A4249_RS16090 0.75 -0.2 3,240,358 + A4249_RS16090 0.75 +0.4 3,240,358 + A4249_RS16090 0.75 -0.8 3,240,358 + A4249_RS16090 0.75 -1.1 3,240,358 + A4249_RS16090 0.75 +0.7 3,240,359 - A4249_RS16090 0.76 +0.5 3,240,359 - A4249_RS16090 0.76 -0.8 3,240,359 - A4249_RS16090 0.76 -0.1 3,240,359 - A4249_RS16090 0.76 +0.3 3,240,359 - A4249_RS16090 0.76 +0.5 3,240,359 - A4249_RS16090 0.76 -2.8 3,240,359 - A4249_RS16090 0.76 -0.7 3,240,359 - A4249_RS16090 0.76 -0.7 3,240,359 - A4249_RS16090 0.76 -0.1 3,240,359 - A4249_RS16090 0.76 +0.3 3,240,421 - -0.6 3,240,421 - -0.1 3,240,421 - -2.2 3,240,437 + -0.6 3,240,437 + +0.8 3,240,437 + -0.0 3,240,437 + -1.4 3,240,438 - +1.0 3,240,438 - -0.7 3,240,438 - -0.5 3,240,438 - +1.1 3,240,438 - +0.5 3,240,510 + -0.1 3,240,510 + -2.0 3,240,511 - -1.3 3,240,511 - +0.2
Or see this region's nucleotide sequence