Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15845 and A4249_RS15850 are separated by 76 nucleotides A4249_RS15850 and A4249_RS15855 are separated by 46 nucleotides A4249_RS15855 and A4249_RS15860 overlap by 4 nucleotides A4249_RS15860 and A4249_RS15865 are separated by 13 nucleotides
A4249_RS15845: A4249_RS15845 - hemerythrin domain-containing protein, at 3,201,156 to 3,201,674
_RS15845
A4249_RS15850: A4249_RS15850 - MgtC/SapB family protein, at 3,201,751 to 3,202,446
_RS15850
A4249_RS15855: A4249_RS15855 - crossover junction endodeoxyribonuclease RuvC, at 3,202,493 to 3,203,011
_RS15855
A4249_RS15860: A4249_RS15860 - Holliday junction branch migration protein RuvA, at 3,203,008 to 3,203,625
_RS15860
A4249_RS15865: A4249_RS15865 - Holliday junction branch migration DNA helicase RuvB, at 3,203,639 to 3,204,670
_RS15865
Position (kb)
3202
3203
3204 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3201.612 kb on + strand, within A4249_RS15845 at 3201.612 kb on + strand, within A4249_RS15845 at 3201.613 kb on - strand, within A4249_RS15845 at 3201.613 kb on - strand, within A4249_RS15845 at 3201.613 kb on - strand, within A4249_RS15845 at 3201.613 kb on - strand, within A4249_RS15845 at 3201.613 kb on - strand, within A4249_RS15845 at 3201.613 kb on - strand, within A4249_RS15845 at 3201.613 kb on - strand, within A4249_RS15845 at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.657 kb on - strand at 3201.763 kb on - strand at 3202.117 kb on + strand, within A4249_RS15850 at 3202.117 kb on + strand, within A4249_RS15850 at 3202.118 kb on - strand, within A4249_RS15850 at 3202.373 kb on + strand, within A4249_RS15850 at 3202.374 kb on - strand, within A4249_RS15850 at 3202.374 kb on - strand, within A4249_RS15850 at 3202.374 kb on - strand, within A4249_RS15850 at 3202.420 kb on + strand at 3202.420 kb on + strand at 3202.420 kb on + strand at 3202.420 kb on + strand at 3202.421 kb on - strand at 3203.084 kb on - strand, within A4249_RS15860
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 3,201,612 + A4249_RS15845 0.88 +0.5 3,201,612 + A4249_RS15845 0.88 +0.3 3,201,613 - A4249_RS15845 0.88 -0.1 3,201,613 - A4249_RS15845 0.88 -0.1 3,201,613 - A4249_RS15845 0.88 -0.5 3,201,613 - A4249_RS15845 0.88 +0.5 3,201,613 - A4249_RS15845 0.88 +0.0 3,201,613 - A4249_RS15845 0.88 +0.4 3,201,613 - A4249_RS15845 0.88 -0.1 3,201,654 + +0.6 3,201,654 + -0.1 3,201,654 + -1.2 3,201,654 + +0.4 3,201,654 + -0.1 3,201,654 + -0.4 3,201,654 + -0.4 3,201,654 + +0.2 3,201,655 - -1.4 3,201,655 - -1.2 3,201,655 - -0.1 3,201,655 - +0.0 3,201,655 - +0.4 3,201,655 - -2.8 3,201,655 - -1.7 3,201,655 - +0.5 3,201,655 - -0.1 3,201,657 - -0.1 3,201,763 - +1.0 3,202,117 + A4249_RS15850 0.53 -0.1 3,202,117 + A4249_RS15850 0.53 -0.1 3,202,118 - A4249_RS15850 0.53 +0.5 3,202,373 + A4249_RS15850 0.89 +0.0 3,202,374 - A4249_RS15850 0.90 +0.4 3,202,374 - A4249_RS15850 0.90 -1.3 3,202,374 - A4249_RS15850 0.90 -0.1 3,202,420 + +0.2 3,202,420 + -0.3 3,202,420 + -1.1 3,202,420 + -0.8 3,202,421 - +0.4 3,203,084 - A4249_RS15860 0.12 +0.3
Or see this region's nucleotide sequence