Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14875

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14865 and A4249_RS14870 are separated by 51 nucleotidesA4249_RS14870 and A4249_RS14875 are separated by 14 nucleotidesA4249_RS14875 and A4249_RS14880 are separated by 57 nucleotidesA4249_RS14880 and A4249_RS14885 are separated by 101 nucleotides A4249_RS14865: A4249_RS14865 - glutathione S-transferase N-terminal domain-containing protein, at 3,008,933 to 3,009,649 _RS14865 A4249_RS14870: A4249_RS14870 - DUF3597 family protein, at 3,009,701 to 3,010,087 _RS14870 A4249_RS14875: A4249_RS14875 - benzoate/H(+) symporter BenE family transporter, at 3,010,102 to 3,011,286 _RS14875 A4249_RS14880: A4249_RS14880 - enoyl-ACP reductase, at 3,011,344 to 3,012,141 _RS14880 A4249_RS14885: A4249_RS14885 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 3,012,243 to 3,013,121 _RS14885 Position (kb) 3010 3011 3012Strain fitness (log2 ratio) -1 0 1at 3009.218 kb on + strand, within A4249_RS14865at 3009.218 kb on + strand, within A4249_RS14865at 3009.218 kb on + strand, within A4249_RS14865at 3009.218 kb on + strand, within A4249_RS14865at 3009.218 kb on + strand, within A4249_RS14865at 3009.219 kb on - strand, within A4249_RS14865at 3009.219 kb on - strand, within A4249_RS14865at 3009.219 kb on - strand, within A4249_RS14865at 3009.219 kb on - strand, within A4249_RS14865at 3009.219 kb on - strand, within A4249_RS14865at 3009.269 kb on + strand, within A4249_RS14865at 3009.362 kb on + strand, within A4249_RS14865at 3009.362 kb on + strand, within A4249_RS14865at 3009.363 kb on - strand, within A4249_RS14865at 3009.363 kb on - strand, within A4249_RS14865at 3009.363 kb on - strand, within A4249_RS14865at 3009.363 kb on - strand, within A4249_RS14865at 3009.389 kb on + strand, within A4249_RS14865at 3009.389 kb on + strand, within A4249_RS14865at 3009.389 kb on + strand, within A4249_RS14865at 3009.390 kb on - strand, within A4249_RS14865at 3009.479 kb on + strand, within A4249_RS14865at 3009.479 kb on + strand, within A4249_RS14865at 3009.480 kb on - strand, within A4249_RS14865at 3009.480 kb on - strand, within A4249_RS14865at 3009.480 kb on - strand, within A4249_RS14865at 3009.480 kb on - strand, within A4249_RS14865at 3009.480 kb on - strand, within A4249_RS14865at 3009.533 kb on + strand, within A4249_RS14865at 3009.627 kb on + strandat 3009.628 kb on - strandat 3009.628 kb on - strandat 3009.671 kb on + strandat 3009.672 kb on - strandat 3009.700 kb on + strandat 3009.700 kb on + strandat 3009.700 kb on + strandat 3009.701 kb on - strandat 3009.701 kb on - strandat 3009.701 kb on - strandat 3009.701 kb on - strandat 3009.706 kb on + strandat 3009.706 kb on + strandat 3009.707 kb on - strandat 3009.916 kb on + strand, within A4249_RS14870at 3009.916 kb on + strand, within A4249_RS14870at 3009.916 kb on + strand, within A4249_RS14870at 3009.916 kb on + strand, within A4249_RS14870at 3009.916 kb on + strand, within A4249_RS14870at 3009.917 kb on - strand, within A4249_RS14870at 3009.917 kb on - strand, within A4249_RS14870at 3009.917 kb on - strand, within A4249_RS14870at 3009.917 kb on - strand, within A4249_RS14870at 3009.917 kb on - strand, within A4249_RS14870at 3009.917 kb on - strand, within A4249_RS14870at 3009.917 kb on - strand, within A4249_RS14870at 3010.085 kb on + strandat 3010.379 kb on + strand, within A4249_RS14875at 3010.379 kb on + strand, within A4249_RS14875at 3010.380 kb on - strand, within A4249_RS14875at 3010.380 kb on - strand, within A4249_RS14875at 3010.391 kb on + strand, within A4249_RS14875at 3010.391 kb on + strand, within A4249_RS14875at 3010.392 kb on - strand, within A4249_RS14875at 3011.297 kb on + strandat 3011.351 kb on - strandat 3012.244 kb on + strandat 3012.244 kb on + strandat 3012.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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3,009,218 + A4249_RS14865 0.40 +0.0
3,009,218 + A4249_RS14865 0.40 -0.2
3,009,218 + A4249_RS14865 0.40 -0.0
3,009,218 + A4249_RS14865 0.40 -0.1
3,009,218 + A4249_RS14865 0.40 -0.7
3,009,219 - A4249_RS14865 0.40 -0.8
3,009,219 - A4249_RS14865 0.40 -0.2
3,009,219 - A4249_RS14865 0.40 +0.5
3,009,219 - A4249_RS14865 0.40 +0.0
3,009,219 - A4249_RS14865 0.40 -1.3
3,009,269 + A4249_RS14865 0.47 -0.6
3,009,362 + A4249_RS14865 0.60 -0.9
3,009,362 + A4249_RS14865 0.60 +0.6
3,009,363 - A4249_RS14865 0.60 +0.3
3,009,363 - A4249_RS14865 0.60 -0.8
3,009,363 - A4249_RS14865 0.60 -0.9
3,009,363 - A4249_RS14865 0.60 -0.3
3,009,389 + A4249_RS14865 0.64 -0.7
3,009,389 + A4249_RS14865 0.64 +0.1
3,009,389 + A4249_RS14865 0.64 -0.6
3,009,390 - A4249_RS14865 0.64 +0.3
3,009,479 + A4249_RS14865 0.76 +0.3
3,009,479 + A4249_RS14865 0.76 -0.2
3,009,480 - A4249_RS14865 0.76 -0.2
3,009,480 - A4249_RS14865 0.76 -1.7
3,009,480 - A4249_RS14865 0.76 -0.6
3,009,480 - A4249_RS14865 0.76 -0.7
3,009,480 - A4249_RS14865 0.76 +0.1
3,009,533 + A4249_RS14865 0.84 -0.7
3,009,627 + -0.8
3,009,628 - +0.2
3,009,628 - -0.1
3,009,671 + -1.0
3,009,672 - +0.8
3,009,700 + +1.0
3,009,700 + -0.5
3,009,700 + +1.0
3,009,701 - +0.1
3,009,701 - -0.0
3,009,701 - +0.3
3,009,701 - +0.6
3,009,706 + -0.1
3,009,706 + +0.7
3,009,707 - -0.2
3,009,916 + A4249_RS14870 0.56 -0.5
3,009,916 + A4249_RS14870 0.56 -0.6
3,009,916 + A4249_RS14870 0.56 -0.1
3,009,916 + A4249_RS14870 0.56 +0.9
3,009,916 + A4249_RS14870 0.56 +1.1
3,009,917 - A4249_RS14870 0.56 +0.5
3,009,917 - A4249_RS14870 0.56 +0.1
3,009,917 - A4249_RS14870 0.56 -1.0
3,009,917 - A4249_RS14870 0.56 -0.5
3,009,917 - A4249_RS14870 0.56 +0.6
3,009,917 - A4249_RS14870 0.56 +0.7
3,009,917 - A4249_RS14870 0.56 -0.3
3,010,085 + +0.3
3,010,379 + A4249_RS14875 0.23 +0.4
3,010,379 + A4249_RS14875 0.23 -0.8
3,010,380 - A4249_RS14875 0.23 -0.2
3,010,380 - A4249_RS14875 0.23 -0.4
3,010,391 + A4249_RS14875 0.24 -1.0
3,010,391 + A4249_RS14875 0.24 +0.1
3,010,392 - A4249_RS14875 0.24 -1.1
3,011,297 + -1.0
3,011,351 - -0.6
3,012,244 + +0.0
3,012,244 + -0.2
3,012,245 - +0.1

Or see this region's nucleotide sequence