Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14770

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14760 and A4249_RS14765 are separated by 93 nucleotidesA4249_RS14765 and A4249_RS14770 are separated by 50 nucleotidesA4249_RS14770 and A4249_RS14775 are separated by 102 nucleotidesA4249_RS14775 and A4249_RS14780 overlap by 4 nucleotides A4249_RS14760: A4249_RS14760 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,989,424 to 2,990,878 _RS14760 A4249_RS14765: A4249_RS14765 - entericidin A/B family lipoprotein, at 2,990,972 to 2,991,109 _RS14765 A4249_RS14770: A4249_RS14770 - sensor histidine kinase, at 2,991,160 to 2,992,854 _RS14770 A4249_RS14775: A4249_RS14775 - sigma-70 family RNA polymerase sigma factor, at 2,992,957 to 2,993,568 _RS14775 A4249_RS14780: A4249_RS14780 - NepR family anti-sigma factor, at 2,993,565 to 2,993,765 _RS14780 Position (kb) 2991 2992 2993Strain fitness (log2 ratio) -2 -1 0 1at 2990.283 kb on + strand, within A4249_RS14760at 2990.283 kb on + strand, within A4249_RS14760at 2990.284 kb on - strand, within A4249_RS14760at 2990.284 kb on - strand, within A4249_RS14760at 2990.445 kb on + strand, within A4249_RS14760at 2990.445 kb on + strand, within A4249_RS14760at 2990.445 kb on + strand, within A4249_RS14760at 2990.538 kb on + strand, within A4249_RS14760at 2990.538 kb on + strand, within A4249_RS14760at 2990.539 kb on - strand, within A4249_RS14760at 2990.890 kb on + strandat 2990.891 kb on - strandat 2990.891 kb on - strandat 2990.973 kb on + strandat 2990.974 kb on - strandat 2990.974 kb on - strandat 2990.974 kb on - strandat 2990.974 kb on - strandat 2991.109 kb on + strandat 2993.142 kb on - strand, within A4249_RS14775at 2993.324 kb on + strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.325 kb on - strand, within A4249_RS14775at 2993.381 kb on + strand, within A4249_RS14775at 2993.382 kb on - strand, within A4249_RS14775at 2993.382 kb on - strand, within A4249_RS14775at 2993.382 kb on - strand, within A4249_RS14775at 2993.604 kb on + strand, within A4249_RS14780at 2993.605 kb on - strand, within A4249_RS14780at 2993.605 kb on - strand, within A4249_RS14780at 2993.658 kb on - strand, within A4249_RS14780at 2993.658 kb on - strand, within A4249_RS14780at 2993.766 kb on - strandat 2993.766 kb on - strandat 2993.766 kb on - strandat 2993.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,990,283 + A4249_RS14760 0.59 -0.6
2,990,283 + A4249_RS14760 0.59 -0.3
2,990,284 - A4249_RS14760 0.59 -0.3
2,990,284 - A4249_RS14760 0.59 -0.0
2,990,445 + A4249_RS14760 0.70 -0.4
2,990,445 + A4249_RS14760 0.70 -0.3
2,990,445 + A4249_RS14760 0.70 +0.1
2,990,538 + A4249_RS14760 0.77 +0.5
2,990,538 + A4249_RS14760 0.77 +0.1
2,990,539 - A4249_RS14760 0.77 -2.1
2,990,890 + +0.5
2,990,891 - -0.2
2,990,891 - -1.5
2,990,973 + -0.6
2,990,974 - +0.1
2,990,974 - -0.1
2,990,974 - -0.1
2,990,974 - -0.5
2,991,109 + -0.1
2,993,142 - A4249_RS14775 0.30 +0.1
2,993,324 + A4249_RS14775 0.60 -0.1
2,993,325 - A4249_RS14775 0.60 -0.2
2,993,325 - A4249_RS14775 0.60 -0.2
2,993,325 - A4249_RS14775 0.60 -0.1
2,993,325 - A4249_RS14775 0.60 -0.1
2,993,325 - A4249_RS14775 0.60 -0.2
2,993,325 - A4249_RS14775 0.60 -0.1
2,993,381 + A4249_RS14775 0.69 -0.2
2,993,382 - A4249_RS14775 0.69 -0.0
2,993,382 - A4249_RS14775 0.69 -0.1
2,993,382 - A4249_RS14775 0.69 +0.0
2,993,604 + A4249_RS14780 0.19 +0.5
2,993,605 - A4249_RS14780 0.20 -0.3
2,993,605 - A4249_RS14780 0.20 -0.1
2,993,658 - A4249_RS14780 0.46 -0.6
2,993,658 - A4249_RS14780 0.46 -0.5
2,993,766 - +0.4
2,993,766 - +0.9
2,993,766 - -0.3
2,993,766 - -0.2

Or see this region's nucleotide sequence