Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14565

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14560 and A4249_RS14565 are separated by 2 nucleotidesA4249_RS14565 and A4249_RS14570 are separated by 115 nucleotides A4249_RS14560: A4249_RS14560 - M1 family metallopeptidase, at 2,948,211 to 2,950,163 _RS14560 A4249_RS14565: A4249_RS14565 - DUF488 domain-containing protein, at 2,950,166 to 2,950,597 _RS14565 A4249_RS14570: A4249_RS14570 - complex I NDUFA9 subunit family protein, at 2,950,713 to 2,951,690 _RS14570 Position (kb) 2950 2951Strain fitness (log2 ratio) -1 0 1at 2949.298 kb on - strand, within A4249_RS14560at 2949.327 kb on + strand, within A4249_RS14560at 2949.327 kb on + strand, within A4249_RS14560at 2949.328 kb on - strand, within A4249_RS14560at 2949.550 kb on - strand, within A4249_RS14560at 2949.550 kb on - strand, within A4249_RS14560at 2949.669 kb on + strand, within A4249_RS14560at 2949.670 kb on - strand, within A4249_RS14560at 2949.966 kb on + strand, within A4249_RS14560at 2950.092 kb on + strandat 2950.092 kb on + strandat 2950.093 kb on - strandat 2950.093 kb on - strandat 2950.093 kb on - strandat 2950.093 kb on - strandat 2950.113 kb on + strandat 2950.113 kb on + strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.425 kb on + strand, within A4249_RS14565at 2950.425 kb on + strand, within A4249_RS14565at 2950.425 kb on + strand, within A4249_RS14565at 2950.425 kb on + strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.575 kb on + strandat 2950.676 kb on + strandat 2951.109 kb on + strand, within A4249_RS14570at 2951.109 kb on + strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.383 kb on - strand, within A4249_RS14570

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,949,298 - A4249_RS14560 0.56 -0.2
2,949,327 + A4249_RS14560 0.57 -1.0
2,949,327 + A4249_RS14560 0.57 +0.1
2,949,328 - A4249_RS14560 0.57 +0.2
2,949,550 - A4249_RS14560 0.69 +0.5
2,949,550 - A4249_RS14560 0.69 +0.3
2,949,669 + A4249_RS14560 0.75 -0.1
2,949,670 - A4249_RS14560 0.75 +0.1
2,949,966 + A4249_RS14560 0.90 -0.1
2,950,092 + +0.3
2,950,092 + +0.0
2,950,093 - +0.3
2,950,093 - -1.1
2,950,093 - +0.6
2,950,093 - -0.3
2,950,113 + +0.8
2,950,113 + -0.1
2,950,114 - -0.5
2,950,114 - +0.4
2,950,114 - -1.4
2,950,114 - -1.7
2,950,114 - -0.4
2,950,114 - -1.0
2,950,425 + A4249_RS14565 0.60 -0.3
2,950,425 + A4249_RS14565 0.60 -1.1
2,950,425 + A4249_RS14565 0.60 -0.1
2,950,425 + A4249_RS14565 0.60 +0.5
2,950,426 - A4249_RS14565 0.60 +0.5
2,950,426 - A4249_RS14565 0.60 -0.5
2,950,426 - A4249_RS14565 0.60 -1.0
2,950,426 - A4249_RS14565 0.60 -0.0
2,950,426 - A4249_RS14565 0.60 -1.4
2,950,426 - A4249_RS14565 0.60 -0.2
2,950,426 - A4249_RS14565 0.60 -1.4
2,950,575 + +0.1
2,950,676 + -0.0
2,951,109 + A4249_RS14570 0.40 +0.0
2,951,109 + A4249_RS14570 0.40 -0.1
2,951,110 - A4249_RS14570 0.41 +0.1
2,951,110 - A4249_RS14570 0.41 -0.3
2,951,110 - A4249_RS14570 0.41 +0.1
2,951,292 + A4249_RS14570 0.59 -0.8
2,951,292 + A4249_RS14570 0.59 +0.3
2,951,292 + A4249_RS14570 0.59 -0.0
2,951,292 + A4249_RS14570 0.59 -1.4
2,951,292 + A4249_RS14570 0.59 -0.6
2,951,292 + A4249_RS14570 0.59 -0.5
2,951,292 + A4249_RS14570 0.59 +0.2
2,951,292 + A4249_RS14570 0.59 -0.2
2,951,292 + A4249_RS14570 0.59 -1.0
2,951,293 - A4249_RS14570 0.59 -0.1
2,951,293 - A4249_RS14570 0.59 +0.1
2,951,293 - A4249_RS14570 0.59 -0.5
2,951,293 - A4249_RS14570 0.59 +0.0
2,951,293 - A4249_RS14570 0.59 +0.2
2,951,293 - A4249_RS14570 0.59 +0.2
2,951,358 + A4249_RS14570 0.66 -0.2
2,951,358 + A4249_RS14570 0.66 +0.3
2,951,358 + A4249_RS14570 0.66 -0.2
2,951,358 + A4249_RS14570 0.66 +0.4
2,951,358 + A4249_RS14570 0.66 +0.9
2,951,358 + A4249_RS14570 0.66 +0.8
2,951,359 - A4249_RS14570 0.66 +0.4
2,951,359 - A4249_RS14570 0.66 +0.2
2,951,359 - A4249_RS14570 0.66 -0.3
2,951,359 - A4249_RS14570 0.66 -0.0
2,951,359 - A4249_RS14570 0.66 +0.6
2,951,359 - A4249_RS14570 0.66 -0.9
2,951,359 - A4249_RS14570 0.66 +0.5
2,951,382 + A4249_RS14570 0.68 -0.2
2,951,382 + A4249_RS14570 0.68 -0.5
2,951,382 + A4249_RS14570 0.68 +0.1
2,951,382 + A4249_RS14570 0.68 -0.0
2,951,382 + A4249_RS14570 0.68 -0.4
2,951,382 + A4249_RS14570 0.68 -0.9
2,951,382 + A4249_RS14570 0.68 -0.5
2,951,382 + A4249_RS14570 0.68 +0.6
2,951,382 + A4249_RS14570 0.68 +0.1
2,951,382 + A4249_RS14570 0.68 +0.5
2,951,383 - A4249_RS14570 0.69 +0.4

Or see this region's nucleotide sequence