Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13910

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13900 and A4249_RS13905 are separated by 87 nucleotidesA4249_RS13905 and A4249_RS13910 are separated by 87 nucleotidesA4249_RS13910 and A4249_RS16680 are separated by 581 nucleotidesA4249_RS16680 and A4249_RS13920 are separated by 88 nucleotides A4249_RS13900: A4249_RS13900 - 23S ribosomal RNA, at 2,804,168 to 2,806,941 _RS13900 A4249_RS13905: A4249_RS13905 - 5S ribosomal RNA, at 2,807,029 to 2,807,143 _RS13905 A4249_RS13910: A4249_RS13910 - tRNA-Met, at 2,807,231 to 2,807,307 _RS13910 A4249_RS16680: A4249_RS16680 - hypothetical protein, at 2,807,889 to 2,808,050 _RS16680 A4249_RS13920: A4249_RS13920 - TonB-dependent receptor, at 2,808,139 to 2,810,172 _RS13920 Position (kb) 2807 2808Strain fitness (log2 ratio) -1 0 1at 2807.403 kb on + strandat 2807.403 kb on + strandat 2807.417 kb on + strandat 2807.417 kb on + strandat 2807.418 kb on - strandat 2807.418 kb on - strandat 2807.445 kb on - strandat 2807.490 kb on + strandat 2807.490 kb on + strandat 2807.491 kb on - strandat 2807.491 kb on - strandat 2807.589 kb on + strandat 2807.589 kb on + strandat 2807.644 kb on + strandat 2807.645 kb on - strandat 2807.645 kb on - strandat 2807.645 kb on - strandat 2807.664 kb on + strandat 2807.664 kb on + strandat 2807.664 kb on + strandat 2807.665 kb on - strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.786 kb on + strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.787 kb on - strandat 2807.817 kb on + strandat 2807.817 kb on + strandat 2807.817 kb on + strandat 2807.818 kb on - strandat 2807.818 kb on - strandat 2807.818 kb on - strandat 2807.818 kb on - strandat 2807.858 kb on - strandat 2807.858 kb on - strandat 2807.891 kb on - strandat 2807.956 kb on - strand, within A4249_RS16680at 2808.050 kb on + strandat 2808.050 kb on + strandat 2808.051 kb on - strandat 2808.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,807,403 + -0.3
2,807,403 + +0.3
2,807,417 + +0.1
2,807,417 + -0.4
2,807,418 - -0.8
2,807,418 - -1.2
2,807,445 - -0.2
2,807,490 + +0.4
2,807,490 + +0.5
2,807,491 - -0.1
2,807,491 - +0.4
2,807,589 + +0.1
2,807,589 + +0.3
2,807,644 + +0.2
2,807,645 - +0.3
2,807,645 - +1.6
2,807,645 - +0.0
2,807,664 + -0.3
2,807,664 + +0.7
2,807,664 + +0.1
2,807,665 - +0.2
2,807,786 + +0.0
2,807,786 + +0.9
2,807,786 + -0.2
2,807,786 + +0.1
2,807,786 + -0.9
2,807,787 - +0.2
2,807,787 - +0.2
2,807,787 - +0.7
2,807,787 - -0.1
2,807,787 - -0.3
2,807,787 - -0.7
2,807,787 - +0.2
2,807,787 - -1.0
2,807,787 - +0.0
2,807,787 - +0.8
2,807,787 - +0.2
2,807,787 - +0.5
2,807,787 - +0.2
2,807,787 - -1.3
2,807,817 + -0.7
2,807,817 + -0.0
2,807,817 + -0.1
2,807,818 - +0.9
2,807,818 - -0.1
2,807,818 - -0.0
2,807,818 - +0.2
2,807,858 - +0.0
2,807,858 - +0.4
2,807,891 - -0.2
2,807,956 - A4249_RS16680 0.41 -0.4
2,808,050 + -0.1
2,808,050 + +0.3
2,808,051 - +0.0
2,808,150 - -0.8

Or see this region's nucleotide sequence