Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13410

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13405 and A4249_RS13410 are separated by 266 nucleotidesA4249_RS13410 and A4249_RS13415 are separated by 37 nucleotidesA4249_RS13415 and A4249_RS13420 are separated by 206 nucleotides A4249_RS13405: A4249_RS13405 - alanine--tRNA ligase, at 2,707,903 to 2,710,560 _RS13405 A4249_RS13410: A4249_RS13410 - pirin family protein, at 2,710,827 to 2,711,687 _RS13410 A4249_RS13415: A4249_RS13415 - hypothetical protein, at 2,711,725 to 2,712,318 _RS13415 A4249_RS13420: A4249_RS13420 - succinate dehydrogenase, cytochrome b556 subunit, at 2,712,525 to 2,712,989 _RS13420 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -3 -2 -1 0 1at 2710.604 kb on + strandat 2710.604 kb on + strandat 2710.604 kb on + strandat 2710.604 kb on + strandat 2710.604 kb on + strandat 2710.604 kb on + strandat 2710.605 kb on - strandat 2710.605 kb on - strandat 2710.605 kb on - strandat 2710.605 kb on - strandat 2710.605 kb on - strandat 2710.605 kb on - strandat 2710.605 kb on - strandat 2710.605 kb on - strandat 2710.606 kb on + strandat 2710.606 kb on + strandat 2710.606 kb on + strandat 2710.606 kb on + strandat 2710.606 kb on + strandat 2710.607 kb on - strandat 2710.607 kb on - strandat 2710.607 kb on - strandat 2710.607 kb on - strandat 2710.607 kb on - strandat 2710.733 kb on + strandat 2710.733 kb on + strandat 2710.733 kb on + strandat 2710.734 kb on - strandat 2710.734 kb on - strandat 2710.734 kb on - strandat 2710.823 kb on + strandat 2710.823 kb on + strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.824 kb on - strandat 2710.864 kb on + strandat 2710.864 kb on + strandat 2710.864 kb on + strandat 2710.864 kb on + strandat 2710.865 kb on - strandat 2710.865 kb on - strandat 2710.865 kb on - strandat 2711.074 kb on + strand, within A4249_RS13410at 2711.074 kb on + strand, within A4249_RS13410at 2711.074 kb on + strand, within A4249_RS13410at 2711.075 kb on - strand, within A4249_RS13410at 2711.269 kb on + strand, within A4249_RS13410at 2711.269 kb on + strand, within A4249_RS13410at 2711.269 kb on + strand, within A4249_RS13410at 2711.269 kb on + strand, within A4249_RS13410at 2711.269 kb on + strand, within A4249_RS13410at 2711.270 kb on - strand, within A4249_RS13410at 2711.270 kb on - strand, within A4249_RS13410at 2711.270 kb on - strand, within A4249_RS13410at 2711.270 kb on - strand, within A4249_RS13410at 2711.270 kb on - strand, within A4249_RS13410at 2711.270 kb on - strand, within A4249_RS13410at 2711.542 kb on + strand, within A4249_RS13410at 2711.542 kb on + strand, within A4249_RS13410at 2711.542 kb on + strand, within A4249_RS13410at 2711.542 kb on + strand, within A4249_RS13410at 2711.542 kb on + strand, within A4249_RS13410at 2711.543 kb on - strand, within A4249_RS13410at 2711.543 kb on - strand, within A4249_RS13410at 2711.543 kb on - strand, within A4249_RS13410at 2711.543 kb on - strand, within A4249_RS13410at 2711.543 kb on - strand, within A4249_RS13410at 2711.543 kb on - strand, within A4249_RS13410at 2711.543 kb on - strand, within A4249_RS13410at 2711.692 kb on + strandat 2711.693 kb on - strandat 2711.696 kb on + strandat 2711.697 kb on - strandat 2711.698 kb on + strandat 2711.698 kb on + strandat 2711.698 kb on + strandat 2711.699 kb on - strandat 2711.746 kb on - strandat 2712.065 kb on + strand, within A4249_RS13415at 2712.065 kb on + strand, within A4249_RS13415at 2712.065 kb on + strand, within A4249_RS13415at 2712.065 kb on + strand, within A4249_RS13415at 2712.065 kb on + strand, within A4249_RS13415at 2712.065 kb on + strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.066 kb on - strand, within A4249_RS13415at 2712.098 kb on + strand, within A4249_RS13415at 2712.099 kb on - strand, within A4249_RS13415at 2712.099 kb on - strand, within A4249_RS13415at 2712.110 kb on + strand, within A4249_RS13415at 2712.209 kb on + strand, within A4249_RS13415at 2712.234 kb on - strand, within A4249_RS13415at 2712.407 kb on + strandat 2712.407 kb on + strandat 2712.407 kb on + strandat 2712.408 kb on - strandat 2712.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,710,604 + -0.2
2,710,604 + -0.4
2,710,604 + +0.3
2,710,604 + -0.3
2,710,604 + -0.2
2,710,604 + +0.3
2,710,605 - +0.2
2,710,605 - -0.2
2,710,605 - -0.4
2,710,605 - +0.5
2,710,605 - -0.8
2,710,605 - +0.6
2,710,605 - -0.6
2,710,605 - +0.1
2,710,606 + +0.8
2,710,606 + -0.8
2,710,606 + -0.1
2,710,606 + +0.4
2,710,606 + -0.9
2,710,607 - +1.1
2,710,607 - -0.7
2,710,607 - -0.5
2,710,607 - +0.5
2,710,607 - +0.1
2,710,733 + +0.7
2,710,733 + -0.6
2,710,733 + -0.3
2,710,734 - +0.2
2,710,734 - -0.4
2,710,734 - +0.0
2,710,823 + +0.6
2,710,823 + -1.2
2,710,824 - -0.4
2,710,824 - -0.4
2,710,824 - +0.0
2,710,824 - +0.0
2,710,824 - +0.2
2,710,824 - +0.1
2,710,824 - -0.8
2,710,824 - -0.2
2,710,824 - -1.0
2,710,824 - -0.9
2,710,864 + +0.9
2,710,864 + -0.3
2,710,864 + -0.0
2,710,864 + +0.6
2,710,865 - -0.4
2,710,865 - -1.2
2,710,865 - +0.3
2,711,074 + A4249_RS13410 0.29 -0.1
2,711,074 + A4249_RS13410 0.29 +0.2
2,711,074 + A4249_RS13410 0.29 +0.1
2,711,075 - A4249_RS13410 0.29 -0.2
2,711,269 + A4249_RS13410 0.51 +0.1
2,711,269 + A4249_RS13410 0.51 +0.3
2,711,269 + A4249_RS13410 0.51 -1.1
2,711,269 + A4249_RS13410 0.51 -0.5
2,711,269 + A4249_RS13410 0.51 +0.5
2,711,270 - A4249_RS13410 0.51 -0.2
2,711,270 - A4249_RS13410 0.51 +0.0
2,711,270 - A4249_RS13410 0.51 -0.0
2,711,270 - A4249_RS13410 0.51 -0.4
2,711,270 - A4249_RS13410 0.51 +0.0
2,711,270 - A4249_RS13410 0.51 +0.1
2,711,542 + A4249_RS13410 0.83 -0.1
2,711,542 + A4249_RS13410 0.83 +0.2
2,711,542 + A4249_RS13410 0.83 -0.3
2,711,542 + A4249_RS13410 0.83 -0.7
2,711,542 + A4249_RS13410 0.83 +0.2
2,711,543 - A4249_RS13410 0.83 -0.1
2,711,543 - A4249_RS13410 0.83 +0.5
2,711,543 - A4249_RS13410 0.83 -0.0
2,711,543 - A4249_RS13410 0.83 -2.8
2,711,543 - A4249_RS13410 0.83 -0.7
2,711,543 - A4249_RS13410 0.83 +0.2
2,711,543 - A4249_RS13410 0.83 +0.0
2,711,692 + +0.3
2,711,693 - -0.4
2,711,696 + +0.6
2,711,697 - +0.2
2,711,698 + -0.5
2,711,698 + -0.3
2,711,698 + -1.3
2,711,699 - +0.4
2,711,746 - -0.6
2,712,065 + A4249_RS13415 0.57 +0.6
2,712,065 + A4249_RS13415 0.57 +0.2
2,712,065 + A4249_RS13415 0.57 +0.3
2,712,065 + A4249_RS13415 0.57 +0.1
2,712,065 + A4249_RS13415 0.57 -0.2
2,712,065 + A4249_RS13415 0.57 -0.6
2,712,066 - A4249_RS13415 0.57 +0.6
2,712,066 - A4249_RS13415 0.57 -0.1
2,712,066 - A4249_RS13415 0.57 -0.5
2,712,066 - A4249_RS13415 0.57 -0.0
2,712,066 - A4249_RS13415 0.57 -0.9
2,712,066 - A4249_RS13415 0.57 +1.7
2,712,066 - A4249_RS13415 0.57 -0.3
2,712,066 - A4249_RS13415 0.57 -0.2
2,712,098 + A4249_RS13415 0.63 -0.5
2,712,099 - A4249_RS13415 0.63 -0.8
2,712,099 - A4249_RS13415 0.63 -0.1
2,712,110 + A4249_RS13415 0.65 +1.0
2,712,209 + A4249_RS13415 0.81 -0.1
2,712,234 - A4249_RS13415 0.86 +0.5
2,712,407 + +0.1
2,712,407 + -0.1
2,712,407 + -0.1
2,712,408 - -0.2
2,712,408 - +0.0

Or see this region's nucleotide sequence