Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS10580 and A4249_RS10585 are separated by 34 nucleotides A4249_RS10585 and A4249_RS10590 are separated by 56 nucleotides A4249_RS10590 and A4249_RS10595 are separated by 49 nucleotides
A4249_RS10580: A4249_RS10580 - DNA ligase D, at 2,124,273 to 2,126,834
_RS10580
A4249_RS10585: A4249_RS10585 - extensin family protein, at 2,126,869 to 2,127,612
_RS10585
A4249_RS10590: A4249_RS10590 - DUF2256 domain-containing protein, at 2,127,669 to 2,127,848
_RS10590
A4249_RS10595: A4249_RS10595 - RNA polymerase sigma factor RpoD, at 2,127,898 to 2,129,844
_RS10595
Position (kb)
2127
2128 Strain fitness (log2 ratio)
-2
-1
0
1 at 2126.698 kb on + strand at 2126.698 kb on + strand at 2126.698 kb on + strand at 2126.699 kb on - strand at 2126.699 kb on - strand at 2126.699 kb on - strand at 2126.699 kb on - strand at 2126.699 kb on - strand at 2126.699 kb on - strand at 2126.735 kb on - strand at 2126.735 kb on - strand at 2126.812 kb on + strand at 2126.812 kb on + strand at 2126.812 kb on + strand at 2126.812 kb on + strand at 2126.812 kb on + strand at 2126.812 kb on + strand at 2126.812 kb on + strand at 2126.812 kb on + strand at 2126.813 kb on - strand at 2126.813 kb on - strand at 2126.813 kb on - strand at 2126.813 kb on - strand at 2126.813 kb on - strand at 2126.813 kb on - strand at 2126.813 kb on - strand at 2126.834 kb on + strand at 2126.834 kb on + strand at 2126.835 kb on - strand at 2126.842 kb on + strand at 2126.842 kb on + strand at 2126.842 kb on + strand at 2126.843 kb on - strand at 2126.843 kb on - strand at 2126.930 kb on + strand at 2126.931 kb on - strand at 2126.931 kb on - strand at 2126.931 kb on - strand at 2126.979 kb on + strand, within A4249_RS10585 at 2126.980 kb on - strand, within A4249_RS10585 at 2127.144 kb on - strand, within A4249_RS10585 at 2127.414 kb on + strand, within A4249_RS10585 at 2127.625 kb on + strand at 2127.625 kb on + strand at 2127.625 kb on + strand at 2127.625 kb on + strand at 2127.625 kb on + strand at 2127.625 kb on + strand at 2127.625 kb on + strand at 2127.626 kb on - strand at 2127.626 kb on - strand at 2127.626 kb on - strand at 2127.671 kb on - strand at 2127.896 kb on + strand at 2127.896 kb on + strand at 2127.896 kb on + strand at 2127.896 kb on + strand at 2127.896 kb on + strand at 2127.896 kb on + strand at 2127.896 kb on + strand at 2127.897 kb on - strand at 2127.897 kb on - strand at 2127.897 kb on - strand at 2127.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 2,126,698 + -1.8 2,126,698 + -1.1 2,126,698 + +0.4 2,126,699 - +0.6 2,126,699 - -0.8 2,126,699 - +0.4 2,126,699 - -0.1 2,126,699 - +0.2 2,126,699 - +0.3 2,126,735 - -0.6 2,126,735 - +0.4 2,126,812 + -0.1 2,126,812 + +0.3 2,126,812 + -0.0 2,126,812 + -0.3 2,126,812 + -0.6 2,126,812 + +0.0 2,126,812 + +0.7 2,126,812 + +0.1 2,126,813 - -0.1 2,126,813 - +0.1 2,126,813 - +1.2 2,126,813 - +0.2 2,126,813 - +0.0 2,126,813 - -0.2 2,126,813 - -0.5 2,126,834 + -0.6 2,126,834 + -0.4 2,126,835 - -0.0 2,126,842 + -0.1 2,126,842 + +0.2 2,126,842 + -0.1 2,126,843 - +0.5 2,126,843 - +0.5 2,126,930 + +0.1 2,126,931 - +0.1 2,126,931 - +0.2 2,126,931 - -0.4 2,126,979 + A4249_RS10585 0.15 -0.1 2,126,980 - A4249_RS10585 0.15 +0.1 2,127,144 - A4249_RS10585 0.37 -0.1 2,127,414 + A4249_RS10585 0.73 -0.1 2,127,625 + +0.0 2,127,625 + +0.1 2,127,625 + -0.2 2,127,625 + +0.2 2,127,625 + -0.7 2,127,625 + -0.8 2,127,625 + -0.3 2,127,626 - -0.2 2,127,626 - -1.2 2,127,626 - +0.5 2,127,671 - -0.3 2,127,896 + -0.6 2,127,896 + -0.4 2,127,896 + +1.5 2,127,896 + -0.3 2,127,896 + +0.9 2,127,896 + -0.5 2,127,896 + -0.8 2,127,897 - +0.1 2,127,897 - +0.3 2,127,897 - +0.3 2,127,897 - -0.2
Or see this region's nucleotide sequence