Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09520

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09505 and A4249_RS09510 are separated by 52 nucleotidesA4249_RS09510 and A4249_RS09515 are separated by 7 nucleotidesA4249_RS09515 and A4249_RS09520 are separated by 62 nucleotidesA4249_RS09520 and A4249_RS09525 are separated by 141 nucleotidesA4249_RS09525 and A4249_RS09530 are separated by 0 nucleotides A4249_RS09505: A4249_RS09505 - DNA-3-methyladenine glycosylase I, at 1,898,825 to 1,899,433 _RS09505 A4249_RS09510: A4249_RS09510 - ribonuclease HII, at 1,899,486 to 1,900,067 _RS09510 A4249_RS09515: A4249_RS09515 - hypothetical protein, at 1,900,075 to 1,900,353 _RS09515 A4249_RS09520: A4249_RS09520 - DNA adenine methylase, at 1,900,416 to 1,901,453 _RS09520 A4249_RS09525: A4249_RS09525 - VIT family protein, at 1,901,595 to 1,902,284 _RS09525 A4249_RS09530: A4249_RS09530 - TonB-dependent receptor, at 1,902,285 to 1,904,660 _RS09530 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -2 -1 0 1at 1899.432 kb on - strandat 1899.571 kb on + strand, within A4249_RS09510at 1899.571 kb on + strand, within A4249_RS09510at 1899.572 kb on - strand, within A4249_RS09510at 1899.572 kb on - strand, within A4249_RS09510at 1899.582 kb on + strand, within A4249_RS09510at 1899.804 kb on + strand, within A4249_RS09510at 1899.804 kb on + strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.862 kb on + strand, within A4249_RS09510at 1899.942 kb on + strand, within A4249_RS09510at 1899.960 kb on - strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.967 kb on - strand, within A4249_RS09510at 1899.967 kb on - strand, within A4249_RS09510at 1899.967 kb on - strand, within A4249_RS09510at 1900.224 kb on - strand, within A4249_RS09515at 1900.305 kb on - strand, within A4249_RS09515at 1900.305 kb on - strand, within A4249_RS09515at 1900.305 kb on - strand, within A4249_RS09515at 1900.337 kb on + strandat 1900.337 kb on + strandat 1900.337 kb on + strandat 1900.337 kb on + strandat 1900.338 kb on - strandat 1900.338 kb on - strandat 1900.353 kb on + strandat 1900.354 kb on - strandat 1900.391 kb on + strandat 1900.417 kb on + strandat 1900.417 kb on + strandat 1900.417 kb on + strandat 1900.417 kb on + strandat 1900.418 kb on - strandat 1900.418 kb on - strandat 1900.514 kb on + strandat 1900.517 kb on + strandat 1900.518 kb on - strandat 1900.518 kb on - strandat 1900.543 kb on + strand, within A4249_RS09520at 1900.544 kb on - strand, within A4249_RS09520at 1900.544 kb on - strand, within A4249_RS09520at 1900.544 kb on - strand, within A4249_RS09520at 1900.544 kb on - strand, within A4249_RS09520at 1900.544 kb on - strand, within A4249_RS09520at 1900.621 kb on + strand, within A4249_RS09520at 1900.621 kb on + strand, within A4249_RS09520at 1900.762 kb on + strand, within A4249_RS09520at 1900.762 kb on + strand, within A4249_RS09520at 1900.762 kb on + strand, within A4249_RS09520at 1900.762 kb on + strand, within A4249_RS09520at 1900.763 kb on - strand, within A4249_RS09520at 1900.807 kb on + strand, within A4249_RS09520at 1900.807 kb on + strand, within A4249_RS09520at 1900.807 kb on + strand, within A4249_RS09520at 1900.807 kb on + strand, within A4249_RS09520at 1900.808 kb on - strand, within A4249_RS09520at 1900.808 kb on - strand, within A4249_RS09520at 1900.808 kb on - strand, within A4249_RS09520at 1900.808 kb on - strand, within A4249_RS09520at 1900.820 kb on - strand, within A4249_RS09520at 1900.820 kb on - strand, within A4249_RS09520at 1900.834 kb on + strand, within A4249_RS09520at 1900.834 kb on + strand, within A4249_RS09520at 1900.834 kb on + strand, within A4249_RS09520at 1900.835 kb on - strand, within A4249_RS09520at 1900.835 kb on - strand, within A4249_RS09520at 1900.850 kb on - strand, within A4249_RS09520at 1900.988 kb on + strand, within A4249_RS09520at 1900.988 kb on + strand, within A4249_RS09520at 1900.989 kb on - strand, within A4249_RS09520at 1900.989 kb on - strand, within A4249_RS09520at 1900.989 kb on - strand, within A4249_RS09520at 1900.989 kb on - strand, within A4249_RS09520at 1900.990 kb on + strand, within A4249_RS09520at 1900.990 kb on + strand, within A4249_RS09520at 1900.991 kb on - strand, within A4249_RS09520at 1900.991 kb on - strand, within A4249_RS09520at 1900.991 kb on - strand, within A4249_RS09520at 1900.991 kb on - strand, within A4249_RS09520at 1900.991 kb on - strand, within A4249_RS09520at 1900.991 kb on - strand, within A4249_RS09520at 1900.991 kb on - strand, within A4249_RS09520at 1901.257 kb on + strand, within A4249_RS09520at 1901.257 kb on + strand, within A4249_RS09520at 1901.257 kb on + strand, within A4249_RS09520at 1901.257 kb on + strand, within A4249_RS09520at 1901.257 kb on + strand, within A4249_RS09520at 1901.257 kb on + strand, within A4249_RS09520at 1901.257 kb on + strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.258 kb on - strand, within A4249_RS09520at 1901.442 kb on - strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.443 kb on + strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.444 kb on - strandat 1901.482 kb on - strandat 1901.482 kb on - strandat 1901.540 kb on + strandat 1901.540 kb on + strandat 1901.581 kb on + strandat 1901.581 kb on + strandat 1901.581 kb on + strandat 1901.582 kb on - strandat 1901.606 kb on + strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.607 kb on - strandat 1901.734 kb on + strand, within A4249_RS09525at 1901.735 kb on - strand, within A4249_RS09525at 1901.735 kb on - strand, within A4249_RS09525at 1901.735 kb on - strand, within A4249_RS09525at 1901.755 kb on + strand, within A4249_RS09525at 1901.755 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.790 kb on + strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.791 kb on - strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.898 kb on + strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.899 kb on - strand, within A4249_RS09525at 1901.996 kb on + strand, within A4249_RS09525at 1901.997 kb on - strand, within A4249_RS09525at 1901.997 kb on - strand, within A4249_RS09525at 1902.355 kb on + strandat 1902.355 kb on + strandat 1902.355 kb on + strandat 1902.355 kb on + strandat 1902.356 kb on - strandat 1902.356 kb on - strandat 1902.356 kb on - strandat 1902.356 kb on - strandat 1902.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,899,432 - -0.1
1,899,571 + A4249_RS09510 0.15 +0.2
1,899,571 + A4249_RS09510 0.15 -0.7
1,899,572 - A4249_RS09510 0.15 +0.5
1,899,572 - A4249_RS09510 0.15 -0.5
1,899,582 + A4249_RS09510 0.16 +0.6
1,899,804 + A4249_RS09510 0.55 -0.1
1,899,804 + A4249_RS09510 0.55 -0.9
1,899,805 - A4249_RS09510 0.55 +0.5
1,899,805 - A4249_RS09510 0.55 -0.2
1,899,805 - A4249_RS09510 0.55 -0.7
1,899,805 - A4249_RS09510 0.55 +0.0
1,899,862 + A4249_RS09510 0.65 -0.1
1,899,942 + A4249_RS09510 0.78 -0.3
1,899,960 - A4249_RS09510 0.81 +0.0
1,899,966 + A4249_RS09510 0.82 -0.9
1,899,966 + A4249_RS09510 0.82 -0.6
1,899,966 + A4249_RS09510 0.82 +0.0
1,899,966 + A4249_RS09510 0.82 -0.2
1,899,967 - A4249_RS09510 0.83 -0.1
1,899,967 - A4249_RS09510 0.83 +0.7
1,899,967 - A4249_RS09510 0.83 -0.1
1,900,224 - A4249_RS09515 0.53 +0.3
1,900,305 - A4249_RS09515 0.82 -0.1
1,900,305 - A4249_RS09515 0.82 +0.6
1,900,305 - A4249_RS09515 0.82 -0.1
1,900,337 + +0.3
1,900,337 + +0.0
1,900,337 + +0.7
1,900,337 + -0.1
1,900,338 - -0.1
1,900,338 - +0.4
1,900,353 + +0.2
1,900,354 - -0.3
1,900,391 + +1.2
1,900,417 + +0.4
1,900,417 + -0.1
1,900,417 + +0.2
1,900,417 + +0.8
1,900,418 - +0.3
1,900,418 - +0.4
1,900,514 + +0.1
1,900,517 + -0.8
1,900,518 - +0.3
1,900,518 - -0.2
1,900,543 + A4249_RS09520 0.12 +0.9
1,900,544 - A4249_RS09520 0.12 -0.6
1,900,544 - A4249_RS09520 0.12 -0.9
1,900,544 - A4249_RS09520 0.12 -0.1
1,900,544 - A4249_RS09520 0.12 +0.1
1,900,544 - A4249_RS09520 0.12 -1.3
1,900,621 + A4249_RS09520 0.20 -0.4
1,900,621 + A4249_RS09520 0.20 +0.2
1,900,762 + A4249_RS09520 0.33 +0.4
1,900,762 + A4249_RS09520 0.33 -1.5
1,900,762 + A4249_RS09520 0.33 -0.6
1,900,762 + A4249_RS09520 0.33 -1.5
1,900,763 - A4249_RS09520 0.33 +0.2
1,900,807 + A4249_RS09520 0.38 -0.7
1,900,807 + A4249_RS09520 0.38 -0.4
1,900,807 + A4249_RS09520 0.38 -0.4
1,900,807 + A4249_RS09520 0.38 -1.7
1,900,808 - A4249_RS09520 0.38 +0.8
1,900,808 - A4249_RS09520 0.38 +0.0
1,900,808 - A4249_RS09520 0.38 -0.5
1,900,808 - A4249_RS09520 0.38 -0.1
1,900,820 - A4249_RS09520 0.39 +1.0
1,900,820 - A4249_RS09520 0.39 -0.6
1,900,834 + A4249_RS09520 0.40 -0.7
1,900,834 + A4249_RS09520 0.40 +0.3
1,900,834 + A4249_RS09520 0.40 -0.1
1,900,835 - A4249_RS09520 0.40 +0.7
1,900,835 - A4249_RS09520 0.40 -1.0
1,900,850 - A4249_RS09520 0.42 -0.7
1,900,988 + A4249_RS09520 0.55 +0.0
1,900,988 + A4249_RS09520 0.55 +0.3
1,900,989 - A4249_RS09520 0.55 -2.7
1,900,989 - A4249_RS09520 0.55 +1.2
1,900,989 - A4249_RS09520 0.55 -2.1
1,900,989 - A4249_RS09520 0.55 -1.7
1,900,990 + A4249_RS09520 0.55 +0.0
1,900,990 + A4249_RS09520 0.55 -0.5
1,900,991 - A4249_RS09520 0.55 -0.6
1,900,991 - A4249_RS09520 0.55 +0.3
1,900,991 - A4249_RS09520 0.55 -1.1
1,900,991 - A4249_RS09520 0.55 -1.4
1,900,991 - A4249_RS09520 0.55 -0.4
1,900,991 - A4249_RS09520 0.55 -0.8
1,900,991 - A4249_RS09520 0.55 +0.6
1,901,257 + A4249_RS09520 0.81 +0.1
1,901,257 + A4249_RS09520 0.81 -0.5
1,901,257 + A4249_RS09520 0.81 -1.5
1,901,257 + A4249_RS09520 0.81 +0.1
1,901,257 + A4249_RS09520 0.81 +0.1
1,901,257 + A4249_RS09520 0.81 -1.1
1,901,257 + A4249_RS09520 0.81 -0.3
1,901,258 - A4249_RS09520 0.81 -0.2
1,901,258 - A4249_RS09520 0.81 +0.5
1,901,258 - A4249_RS09520 0.81 -0.1
1,901,258 - A4249_RS09520 0.81 -0.8
1,901,258 - A4249_RS09520 0.81 -0.3
1,901,258 - A4249_RS09520 0.81 +0.1
1,901,258 - A4249_RS09520 0.81 -0.9
1,901,258 - A4249_RS09520 0.81 -0.8
1,901,442 - +1.5
1,901,443 + -0.1
1,901,443 + -1.5
1,901,443 + -0.4
1,901,443 + +0.0
1,901,443 + -0.3
1,901,444 - +0.5
1,901,444 - -2.2
1,901,444 - +0.5
1,901,444 - +0.1
1,901,444 - -0.9
1,901,444 - +0.9
1,901,444 - -0.3
1,901,444 - -0.2
1,901,444 - -0.8
1,901,444 - +0.5
1,901,482 - -0.1
1,901,482 - -0.0
1,901,540 + +0.8
1,901,540 + -0.3
1,901,581 + -0.3
1,901,581 + +0.1
1,901,581 + +0.7
1,901,582 - +0.3
1,901,606 + +0.4
1,901,607 - -0.0
1,901,607 - +0.1
1,901,607 - +0.3
1,901,607 - +0.6
1,901,607 - +0.0
1,901,607 - -0.0
1,901,607 - +0.4
1,901,734 + A4249_RS09525 0.20 +0.6
1,901,735 - A4249_RS09525 0.20 -0.3
1,901,735 - A4249_RS09525 0.20 -0.1
1,901,735 - A4249_RS09525 0.20 -0.1
1,901,755 + A4249_RS09525 0.23 -0.4
1,901,755 + A4249_RS09525 0.23 +0.0
1,901,790 + A4249_RS09525 0.28 -0.2
1,901,790 + A4249_RS09525 0.28 -0.8
1,901,790 + A4249_RS09525 0.28 +0.0
1,901,790 + A4249_RS09525 0.28 +0.2
1,901,790 + A4249_RS09525 0.28 -0.5
1,901,790 + A4249_RS09525 0.28 +0.4
1,901,790 + A4249_RS09525 0.28 -0.8
1,901,791 - A4249_RS09525 0.28 -0.0
1,901,791 - A4249_RS09525 0.28 +1.0
1,901,791 - A4249_RS09525 0.28 +0.9
1,901,791 - A4249_RS09525 0.28 -0.1
1,901,791 - A4249_RS09525 0.28 +0.2
1,901,791 - A4249_RS09525 0.28 -0.2
1,901,791 - A4249_RS09525 0.28 -0.7
1,901,791 - A4249_RS09525 0.28 +0.0
1,901,791 - A4249_RS09525 0.28 -0.1
1,901,898 + A4249_RS09525 0.44 -1.6
1,901,898 + A4249_RS09525 0.44 +0.3
1,901,898 + A4249_RS09525 0.44 +0.0
1,901,898 + A4249_RS09525 0.44 -0.3
1,901,898 + A4249_RS09525 0.44 +1.1
1,901,898 + A4249_RS09525 0.44 -0.2
1,901,898 + A4249_RS09525 0.44 +0.1
1,901,898 + A4249_RS09525 0.44 -0.1
1,901,898 + A4249_RS09525 0.44 +0.0
1,901,898 + A4249_RS09525 0.44 +0.9
1,901,898 + A4249_RS09525 0.44 -0.4
1,901,898 + A4249_RS09525 0.44 +1.6
1,901,899 - A4249_RS09525 0.44 +0.8
1,901,899 - A4249_RS09525 0.44 +0.3
1,901,899 - A4249_RS09525 0.44 -0.2
1,901,899 - A4249_RS09525 0.44 -0.3
1,901,899 - A4249_RS09525 0.44 -0.3
1,901,899 - A4249_RS09525 0.44 +0.0
1,901,899 - A4249_RS09525 0.44 -0.1
1,901,899 - A4249_RS09525 0.44 +0.1
1,901,996 + A4249_RS09525 0.58 +0.4
1,901,997 - A4249_RS09525 0.58 +0.2
1,901,997 - A4249_RS09525 0.58 -0.2
1,902,355 + -0.7
1,902,355 + -0.5
1,902,355 + -0.2
1,902,355 + -0.5
1,902,356 - +0.3
1,902,356 - -0.5
1,902,356 - -0.1
1,902,356 - +0.4
1,902,356 - +0.7

Or see this region's nucleotide sequence