Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09045

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09035 and A4249_RS09040 overlap by 8 nucleotidesA4249_RS09040 and A4249_RS09045 are separated by 68 nucleotidesA4249_RS09045 and A4249_RS09050 are separated by 72 nucleotides A4249_RS09035: A4249_RS09035 - redox-regulated ATPase YchF, at 1,811,203 to 1,812,297 _RS09035 A4249_RS09040: A4249_RS09040 - hypothetical protein, at 1,812,290 to 1,812,820 _RS09040 A4249_RS09045: A4249_RS09045 - hypothetical protein, at 1,812,889 to 1,814,322 _RS09045 A4249_RS09050: A4249_RS09050 - WYL domain-containing protein, at 1,814,395 to 1,815,384 _RS09050 Position (kb) 1812 1813 1814 1815Strain fitness (log2 ratio) -2 -1 0 1 2at 1812.028 kb on + strand, within A4249_RS09035at 1812.028 kb on + strand, within A4249_RS09035at 1812.053 kb on - strand, within A4249_RS09035at 1812.295 kb on + strandat 1812.295 kb on + strandat 1812.295 kb on + strandat 1812.295 kb on + strandat 1812.295 kb on + strandat 1812.296 kb on - strandat 1812.296 kb on - strandat 1812.423 kb on + strand, within A4249_RS09040at 1812.423 kb on + strand, within A4249_RS09040at 1812.423 kb on + strand, within A4249_RS09040at 1812.423 kb on + strand, within A4249_RS09040at 1812.423 kb on + strand, within A4249_RS09040at 1812.423 kb on + strand, within A4249_RS09040at 1812.423 kb on + strand, within A4249_RS09040at 1812.423 kb on + strand, within A4249_RS09040at 1812.424 kb on - strand, within A4249_RS09040at 1812.424 kb on - strand, within A4249_RS09040at 1812.424 kb on - strand, within A4249_RS09040at 1812.424 kb on - strand, within A4249_RS09040at 1812.424 kb on - strand, within A4249_RS09040at 1812.457 kb on + strand, within A4249_RS09040at 1812.457 kb on + strand, within A4249_RS09040at 1812.457 kb on + strand, within A4249_RS09040at 1812.457 kb on + strand, within A4249_RS09040at 1812.457 kb on + strand, within A4249_RS09040at 1812.457 kb on + strand, within A4249_RS09040at 1812.458 kb on - strand, within A4249_RS09040at 1812.458 kb on - strand, within A4249_RS09040at 1812.458 kb on - strand, within A4249_RS09040at 1812.458 kb on - strand, within A4249_RS09040at 1812.458 kb on - strand, within A4249_RS09040at 1812.458 kb on - strand, within A4249_RS09040at 1812.458 kb on - strand, within A4249_RS09040at 1812.547 kb on + strand, within A4249_RS09040at 1812.555 kb on + strand, within A4249_RS09040at 1812.555 kb on + strand, within A4249_RS09040at 1812.555 kb on + strand, within A4249_RS09040at 1812.555 kb on + strand, within A4249_RS09040at 1812.911 kb on + strandat 1812.911 kb on + strandat 1812.912 kb on - strandat 1812.912 kb on - strandat 1812.912 kb on - strandat 1812.912 kb on - strandat 1812.912 kb on - strandat 1812.912 kb on - strandat 1813.178 kb on + strand, within A4249_RS09045at 1813.178 kb on + strand, within A4249_RS09045at 1813.178 kb on + strand, within A4249_RS09045at 1813.179 kb on - strand, within A4249_RS09045at 1813.179 kb on - strand, within A4249_RS09045at 1813.179 kb on - strand, within A4249_RS09045at 1813.179 kb on - strand, within A4249_RS09045at 1813.179 kb on - strand, within A4249_RS09045at 1813.179 kb on - strand, within A4249_RS09045at 1813.181 kb on + strand, within A4249_RS09045at 1813.181 kb on + strand, within A4249_RS09045at 1813.181 kb on + strand, within A4249_RS09045at 1813.182 kb on - strand, within A4249_RS09045at 1813.280 kb on + strand, within A4249_RS09045at 1813.280 kb on + strand, within A4249_RS09045at 1813.280 kb on + strand, within A4249_RS09045at 1813.280 kb on + strand, within A4249_RS09045at 1813.280 kb on + strand, within A4249_RS09045at 1813.280 kb on + strand, within A4249_RS09045at 1813.280 kb on + strand, within A4249_RS09045at 1813.281 kb on - strand, within A4249_RS09045at 1813.281 kb on - strand, within A4249_RS09045at 1813.281 kb on - strand, within A4249_RS09045at 1813.281 kb on - strand, within A4249_RS09045at 1813.281 kb on - strand, within A4249_RS09045at 1813.281 kb on - strand, within A4249_RS09045at 1813.281 kb on - strand, within A4249_RS09045at 1813.365 kb on - strand, within A4249_RS09045at 1813.365 kb on - strand, within A4249_RS09045at 1813.365 kb on - strand, within A4249_RS09045at 1813.365 kb on - strand, within A4249_RS09045at 1813.365 kb on - strand, within A4249_RS09045at 1813.370 kb on - strand, within A4249_RS09045at 1813.370 kb on - strand, within A4249_RS09045at 1813.560 kb on + strand, within A4249_RS09045at 1813.561 kb on - strand, within A4249_RS09045at 1813.598 kb on + strand, within A4249_RS09045at 1813.599 kb on - strand, within A4249_RS09045at 1813.599 kb on - strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.602 kb on - strand, within A4249_RS09045at 1813.602 kb on - strand, within A4249_RS09045at 1813.602 kb on - strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.943 kb on + strand, within A4249_RS09045at 1813.944 kb on - strand, within A4249_RS09045at 1814.033 kb on + strand, within A4249_RS09045at 1814.033 kb on + strand, within A4249_RS09045at 1814.033 kb on + strand, within A4249_RS09045at 1814.034 kb on - strand, within A4249_RS09045at 1814.034 kb on - strand, within A4249_RS09045at 1814.165 kb on + strand, within A4249_RS09045at 1814.166 kb on - strand, within A4249_RS09045at 1814.166 kb on - strand, within A4249_RS09045at 1814.275 kb on + strandat 1814.358 kb on - strandat 1814.386 kb on - strandat 1814.386 kb on - strandat 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.882 kb on + strand, within A4249_RS09050at 1814.882 kb on + strand, within A4249_RS09050at 1814.882 kb on + strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,812,028 + A4249_RS09035 0.75 -0.1
1,812,028 + A4249_RS09035 0.75 +0.1
1,812,053 - A4249_RS09035 0.78 -0.5
1,812,295 + -0.8
1,812,295 + -0.0
1,812,295 + -0.9
1,812,295 + +0.2
1,812,295 + -0.2
1,812,296 - -0.0
1,812,296 - -0.6
1,812,423 + A4249_RS09040 0.25 -0.6
1,812,423 + A4249_RS09040 0.25 +0.3
1,812,423 + A4249_RS09040 0.25 -0.2
1,812,423 + A4249_RS09040 0.25 -0.3
1,812,423 + A4249_RS09040 0.25 -0.0
1,812,423 + A4249_RS09040 0.25 -0.4
1,812,423 + A4249_RS09040 0.25 -0.7
1,812,423 + A4249_RS09040 0.25 -0.8
1,812,424 - A4249_RS09040 0.25 +0.3
1,812,424 - A4249_RS09040 0.25 +0.2
1,812,424 - A4249_RS09040 0.25 +0.3
1,812,424 - A4249_RS09040 0.25 +0.2
1,812,424 - A4249_RS09040 0.25 -0.3
1,812,457 + A4249_RS09040 0.31 -0.3
1,812,457 + A4249_RS09040 0.31 -0.6
1,812,457 + A4249_RS09040 0.31 -0.1
1,812,457 + A4249_RS09040 0.31 -0.7
1,812,457 + A4249_RS09040 0.31 -0.0
1,812,457 + A4249_RS09040 0.31 +0.1
1,812,458 - A4249_RS09040 0.32 -2.1
1,812,458 - A4249_RS09040 0.32 -0.3
1,812,458 - A4249_RS09040 0.32 +0.2
1,812,458 - A4249_RS09040 0.32 -1.8
1,812,458 - A4249_RS09040 0.32 +0.3
1,812,458 - A4249_RS09040 0.32 +0.9
1,812,458 - A4249_RS09040 0.32 -0.2
1,812,547 + A4249_RS09040 0.48 -0.3
1,812,555 + A4249_RS09040 0.50 -0.9
1,812,555 + A4249_RS09040 0.50 +0.3
1,812,555 + A4249_RS09040 0.50 +0.2
1,812,555 + A4249_RS09040 0.50 +0.2
1,812,911 + +0.2
1,812,911 + +0.6
1,812,912 - -0.3
1,812,912 - -0.2
1,812,912 - +0.5
1,812,912 - +0.2
1,812,912 - -0.3
1,812,912 - -1.4
1,813,178 + A4249_RS09045 0.20 +0.8
1,813,178 + A4249_RS09045 0.20 -0.4
1,813,178 + A4249_RS09045 0.20 -0.3
1,813,179 - A4249_RS09045 0.20 +0.3
1,813,179 - A4249_RS09045 0.20 -0.2
1,813,179 - A4249_RS09045 0.20 +0.2
1,813,179 - A4249_RS09045 0.20 -0.2
1,813,179 - A4249_RS09045 0.20 +0.2
1,813,179 - A4249_RS09045 0.20 +1.6
1,813,181 + A4249_RS09045 0.20 +0.5
1,813,181 + A4249_RS09045 0.20 +0.2
1,813,181 + A4249_RS09045 0.20 -0.4
1,813,182 - A4249_RS09045 0.20 -1.0
1,813,280 + A4249_RS09045 0.27 -0.4
1,813,280 + A4249_RS09045 0.27 -0.2
1,813,280 + A4249_RS09045 0.27 -0.5
1,813,280 + A4249_RS09045 0.27 -0.7
1,813,280 + A4249_RS09045 0.27 -0.2
1,813,280 + A4249_RS09045 0.27 +1.8
1,813,280 + A4249_RS09045 0.27 +0.2
1,813,281 - A4249_RS09045 0.27 +0.2
1,813,281 - A4249_RS09045 0.27 -0.4
1,813,281 - A4249_RS09045 0.27 -0.3
1,813,281 - A4249_RS09045 0.27 -0.7
1,813,281 - A4249_RS09045 0.27 +0.3
1,813,281 - A4249_RS09045 0.27 +0.3
1,813,281 - A4249_RS09045 0.27 +0.1
1,813,365 - A4249_RS09045 0.33 -0.9
1,813,365 - A4249_RS09045 0.33 -0.0
1,813,365 - A4249_RS09045 0.33 +0.1
1,813,365 - A4249_RS09045 0.33 -0.1
1,813,365 - A4249_RS09045 0.33 -0.4
1,813,370 - A4249_RS09045 0.34 -0.9
1,813,370 - A4249_RS09045 0.34 -1.4
1,813,560 + A4249_RS09045 0.47 -0.5
1,813,561 - A4249_RS09045 0.47 +0.1
1,813,598 + A4249_RS09045 0.49 -1.1
1,813,599 - A4249_RS09045 0.50 -0.4
1,813,599 - A4249_RS09045 0.50 +0.5
1,813,601 + A4249_RS09045 0.50 -0.0
1,813,601 + A4249_RS09045 0.50 +0.5
1,813,601 + A4249_RS09045 0.50 -1.7
1,813,601 + A4249_RS09045 0.50 -0.8
1,813,601 + A4249_RS09045 0.50 +0.5
1,813,601 + A4249_RS09045 0.50 +0.2
1,813,601 + A4249_RS09045 0.50 +0.1
1,813,601 + A4249_RS09045 0.50 +0.7
1,813,601 + A4249_RS09045 0.50 -0.6
1,813,601 + A4249_RS09045 0.50 -0.5
1,813,602 - A4249_RS09045 0.50 +0.0
1,813,602 - A4249_RS09045 0.50 +0.3
1,813,602 - A4249_RS09045 0.50 +0.4
1,813,721 + A4249_RS09045 0.58 -0.2
1,813,721 + A4249_RS09045 0.58 -0.5
1,813,721 + A4249_RS09045 0.58 +0.0
1,813,721 + A4249_RS09045 0.58 +0.6
1,813,721 + A4249_RS09045 0.58 -0.5
1,813,721 + A4249_RS09045 0.58 -0.1
1,813,721 + A4249_RS09045 0.58 +1.0
1,813,721 + A4249_RS09045 0.58 -0.4
1,813,721 + A4249_RS09045 0.58 +0.1
1,813,721 + A4249_RS09045 0.58 +0.6
1,813,721 + A4249_RS09045 0.58 -0.4
1,813,721 + A4249_RS09045 0.58 +0.9
1,813,721 + A4249_RS09045 0.58 +0.7
1,813,722 - A4249_RS09045 0.58 +0.3
1,813,722 - A4249_RS09045 0.58 -0.7
1,813,722 - A4249_RS09045 0.58 -0.2
1,813,722 - A4249_RS09045 0.58 +0.1
1,813,722 - A4249_RS09045 0.58 -1.0
1,813,722 - A4249_RS09045 0.58 +0.0
1,813,722 - A4249_RS09045 0.58 -0.3
1,813,722 - A4249_RS09045 0.58 -0.6
1,813,722 - A4249_RS09045 0.58 -0.5
1,813,722 - A4249_RS09045 0.58 -0.0
1,813,722 - A4249_RS09045 0.58 -0.6
1,813,722 - A4249_RS09045 0.58 +0.1
1,813,722 - A4249_RS09045 0.58 +0.8
1,813,722 - A4249_RS09045 0.58 +1.0
1,813,722 - A4249_RS09045 0.58 +1.8
1,813,722 - A4249_RS09045 0.58 -1.9
1,813,943 + A4249_RS09045 0.74 -1.0
1,813,944 - A4249_RS09045 0.74 -0.1
1,814,033 + A4249_RS09045 0.80 +0.2
1,814,033 + A4249_RS09045 0.80 +0.6
1,814,033 + A4249_RS09045 0.80 +0.5
1,814,034 - A4249_RS09045 0.80 -0.9
1,814,034 - A4249_RS09045 0.80 +0.2
1,814,165 + A4249_RS09045 0.89 -0.1
1,814,166 - A4249_RS09045 0.89 -0.5
1,814,166 - A4249_RS09045 0.89 +0.3
1,814,275 + -0.9
1,814,358 - +0.3
1,814,386 - -0.0
1,814,386 - -0.6
1,814,666 + A4249_RS09050 0.27 +0.3
1,814,666 + A4249_RS09050 0.27 +0.0
1,814,666 + A4249_RS09050 0.27 -0.5
1,814,666 + A4249_RS09050 0.27 +0.2
1,814,666 + A4249_RS09050 0.27 +0.3
1,814,666 + A4249_RS09050 0.27 +1.0
1,814,666 + A4249_RS09050 0.27 +0.6
1,814,666 + A4249_RS09050 0.27 +0.1
1,814,666 + A4249_RS09050 0.27 -1.1
1,814,667 - A4249_RS09050 0.27 +0.4
1,814,667 - A4249_RS09050 0.27 -0.0
1,814,667 - A4249_RS09050 0.27 -0.0
1,814,667 - A4249_RS09050 0.27 +0.4
1,814,667 - A4249_RS09050 0.27 +0.9
1,814,667 - A4249_RS09050 0.27 +0.5
1,814,667 - A4249_RS09050 0.27 +0.2
1,814,667 - A4249_RS09050 0.27 -0.3
1,814,667 - A4249_RS09050 0.27 -0.2
1,814,667 - A4249_RS09050 0.27 +0.1
1,814,667 - A4249_RS09050 0.27 -1.0
1,814,667 - A4249_RS09050 0.27 -0.4
1,814,667 - A4249_RS09050 0.27 +0.7
1,814,810 + A4249_RS09050 0.42 +0.6
1,814,810 + A4249_RS09050 0.42 -0.7
1,814,810 + A4249_RS09050 0.42 -0.1
1,814,810 + A4249_RS09050 0.42 +0.3
1,814,810 + A4249_RS09050 0.42 -0.8
1,814,810 + A4249_RS09050 0.42 +0.2
1,814,810 + A4249_RS09050 0.42 +0.4
1,814,810 + A4249_RS09050 0.42 -0.2
1,814,810 + A4249_RS09050 0.42 +0.2
1,814,810 + A4249_RS09050 0.42 +0.4
1,814,810 + A4249_RS09050 0.42 -0.1
1,814,810 + A4249_RS09050 0.42 +0.6
1,814,810 + A4249_RS09050 0.42 +0.3
1,814,810 + A4249_RS09050 0.42 +0.2
1,814,811 - A4249_RS09050 0.42 -0.2
1,814,811 - A4249_RS09050 0.42 -0.3
1,814,811 - A4249_RS09050 0.42 -0.6
1,814,811 - A4249_RS09050 0.42 -0.2
1,814,811 - A4249_RS09050 0.42 -0.1
1,814,811 - A4249_RS09050 0.42 +0.1
1,814,811 - A4249_RS09050 0.42 +0.2
1,814,882 + A4249_RS09050 0.49 -1.0
1,814,882 + A4249_RS09050 0.49 -1.1
1,814,882 + A4249_RS09050 0.49 -0.3
1,814,883 - A4249_RS09050 0.49 -1.1
1,814,883 - A4249_RS09050 0.49 -1.9
1,814,883 - A4249_RS09050 0.49 -0.0
1,814,883 - A4249_RS09050 0.49 +0.5
1,814,883 - A4249_RS09050 0.49 +0.4

Or see this region's nucleotide sequence