Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07250

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07245 and A4249_RS07250 are separated by 120 nucleotidesA4249_RS07250 and A4249_RS07255 are separated by 122 nucleotidesA4249_RS07255 and A4249_RS07260 are separated by 72 nucleotides A4249_RS07245: A4249_RS07245 - M28 family peptidase, at 1,450,115 to 1,451,071 _RS07245 A4249_RS07250: A4249_RS07250 - NAD-dependent DNA ligase LigA, at 1,451,192 to 1,453,525 _RS07250 A4249_RS07255: A4249_RS07255 - DUF2147 domain-containing protein, at 1,453,648 to 1,454,070 _RS07255 A4249_RS07260: A4249_RS07260 - aldo/keto reductase, at 1,454,143 to 1,455,129 _RS07260 Position (kb) 1451 1452 1453 1454Strain fitness (log2 ratio) -2 -1 0 1at 1450.225 kb on - strand, within A4249_RS07245at 1450.225 kb on - strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.640 kb on - strand, within A4249_RS07245at 1450.689 kb on + strand, within A4249_RS07245at 1450.690 kb on - strand, within A4249_RS07245at 1450.708 kb on + strand, within A4249_RS07245at 1450.708 kb on + strand, within A4249_RS07245at 1450.708 kb on + strand, within A4249_RS07245at 1450.708 kb on + strand, within A4249_RS07245at 1450.709 kb on - strand, within A4249_RS07245at 1450.709 kb on - strand, within A4249_RS07245at 1450.710 kb on + strand, within A4249_RS07245at 1450.710 kb on + strand, within A4249_RS07245at 1450.710 kb on + strand, within A4249_RS07245at 1450.710 kb on + strand, within A4249_RS07245at 1450.711 kb on - strand, within A4249_RS07245at 1450.711 kb on - strand, within A4249_RS07245at 1450.711 kb on - strand, within A4249_RS07245at 1450.711 kb on - strand, within A4249_RS07245at 1450.711 kb on - strand, within A4249_RS07245at 1450.711 kb on - strand, within A4249_RS07245at 1450.750 kb on + strand, within A4249_RS07245at 1450.751 kb on - strand, within A4249_RS07245at 1450.751 kb on - strand, within A4249_RS07245at 1450.866 kb on + strand, within A4249_RS07245at 1450.866 kb on + strand, within A4249_RS07245at 1450.866 kb on + strand, within A4249_RS07245at 1450.867 kb on - strand, within A4249_RS07245at 1450.867 kb on - strand, within A4249_RS07245at 1450.867 kb on - strand, within A4249_RS07245at 1450.867 kb on - strand, within A4249_RS07245at 1450.867 kb on - strand, within A4249_RS07245at 1450.900 kb on + strand, within A4249_RS07245at 1450.900 kb on + strand, within A4249_RS07245at 1450.901 kb on - strand, within A4249_RS07245at 1450.901 kb on - strand, within A4249_RS07245at 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.071 kb on + strandat 1451.072 kb on - strandat 1451.072 kb on - strandat 1451.072 kb on - strandat 1451.072 kb on - strandat 1451.072 kb on - strandat 1451.072 kb on - strandat 1451.100 kb on - strandat 1451.126 kb on + strandat 1451.126 kb on + strandat 1451.126 kb on + strandat 1451.126 kb on + strandat 1451.126 kb on + strandat 1451.127 kb on - strandat 1451.127 kb on - strandat 1451.127 kb on - strandat 1451.127 kb on - strandat 1451.179 kb on + strandat 1451.179 kb on + strandat 1451.179 kb on + strandat 1451.179 kb on + strandat 1451.179 kb on + strandat 1451.179 kb on + strandat 1451.179 kb on + strandat 1451.179 kb on + strandat 1451.180 kb on - strandat 1451.180 kb on - strandat 1453.534 kb on + strandat 1453.534 kb on + strandat 1453.534 kb on + strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.647 kb on + strandat 1453.647 kb on + strandat 1453.648 kb on - strandat 1453.648 kb on - strandat 1453.648 kb on - strandat 1453.746 kb on + strand, within A4249_RS07255at 1453.746 kb on + strand, within A4249_RS07255at 1453.747 kb on - strand, within A4249_RS07255at 1453.747 kb on - strand, within A4249_RS07255at 1453.794 kb on + strand, within A4249_RS07255at 1453.932 kb on + strand, within A4249_RS07255at 1453.932 kb on + strand, within A4249_RS07255at 1453.933 kb on - strand, within A4249_RS07255at 1453.933 kb on - strand, within A4249_RS07255at 1453.941 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.969 kb on + strand, within A4249_RS07255at 1453.969 kb on + strand, within A4249_RS07255at 1454.012 kb on + strand, within A4249_RS07255at 1454.036 kb on + strandat 1454.037 kb on - strandat 1454.068 kb on + strandat 1454.088 kb on + strandat 1454.088 kb on + strandat 1454.088 kb on + strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.140 kb on - strandat 1454.177 kb on + strandat 1454.178 kb on - strandat 1454.363 kb on - strand, within A4249_RS07260at 1454.363 kb on - strand, within A4249_RS07260at 1454.371 kb on - strand, within A4249_RS07260

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,450,225 - A4249_RS07245 0.11 -0.2
1,450,225 - A4249_RS07245 0.11 -0.2
1,450,236 + A4249_RS07245 0.13 +0.3
1,450,236 + A4249_RS07245 0.13 -0.4
1,450,236 + A4249_RS07245 0.13 +0.8
1,450,236 + A4249_RS07245 0.13 -0.3
1,450,237 - A4249_RS07245 0.13 -0.2
1,450,237 - A4249_RS07245 0.13 +0.5
1,450,237 - A4249_RS07245 0.13 -0.6
1,450,237 - A4249_RS07245 0.13 -0.2
1,450,237 - A4249_RS07245 0.13 +0.6
1,450,251 + A4249_RS07245 0.14 -0.0
1,450,251 + A4249_RS07245 0.14 +0.7
1,450,251 + A4249_RS07245 0.14 +0.4
1,450,251 + A4249_RS07245 0.14 +0.5
1,450,251 + A4249_RS07245 0.14 +0.3
1,450,251 + A4249_RS07245 0.14 -0.3
1,450,252 - A4249_RS07245 0.14 +0.2
1,450,252 - A4249_RS07245 0.14 -0.3
1,450,252 - A4249_RS07245 0.14 +0.4
1,450,252 - A4249_RS07245 0.14 -0.3
1,450,252 - A4249_RS07245 0.14 -0.4
1,450,252 - A4249_RS07245 0.14 +0.0
1,450,252 - A4249_RS07245 0.14 -0.6
1,450,410 + A4249_RS07245 0.31 -0.1
1,450,410 + A4249_RS07245 0.31 -0.6
1,450,410 + A4249_RS07245 0.31 -0.3
1,450,410 + A4249_RS07245 0.31 +0.5
1,450,410 + A4249_RS07245 0.31 +0.8
1,450,410 + A4249_RS07245 0.31 +0.8
1,450,410 + A4249_RS07245 0.31 +0.2
1,450,411 - A4249_RS07245 0.31 +0.2
1,450,411 - A4249_RS07245 0.31 +0.5
1,450,411 - A4249_RS07245 0.31 -0.1
1,450,411 - A4249_RS07245 0.31 +0.2
1,450,411 - A4249_RS07245 0.31 +0.5
1,450,411 - A4249_RS07245 0.31 +0.0
1,450,411 - A4249_RS07245 0.31 -0.0
1,450,411 - A4249_RS07245 0.31 +0.0
1,450,411 - A4249_RS07245 0.31 +0.0
1,450,411 - A4249_RS07245 0.31 +1.0
1,450,427 + A4249_RS07245 0.33 -0.1
1,450,427 + A4249_RS07245 0.33 -0.3
1,450,427 + A4249_RS07245 0.33 +0.6
1,450,427 + A4249_RS07245 0.33 +1.1
1,450,427 + A4249_RS07245 0.33 -0.9
1,450,428 - A4249_RS07245 0.33 -0.4
1,450,428 - A4249_RS07245 0.33 -0.2
1,450,428 - A4249_RS07245 0.33 -0.1
1,450,428 - A4249_RS07245 0.33 -0.3
1,450,428 - A4249_RS07245 0.33 -0.1
1,450,428 - A4249_RS07245 0.33 -0.1
1,450,428 - A4249_RS07245 0.33 -0.1
1,450,428 - A4249_RS07245 0.33 +0.0
1,450,428 - A4249_RS07245 0.33 +1.0
1,450,428 - A4249_RS07245 0.33 -0.4
1,450,640 - A4249_RS07245 0.55 -2.0
1,450,689 + A4249_RS07245 0.60 +0.1
1,450,690 - A4249_RS07245 0.60 +0.2
1,450,708 + A4249_RS07245 0.62 -1.4
1,450,708 + A4249_RS07245 0.62 +0.4
1,450,708 + A4249_RS07245 0.62 -0.0
1,450,708 + A4249_RS07245 0.62 -0.0
1,450,709 - A4249_RS07245 0.62 -0.2
1,450,709 - A4249_RS07245 0.62 -1.0
1,450,710 + A4249_RS07245 0.62 -0.1
1,450,710 + A4249_RS07245 0.62 -0.5
1,450,710 + A4249_RS07245 0.62 -0.1
1,450,710 + A4249_RS07245 0.62 +0.6
1,450,711 - A4249_RS07245 0.62 +0.6
1,450,711 - A4249_RS07245 0.62 -0.2
1,450,711 - A4249_RS07245 0.62 -0.3
1,450,711 - A4249_RS07245 0.62 +0.3
1,450,711 - A4249_RS07245 0.62 -0.6
1,450,711 - A4249_RS07245 0.62 -0.0
1,450,750 + A4249_RS07245 0.66 -0.2
1,450,751 - A4249_RS07245 0.66 -0.4
1,450,751 - A4249_RS07245 0.66 +1.2
1,450,866 + A4249_RS07245 0.78 -0.8
1,450,866 + A4249_RS07245 0.78 -0.2
1,450,866 + A4249_RS07245 0.78 -1.3
1,450,867 - A4249_RS07245 0.79 -0.4
1,450,867 - A4249_RS07245 0.79 -0.1
1,450,867 - A4249_RS07245 0.79 -1.0
1,450,867 - A4249_RS07245 0.79 +1.1
1,450,867 - A4249_RS07245 0.79 +0.5
1,450,900 + A4249_RS07245 0.82 +0.8
1,450,900 + A4249_RS07245 0.82 -1.7
1,450,901 - A4249_RS07245 0.82 -0.8
1,450,901 - A4249_RS07245 0.82 +0.0
1,451,071 + +0.7
1,451,071 + -0.2
1,451,071 + +0.1
1,451,071 + -0.2
1,451,071 + -0.3
1,451,071 + -0.9
1,451,071 + -0.6
1,451,071 + -1.0
1,451,071 + +1.0
1,451,072 - +0.3
1,451,072 - -0.1
1,451,072 - -0.8
1,451,072 - +0.5
1,451,072 - +0.8
1,451,072 - +0.5
1,451,100 - -0.6
1,451,126 + +0.8
1,451,126 + +0.4
1,451,126 + +0.6
1,451,126 + -0.9
1,451,126 + +0.1
1,451,127 - +0.3
1,451,127 - -1.3
1,451,127 - -0.2
1,451,127 - +0.1
1,451,179 + -1.4
1,451,179 + -0.2
1,451,179 + +0.3
1,451,179 + -0.7
1,451,179 + +1.2
1,451,179 + -0.1
1,451,179 + -1.2
1,451,179 + -0.7
1,451,180 - -0.2
1,451,180 - +0.9
1,453,534 + +0.1
1,453,534 + +0.5
1,453,534 + -0.4
1,453,535 - -0.5
1,453,535 - -1.1
1,453,535 - -0.1
1,453,535 - +0.2
1,453,535 - +0.5
1,453,535 - -0.5
1,453,647 + +0.1
1,453,647 + -0.1
1,453,648 - +0.4
1,453,648 - -0.0
1,453,648 - +0.6
1,453,746 + A4249_RS07255 0.23 -0.8
1,453,746 + A4249_RS07255 0.23 +0.6
1,453,747 - A4249_RS07255 0.23 +0.4
1,453,747 - A4249_RS07255 0.23 -0.9
1,453,794 + A4249_RS07255 0.35 +1.2
1,453,932 + A4249_RS07255 0.67 +0.5
1,453,932 + A4249_RS07255 0.67 -0.0
1,453,933 - A4249_RS07255 0.67 -0.1
1,453,933 - A4249_RS07255 0.67 +1.5
1,453,941 + A4249_RS07255 0.69 +0.3
1,453,945 + A4249_RS07255 0.70 +0.7
1,453,945 + A4249_RS07255 0.70 +0.0
1,453,945 + A4249_RS07255 0.70 +0.3
1,453,946 - A4249_RS07255 0.70 -0.4
1,453,946 - A4249_RS07255 0.70 -0.2
1,453,946 - A4249_RS07255 0.70 +0.8
1,453,946 - A4249_RS07255 0.70 +0.8
1,453,946 - A4249_RS07255 0.70 +0.6
1,453,969 + A4249_RS07255 0.76 +0.7
1,453,969 + A4249_RS07255 0.76 +0.8
1,454,012 + A4249_RS07255 0.86 -0.3
1,454,036 + -1.2
1,454,037 - +0.4
1,454,068 + -0.1
1,454,088 + +0.2
1,454,088 + -0.1
1,454,088 + -0.4
1,454,089 - +0.7
1,454,089 - -0.9
1,454,089 - +0.2
1,454,089 - +0.1
1,454,089 - -0.8
1,454,089 - +0.8
1,454,089 - -0.3
1,454,089 - -0.2
1,454,089 - +0.9
1,454,089 - -0.6
1,454,139 + -0.3
1,454,139 + +0.6
1,454,139 + -0.7
1,454,139 + +0.0
1,454,140 - -0.5
1,454,177 + +0.1
1,454,178 - -0.2
1,454,363 - A4249_RS07260 0.22 -0.0
1,454,363 - A4249_RS07260 0.22 +0.3
1,454,371 - A4249_RS07260 0.23 -0.3

Or see this region's nucleotide sequence